X-44920703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044920703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044920703
    reference: chr 0
allele count: 1
allele frequency: 1.834021091242549e-5
allele num: 54525
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1290+39G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.352+39G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1425+39G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1446+39G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.217+39G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.416+39G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1290+39G>A
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

X-44920704-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044920704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044920704
    reference: chr 0
allele count: 1
allele frequency: 1.872939766257117e-5
allele num: 53392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1290+40A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.352+40A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.217+40A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1425+40A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.416+40A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1446+40A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1290+40A>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24344
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-44920711-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044920711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044920712
    reference: chr 0
allele count: 2
allele frequency: 4.335667367599558e-5
allele num: 46129
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.416+48dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1446+48dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1290+48dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.217+48dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1290+48dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1425+48dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.352+48dupT
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4230
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

X-44920712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044920712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044920712
    reference: chr 0
allele count: 1
allele frequency: 2.325094747610965e-5
allele num: 43009
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1290+48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.416+48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.217+48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1290+48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1425+48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.352+48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1446+48T>C
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 142
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS

X-44921843-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921843
    reference: chr 0
allele count: 1
allele frequency: 1.757623692767379e-5
allele num: 56895
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-824A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-49A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-49A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-824A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-49A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-49A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-49A>C
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-44921844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921844
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921844
    reference: chr 0
allele count: 1
allele frequency: 1.75337085546964e-5
allele num: 57033
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-823T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-48T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-823T>C
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
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genotype quality: GenotypeQuality
  all individuals: 6083
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-44921847-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921847
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921847
    reference: chr 0
allele count: 4
allele frequency: 7.020376643206907e-5
allele num: 56977
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-820C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-45C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-45C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-45C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-45C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-45C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-820C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-44921848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921848
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921848
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 57081
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-44C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-819C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-819C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-44C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-44C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-44C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-44C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

X-44921868-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921868
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921868
    reference: chr 0
allele count: 2
allele frequency: 3.206361421059382e-5
allele num: 62376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-799A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-799A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-24A>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

X-44921873-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921873
    reference: chr 0
allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-19C>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-794C>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-794C>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-19C>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-19C>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-19C>A
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-44921873-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921874
    reference: chr 0
allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-14dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-789dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-14dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-14dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-789dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-14dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-14dupT
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-44921878-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921878
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921878
    reference: chr 0
allele count: 4
allele frequency: 5.894401791898145e-5
allele num: 67861
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-789T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-14T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-14T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-14T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-14T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-789T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-14T>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

X-44921879-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921879
    reference: chr 0
allele count: 1
allele frequency: 1.463721658689384e-5
allele num: 68319
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-13G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-13G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-13G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-13G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-788G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-788G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-13G>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

X-44921879-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921876
    reference: chr 0
allele count: 1
allele frequency: 1.463721658689384e-5
allele num: 68319
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-780_1291-778delTCT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-5_1291-3delTCT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-5_353-3delTCT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-5_218-3delTCT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-5_1447-3delTCT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-5_1426-3delTCT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-780_417-778delTCT
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: GTTC
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-44921882-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921882
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921882
    reference: chr 0
allele count: 1
allele frequency: 1.423284941645317e-5
allele num: 70260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.353-10C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1426-10C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1291-10C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1447-10C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-785C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.218-10C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-785C>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

X-44921900-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921900
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921900
    reference: chr 0
allele count: 1
allele frequency: 1.290106175738263e-5
allele num: 77513
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1455A>G
  hgvsp: ENST00000382899.4:c.1455A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.226A>G
  hgvsp: ENST00000414389.1:c.226A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.361A>G
  hgvsp: ENST00000433797.1:c.361A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-767A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1434A>G
  hgvsp: ENST00000377967.4:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-767A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1299A>G
  hgvsp: ENST00000536777.1:c.1299A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9185
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu478Glu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-44921907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921907
    reference: chr 0
allele count: 3
allele frequency: 3.800114003420103e-5
allele num: 78945
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.233C>T
  hgvsp: ENSP00000405910.1:p.Arg79Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1462C>T
  hgvsp: ENSP00000372355.4:p.Arg488Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1441C>T
  hgvsp: ENSP00000367203.4:p.Arg481Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-760C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.368C>T
  hgvsp: ENSP00000398929.1:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1306C>T
  hgvsp: ENSP00000437405.1:p.Arg436Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-760C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36514
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg481Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

X-44921908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921908
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921908
    reference: chr 0
allele count: 2
allele frequency: 2.523245398231205e-5
allele num: 79263
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.369G>A
  hgvsp: ENSP00000398929.1:p.Arg124His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-759G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.234G>A
  hgvsp: ENSP00000405910.1:p.Arg79His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1307G>A
  hgvsp: ENSP00000437405.1:p.Arg436His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1442G>A
  hgvsp: ENSP00000367203.4:p.Arg481His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1463G>A
  hgvsp: ENSP00000372355.4:p.Arg488His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-759G>A
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36760
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg481His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-44921909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921909
    reference: chr 0
allele count: 2
allele frequency: 2.515153801654971e-5
allele num: 79518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-758C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1464C>T
  hgvsp: ENST00000382899.4:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1308C>T
  hgvsp: ENST00000536777.1:c.1308C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1443C>T
  hgvsp: ENST00000377967.4:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-758C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.235C>T
  hgvsp: ENST00000414389.1:c.235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.370C>T
  hgvsp: ENST00000433797.1:c.370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg481Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-44921920-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921920
    reference: chr 0
allele count: 1
allele frequency: 1.229891277611059e-5
allele num: 81308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1319A>G
  hgvsp: ENSP00000437405.1:p.Asn440Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.246A>G
  hgvsp: ENSP00000405910.1:p.Asn83Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-747A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-747A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.381A>G
  hgvsp: ENSP00000398929.1:p.Asn128Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1454A>G
  hgvsp: ENSP00000367203.4:p.Asn485Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1475A>G
  hgvsp: ENSP00000372355.4:p.Asn492Ser
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn485Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

X-44921949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921949
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921949
    reference: chr 0
allele count: 1
allele frequency: 1.21000919606989e-5
allele num: 82644
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1483C>T
  hgvsp: ENST00000377967.4:c.1483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.275C>T
  hgvsp: ENST00000414389.1:c.275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1504C>T
  hgvsp: ENST00000382899.4:c.1504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1348C>T
  hgvsp: ENST00000536777.1:c.1348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-718C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.410C>T
  hgvsp: ENST00000433797.1:c.410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-718C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu495Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

X-44921978-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921978
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.439A>T
  hgvsp: ENSP00000398929.1:p.Leu147Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-689A>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-689A>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1533A>T
  hgvsp: ENSP00000372355.4:p.Leu511Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.304A>T
  hgvsp: ENSP00000405910.1:p.Leu102Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1512A>T
  hgvsp: ENSP00000367203.4:p.Leu504Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1377A>T
  hgvsp: ENSP00000437405.1:p.Leu459Phe
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu504Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

X-44921981-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921981
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921981
    reference: chr 0
allele count: 4
allele frequency: 4.933094900413147e-5
allele num: 81085
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-686G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.307G>C
  hgvsp: ENSP00000405910.1:p.Met103Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.442G>C
  hgvsp: ENSP00000398929.1:p.Met148Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1536G>C
  hgvsp: ENSP00000372355.4:p.Met512Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1515G>C
  hgvsp: ENSP00000367203.4:p.Met505Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1380G>C
  hgvsp: ENSP00000437405.1:p.Met460Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-686G>C
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met505Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-44921984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921984
    reference: chr 0
allele count: 1
allele frequency: 1.238650861481674e-5
allele num: 80733
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.310A>G
  hgvsp: ENST00000414389.1:c.310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1539A>G
  hgvsp: ENST00000382899.4:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-683A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.445A>G
  hgvsp: ENST00000433797.1:c.445A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1383A>G
  hgvsp: ENST00000536777.1:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1518A>G
  hgvsp: ENST00000377967.4:c.1518A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-683A>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln506Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

X-44921987-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921987
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921987
    reference: chr 0
allele count: 1
allele frequency: 1.246245684874316e-5
allele num: 80241
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.448A>C
  hgvsp: ENSP00000398929.1:p.Gln150His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1521A>C
  hgvsp: ENSP00000367203.4:p.Gln507His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-680A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1386A>C
  hgvsp: ENSP00000437405.1:p.Gln462His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-680A>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1542A>C
  hgvsp: ENSP00000372355.4:p.Gln514His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.313A>C
  hgvsp: ENSP00000405910.1:p.Gln105His
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln507His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

X-44921996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044921996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044921996
    reference: chr 0
allele count: 219
allele frequency: 2.797363580625383e-3
allele num: 78288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+3G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+3G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+3G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-671G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-671G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+3G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+3G>A
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27607
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 32128
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.75e1
  variant carriers: 5
hgvs: c.1527+3G>A
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-44922002-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922002
    reference: chr 0
allele count: 2
allele frequency: 2.599157872849197e-5
allele num: 76948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-665A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+9A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-665A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+9A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+9A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+9A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+9A>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-44922013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922013
    reference: chr 0
allele count: 43
allele frequency: 5.785946876934255e-4
allele num: 74318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-654C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+20C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+20C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+20C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-654C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+20C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+20C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9868
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18346
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

X-44922024-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922024
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922024
    reference: chr 0
allele count: 1
allele frequency: 1.40453383522009e-5
allele num: 71198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-643G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-643G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+31G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+31G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+31G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+31G>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+31G>C
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4770
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-44922026-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922026
    reference: chr 0
allele count: 1
allele frequency: 1.415989351760075e-5
allele num: 70622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+33T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+33T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-641T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-641T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+33T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+33T>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+33T>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-44922028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922028
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922028
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 69950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-639G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+35G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+35G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+35G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-639G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+35G>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+35G>A
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11691
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-44922029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922029
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922029
    reference: chr 0
allele count: 1
allele frequency: 1.437835195329911e-5
allele num: 69549
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-638C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+36C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+36C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-638C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+36C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+36C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+36C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 5370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
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genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 17422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-44922034-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922034
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922034
    reference: chr 0
allele count: 1
allele frequency: 1.483569468140346e-5
allele num: 67405
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-633T>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1548+41T>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.319+41T>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-633T>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1527+41T>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1392+41T>A
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.454+41T>A
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13638
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
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genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5681
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
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genotype quality: GenotypeQuality
  all individuals: 4090
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9176
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-44922617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922617
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922617
    reference: chr 0
allele count: 1
allele frequency: 1.221971039286369e-5
allele num: 81835
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-50C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-50C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-50C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-50C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-50C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-50C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-50C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-44922619-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922619
    reference: chr 0
allele count: 1
allele frequency: 1.22206063864889e-5
allele num: 81829
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-48C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-48C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-48C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-48C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-48C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-48C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-48C>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

X-44922619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922619
    reference: chr 0
allele count: 4
allele frequency: 4.888242554595559e-5
allele num: 81829
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-48C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-48C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-48C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-48C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-48C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-48C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-48C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
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genotype quality: GenotypeQuality
  all individuals: 367
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genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

X-44922623-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922623
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922623
    reference: chr 0
allele count: 1
allele frequency: 1.220688224020703e-5
allele num: 81921
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-44A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-44A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-44A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-44A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-44A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-44A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-44A>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 73
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genotype depth: GenotypeDepth
  all individuals: 100
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-44922629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922629
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922629
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82017
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-38C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-38C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-38C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-38C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-38C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-38C>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-38C>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-44922634-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922634
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922634
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82140
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-33C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-33C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-33C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-33C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-33C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-33C>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-33C>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

X-44922643-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922643
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922643
    reference: chr 0
allele count: 5
allele frequency: 6.060973392326807e-5
allele num: 82495
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-24A>G
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-24A>G
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

X-44922654-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922654
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922655
    reference: chr 0
allele count: 1
allele frequency: 1.204746702005903e-5
allele num: 83005
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-6dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-6dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-6dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-6dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-6dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-6dupT
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-6dupT
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-44922657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922657
    reference: chr 0
allele count: 1
allele frequency: 1.20193752328754e-5
allele num: 83199
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-10T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-10T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-10T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-10T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-10T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-10T>C
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-10T>C
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7235
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

X-44922662-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922662
    reference: chr 0
allele count: 1
allele frequency: 1.197203333014079e-5
allele num: 83528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1291-5G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.455-5G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1528-5G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.417-5G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1549-5G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1393-5G>T
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.320-5G>T
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7245
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1528-5G>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-44922680-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922680
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922680
    reference: chr 0
allele count: 1
allele frequency: 1.170987610951076e-5
allele num: 85398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.468G>T
  hgvsp: ENSP00000398929.1:p.Gly157Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1541G>T
  hgvsp: ENSP00000367203.4:p.Gly514Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1562G>T
  hgvsp: ENSP00000372355.4:p.Gly521Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.430G>T
  hgvsp: ENSP00000399980.1:p.Gly144Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.333G>T
  hgvsp: ENSP00000405910.1:p.Gly112Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1304G>T
  hgvsp: ENSP00000443078.1:p.Gly435Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1406G>T
  hgvsp: ENSP00000437405.1:p.Gly469Val
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly514Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-44922681-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922681
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922681
    reference: chr 0
allele count: 3
allele frequency: 3.50905922122279e-5
allele num: 85493
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.334A>T
  hgvsp: ENST00000414389.1:c.334A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1305A>T
  hgvsp: ENST00000543216.1:c.1305A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1563A>T
  hgvsp: ENST00000382899.4:c.1563A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1407A>T
  hgvsp: ENST00000536777.1:c.1407A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1542A>T
  hgvsp: ENST00000377967.4:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.469A>T
  hgvsp: ENST00000433797.1:c.469A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.431A>T
  hgvsp: ENST00000451692.1:c.431A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly514Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-44922685-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922685
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922685
    reference: chr 0
allele count: 1
allele frequency: 1.167160764723733e-5
allele num: 85678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.473G>T
  hgvsp: ENSP00000398929.1:p.Ala159Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1411G>T
  hgvsp: ENSP00000437405.1:p.Ala471Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1546G>T
  hgvsp: ENSP00000367203.4:p.Ala516Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1309G>T
  hgvsp: ENSP00000443078.1:p.Ala437Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1567G>T
  hgvsp: ENSP00000372355.4:p.Ala523Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.338G>T
  hgvsp: ENSP00000405910.1:p.Ala114Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.435G>T
  hgvsp: ENSP00000399980.1:p.Ala146Ser
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41922
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala516Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-44922703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922703
    reference: chr 0
allele count: 1
allele frequency: 1.152618172178103e-5
allele num: 86759
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1327G>A
  hgvsp: ENSP00000443078.1:p.Gly443Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1585G>A
  hgvsp: ENSP00000372355.4:p.Gly529Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1564G>A
  hgvsp: ENSP00000367203.4:p.Gly522Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1429G>A
  hgvsp: ENSP00000437405.1:p.Gly477Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.491G>A
  hgvsp: ENSP00000398929.1:p.Gly165Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.356G>A
  hgvsp: ENSP00000405910.1:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.453G>A
  hgvsp: ENSP00000399980.1:p.Gly152Arg
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly522Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-44922741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922741
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922741
    reference: chr 0
allele count: 1
allele frequency: 1.14433496973234e-5
allele num: 87387
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1623T>C
  hgvsp: ENST00000382899.4:c.1623T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1467T>C
  hgvsp: ENST00000536777.1:c.1467T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.491T>C
  hgvsp: ENST00000451692.1:c.491T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1365T>C
  hgvsp: ENST00000543216.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.529T>C
  hgvsp: ENST00000433797.1:c.529T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.394T>C
  hgvsp: ENST00000414389.1:c.394T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1602T>C
  hgvsp: ENST00000377967.4:c.1602T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro534Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-44922748-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922748
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922748
    reference: chr 0
allele count: 1
allele frequency: 1.144230219120087e-5
allele num: 87395
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.498T>A
  hgvsp: ENSP00000399980.1:p.Ser167Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.401T>A
  hgvsp: ENSP00000405910.1:p.Ser135Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1630T>A
  hgvsp: ENSP00000372355.4:p.Ser544Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.536T>A
  hgvsp: ENSP00000398929.1:p.Ser180Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1372T>A
  hgvsp: ENSP00000443078.1:p.Ser458Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1474T>A
  hgvsp: ENSP00000437405.1:p.Ser492Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1609T>A
  hgvsp: ENSP00000367203.4:p.Ser537Thr
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42199
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser537Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-44922751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922751
    reference: chr 0
allele count: 1
allele frequency: 1.144125487683489e-5
allele num: 87403
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1633G>A
  hgvsp: ENSP00000372355.4:p.Val545Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1375G>A
  hgvsp: ENSP00000443078.1:p.Val459Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1612G>A
  hgvsp: ENSP00000367203.4:p.Val538Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.404G>A
  hgvsp: ENSP00000405910.1:p.Val136Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.539G>A
  hgvsp: ENSP00000398929.1:p.Val181Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1477G>A
  hgvsp: ENSP00000437405.1:p.Val493Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.501G>A
  hgvsp: ENSP00000399980.1:p.Val168Ile
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val538Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

X-44922795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922795
    reference: chr 0
allele count: 5
allele frequency: 5.739935023935529e-5
allele num: 87109
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1656C>T
  hgvsp: ENST00000377967.4:c.1656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1677C>T
  hgvsp: ENST00000382899.4:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.545C>T
  hgvsp: ENST00000451692.1:c.545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.448C>T
  hgvsp: ENST00000414389.1:c.448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1419C>T
  hgvsp: ENST00000543216.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.583C>T
  hgvsp: ENST00000433797.1:c.583C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1521C>T
  hgvsp: ENST00000536777.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25019
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser552Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-44922814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922814
    reference: chr 0
allele count: 1
allele frequency: 1.155561718551388e-5
allele num: 86538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1438C>T
  hgvsp: ENSP00000443078.1:p.Arg480Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1696C>T
  hgvsp: ENSP00000372355.4:p.Arg566Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1675C>T
  hgvsp: ENSP00000367203.4:p.Arg559Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.467C>T
  hgvsp: ENSP00000405910.1:p.Arg157Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.602C>T
  hgvsp: ENSP00000398929.1:p.Arg202Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.564C>T
  hgvsp: ENSP00000399980.1:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1540C>T
  hgvsp: ENSP00000437405.1:p.Arg514Cys
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg559Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-44922815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922815
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922815
    reference: chr 0
allele count: 5
allele frequency: 5.782151654273589e-5
allele num: 86473
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1697G>A
  hgvsp: ENSP00000372355.4:p.Arg566His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1439G>A
  hgvsp: ENSP00000443078.1:p.Arg480His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.603G>A
  hgvsp: ENSP00000398929.1:p.Arg202His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1676G>A
  hgvsp: ENSP00000367203.4:p.Arg559His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.565G>A
  hgvsp: ENSP00000399980.1:p.Arg189His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1541G>A
  hgvsp: ENSP00000437405.1:p.Arg514His
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.468G>A
  hgvsp: ENSP00000405910.1:p.Arg157His
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24345
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg559His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-44922817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922817
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922817
    reference: chr 0
allele count: 2
allele frequency: 2.317040675649061e-5
allele num: 86317
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.605C>T
  hgvsp: ENSP00000398929.1:p.Pro203Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1543C>T
  hgvsp: ENSP00000437405.1:p.Pro515Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1678C>T
  hgvsp: ENSP00000367203.4:p.Pro560Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.470C>T
  hgvsp: ENSP00000405910.1:p.Pro158Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1699C>T
  hgvsp: ENSP00000372355.4:p.Pro567Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.567C>T
  hgvsp: ENSP00000399980.1:p.Pro190Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1441C>T
  hgvsp: ENSP00000443078.1:p.Pro481Ser
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro560Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-44922818-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922818
    reference: chr 0
allele count: 1
allele frequency: 1.158533759673757e-5
allele num: 86316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.568C>G
  hgvsp: ENSP00000399980.1:p.Pro190Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.471C>G
  hgvsp: ENSP00000405910.1:p.Pro158Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1442C>G
  hgvsp: ENSP00000443078.1:p.Pro481Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.606C>G
  hgvsp: ENSP00000398929.1:p.Pro203Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1700C>G
  hgvsp: ENSP00000372355.4:p.Pro567Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1544C>G
  hgvsp: ENSP00000437405.1:p.Pro515Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1679C>G
  hgvsp: ENSP00000367203.4:p.Pro560Arg
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro560Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-44922819-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922819
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922819
    reference: chr 0
allele count: 4
allele frequency: 4.63456458265746e-5
allele num: 86308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1443T>C
  hgvsp: ENST00000543216.1:c.1443T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1680T>C
  hgvsp: ENST00000377967.4:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1701T>C
  hgvsp: ENST00000382899.4:c.1701T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.569T>C
  hgvsp: ENST00000451692.1:c.569T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.607T>C
  hgvsp: ENST00000433797.1:c.607T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.472T>C
  hgvsp: ENST00000414389.1:c.472T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1545T>C
  hgvsp: ENST00000536777.1:c.1545T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro560Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-44922820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922820
    reference: chr 0
allele count: 1
allele frequency: 1.159648858325699e-5
allele num: 86233
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.608G>A
  hgvsp: ENSP00000398929.1:p.Ala204Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.473G>A
  hgvsp: ENSP00000405910.1:p.Ala159Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1444G>A
  hgvsp: ENSP00000443078.1:p.Ala482Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1546G>A
  hgvsp: ENSP00000437405.1:p.Ala516Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1681G>A
  hgvsp: ENSP00000367203.4:p.Ala561Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1702G>A
  hgvsp: ENSP00000372355.4:p.Ala568Thr
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.570G>A
  hgvsp: ENSP00000399980.1:p.Ala191Thr
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala561Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-44922822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922822
    reference: chr 0
allele count: 3
allele frequency: 3.483632732213152e-5
allele num: 86117
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1683C>T
  hgvsp: ENST00000377967.4:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1704C>T
  hgvsp: ENST00000382899.4:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.475C>T
  hgvsp: ENST00000414389.1:c.475C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.572C>T
  hgvsp: ENST00000451692.1:c.572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1446C>T
  hgvsp: ENST00000543216.1:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1548C>T
  hgvsp: ENST00000536777.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.610C>T
  hgvsp: ENST00000433797.1:c.610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala561Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-44922833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922833
    reference: chr 0
allele count: 1
allele frequency: 1.171975716663151e-5
allele num: 85326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.583A>G
  hgvsp: ENSP00000399980.1:p.Gln195Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1457A>G
  hgvsp: ENSP00000443078.1:p.Gln486Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1715A>G
  hgvsp: ENSP00000372355.4:p.Gln572Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1559A>G
  hgvsp: ENSP00000437405.1:p.Gln520Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.486A>G
  hgvsp: ENSP00000405910.1:p.Gln163Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1694A>G
  hgvsp: ENSP00000367203.4:p.Gln565Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.621A>G
  hgvsp: ENSP00000398929.1:p.Gln208Arg
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln565Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-44922843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922843
    reference: chr 0
allele count: 1
allele frequency: 1.186267764359771e-5
allele num: 84298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1725C>T
  hgvsp: ENST00000382899.4:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1569C>T
  hgvsp: ENST00000536777.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.496C>T
  hgvsp: ENST00000414389.1:c.496C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.593C>T
  hgvsp: ENST00000451692.1:c.593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1467C>T
  hgvsp: ENST00000543216.1:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1704C>T
  hgvsp: ENST00000377967.4:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.631C>T
  hgvsp: ENST00000433797.1:c.631C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala568Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS

X-44922845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922845
    reference: chr 0
allele count: 1
allele frequency: 1.188961679765061e-5
allele num: 84107
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1469A>G
  hgvsp: ENSP00000443078.1:p.Asn490Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1727A>G
  hgvsp: ENSP00000372355.4:p.Asn576Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.498A>G
  hgvsp: ENSP00000405910.1:p.Asn167Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1706A>G
  hgvsp: ENSP00000367203.4:p.Asn569Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.633A>G
  hgvsp: ENSP00000398929.1:p.Asn212Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.595A>G
  hgvsp: ENSP00000399980.1:p.Asn199Ser
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1571A>G
  hgvsp: ENSP00000437405.1:p.Asn524Ser
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn569Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-44922857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922857
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922857
    reference: chr 0
allele count: 17
allele frequency: 2.061655630745349e-4
allele num: 82458
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1718C>T
  hgvsp: ENSP00000367203.4:p.Ser573Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1739C>T
  hgvsp: ENSP00000372355.4:p.Ser580Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1583C>T
  hgvsp: ENSP00000437405.1:p.Ser528Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1481C>T
  hgvsp: ENSP00000443078.1:p.Ser494Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.607C>T
  hgvsp: ENSP00000399980.1:p.Ser203Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.510C>T
  hgvsp: ENSP00000405910.1:p.Ser171Phe
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.645C>T
  hgvsp: ENSP00000398929.1:p.Ser216Phe
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19219
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser573Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

X-44922860-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922860
    reference: chr 0
allele count: 1
allele frequency: 1.220196695707348e-5
allele num: 81954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1586C>A
  hgvsp: ENSP00000437405.1:p.Ala529Glu
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.610C>A
  hgvsp: ENSP00000399980.1:p.Ala204Glu
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.648C>A
  hgvsp: ENSP00000398929.1:p.Ala217Glu
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1742C>A
  hgvsp: ENSP00000372355.4:p.Ala581Glu
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.513C>A
  hgvsp: ENSP00000405910.1:p.Ala172Glu
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1484C>A
  hgvsp: ENSP00000443078.1:p.Ala495Glu
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1721C>A
  hgvsp: ENSP00000367203.4:p.Ala574Glu
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala574Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

X-44922880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922880
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922880
    reference: chr 0
allele count: 184
allele frequency: 2.335381022490735e-3
allele num: 78788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.630A>G
  hgvsp: ENSP00000399980.1:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1762A>G
  hgvsp: ENSP00000372355.4:p.Thr588Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1504A>G
  hgvsp: ENSP00000443078.1:p.Thr502Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.533A>G
  hgvsp: ENSP00000405910.1:p.Thr179Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1606A>G
  hgvsp: ENSP00000437405.1:p.Thr536Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.668A>G
  hgvsp: ENSP00000398929.1:p.Thr224Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1741A>G
  hgvsp: ENSP00000367203.4:p.Thr581Ala
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16511
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16478
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 12915
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 27036
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Thr581Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-44922890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922890
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922890
    reference: chr 0
allele count: 83
allele frequency: 1.071631462066829e-3
allele num: 77452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.543C>T
  hgvsp: ENSP00000405910.1:p.Thr182Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1616C>T
  hgvsp: ENSP00000437405.1:p.Thr539Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1772C>T
  hgvsp: ENSP00000372355.4:p.Thr591Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1514C>T
  hgvsp: ENSP00000443078.1:p.Thr505Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1751C>T
  hgvsp: ENSP00000367203.4:p.Thr584Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.678C>T
  hgvsp: ENSP00000398929.1:p.Thr227Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.640C>T
  hgvsp: ENSP00000399980.1:p.Thr214Met
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15436
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16079
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25966
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14248
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 5.25e1
  variant carriers: 2
hgvs: p.Thr584Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

X-44922891-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922891
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922891
    reference: chr 0
allele count: 1
allele frequency: 1.294783318011731e-5
allele num: 77233
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.544G>T
  hgvsp: ENST00000414389.1:c.544G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1752G>T
  hgvsp: ENST00000377967.4:c.1752G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.641G>T
  hgvsp: ENST00000451692.1:c.641G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1515G>T
  hgvsp: ENST00000543216.1:c.1515G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.679G>T
  hgvsp: ENST00000433797.1:c.679G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1773G>T
  hgvsp: ENST00000382899.4:c.1773G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1617G>T
  hgvsp: ENST00000536777.1:c.1617G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16144
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8657
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genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
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genotype quality: GenotypeQuality
  all individuals: 358
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr584Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

X-44922898-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922898
    reference: chr 0
allele count: 1
allele frequency: 1.308643590918014e-5
allele num: 76415
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1522A>C
  hgvsp: ENSP00000443078.1:p.Ser508Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1624A>C
  hgvsp: ENSP00000437405.1:p.Ser542Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000399980
  ensembl transcript: ENST00000451692
  gene symbol: KDM6A
  hgvsc: ENST00000451692.1:c.648A>C
  hgvsp: ENSP00000399980.1:p.Ser217Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.551A>C
  hgvsp: ENSP00000405910.1:p.Ser185Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.686A>C
  hgvsp: ENSP00000398929.1:p.Ser230Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1780A>C
  hgvsp: ENSP00000372355.4:p.Ser594Arg
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1759A>C
  hgvsp: ENSP00000367203.4:p.Ser587Arg
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15317
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genotype quality: GenotypeQuality
  all individuals: 279
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genotype quality: GenotypeQuality
  all individuals: 3864
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genotype quality: GenotypeQuality
  all individuals: 2032
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser587Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-44922929-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922929
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922929
    reference: chr 0
allele count: 1
allele frequency: 1.395206071936825e-5
allele num: 71674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1553A>C
  hgvsp: ENSP00000443078.1:p.His518Pro
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1790A>C
  hgvsp: ENSP00000367203.4:p.His597Pro
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.717A>C
  hgvsp: ENSP00000398929.1:p.His240Pro
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1811A>C
  hgvsp: ENSP00000372355.4:p.His604Pro
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1655A>C
  hgvsp: ENSP00000437405.1:p.His552Pro
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.582A>C
  hgvsp: ENSP00000405910.1:p.His195Pro
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His597Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

X-44922931-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922931
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922931
    reference: chr 0
allele count: 26
allele frequency: 3.638348189921776e-4
allele num: 71461
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1792A>G
  hgvsp: ENSP00000367203.4:p.Ile598Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.719A>G
  hgvsp: ENSP00000398929.1:p.Ile241Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1555A>G
  hgvsp: ENSP00000443078.1:p.Ile519Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1657A>G
  hgvsp: ENSP00000437405.1:p.Ile553Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1813A>G
  hgvsp: ENSP00000372355.4:p.Ile605Val
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.584A>G
  hgvsp: ENSP00000405910.1:p.Ile196Val
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10172
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14035
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 9.75e1
  variant carriers: 16
hgvs: p.Ile598Val
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-44922934-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922934
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922934
    reference: chr 0
allele count: 3
allele frequency: 4.22904508162057e-5
allele num: 70938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1558A>G
  hgvsp: ENSP00000443078.1:p.Thr520Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1816A>G
  hgvsp: ENSP00000372355.4:p.Thr606Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1660A>G
  hgvsp: ENSP00000437405.1:p.Thr554Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1795A>G
  hgvsp: ENSP00000367203.4:p.Thr599Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.587A>G
  hgvsp: ENSP00000405910.1:p.Thr197Ala
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.722A>G
  hgvsp: ENSP00000398929.1:p.Thr242Ala
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21042
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr599Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-44922935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922935
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922935
    reference: chr 0
allele count: 1
allele frequency: 1.41306805335745e-5
allele num: 70768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.723C>T
  hgvsp: ENSP00000398929.1:p.Thr242Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1661C>T
  hgvsp: ENSP00000437405.1:p.Thr554Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1817C>T
  hgvsp: ENSP00000372355.4:p.Thr606Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.588C>T
  hgvsp: ENSP00000405910.1:p.Thr197Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1796C>T
  hgvsp: ENSP00000367203.4:p.Thr599Ile
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1559C>T
  hgvsp: ENSP00000443078.1:p.Thr520Ile
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr599Ile
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-44922958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24044922958
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24044922958
    reference: chr 0
allele count: 1
allele frequency: 1.494656602645542e-5
allele num: 66905
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000398929
  ensembl transcript: ENST00000433797
  gene symbol: KDM6A
  hgvsc: ENST00000433797.1:c.746G>A
  hgvsp: ENSP00000398929.1:p.Val250Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000437405
  ensembl transcript: ENST00000536777
  gene symbol: KDM6A
  hgvsc: ENST00000536777.1:c.1684G>A
  hgvsp: ENSP00000437405.1:p.Val562Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000367203
  ensembl transcript: ENST00000377967
  gene symbol: KDM6A
  hgvsc: ENST00000377967.4:c.1819G>A
  hgvsp: ENSP00000367203.4:p.Val607Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000405910
  ensembl transcript: ENST00000414389
  gene symbol: KDM6A
  hgvsc: ENST00000414389.1:c.611G>A
  hgvsp: ENSP00000405910.1:p.Val205Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000372355
  ensembl transcript: ENST00000382899
  gene symbol: KDM6A
  hgvsc: ENST00000382899.4:c.1840G>A
  hgvsp: ENSP00000372355.4:p.Val614Met
  variant of: http://identifiers.org/hgnc/12637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147050
  ensembl protein: ENSP00000443078
  ensembl transcript: ENST00000543216
  gene symbol: KDM6A
  hgvsc: ENST00000543216.1:c.1582G>A
  hgvsp: ENSP00000443078.1:p.Val528Met
  variant of: http://identifiers.org/hgnc/12637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18688
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val607Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

GenotypeQuality
all individuals: 902
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.552312946289972e-4
allele num: 6442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6387
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28801
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2895
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

DP
type: SiteQuality
SIO_000300: 8.27455e5

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 5.788e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

QD
type: SiteQuality
SIO_000300: 1.023e1

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6375
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28276
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.777777777777778e-4
allele num: 5625
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3707
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

DP
type: SiteQuality
SIO_000300: 8.13093e5

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.201090745069095e-5
allele num: 24387
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.732e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

DP
type: SiteQuality
SIO_000300: 7.75796e5

FS
type: SiteQuality
SIO_000300: 5.113e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 2952
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4911
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5401
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.341408352869671e-5
allele num: 23034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.037e1

MQ
type: SiteQuality
SIO_000300: 5.82e1

VQSLOD
type: SiteQuality
SIO_000300: -6.066e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

DP
type: SiteQuality
SIO_000300: 7.70665e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5651
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2939
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6939
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.726519337016575e-4
allele num: 5792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 413
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.20942e5

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.75e-1

QD
type: SiteQuality
SIO_000300: 3.116e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.705e0

GenotypeQuality
all individuals: 1670
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 425
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7295
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5813
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.454828122300916e-5
allele num: 28945
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.694e0

VQSLOD
type: SiteQuality
SIO_000300: -9.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.23499e5

QD
type: SiteQuality
SIO_000300: 9.23e0

GenotypeQuality
all individuals: 611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6050
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.036914143508917e-4
allele num: 28932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.442169022209403e-4
allele num: 6934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 413
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.35422e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 1.505e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.605e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6040
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4437
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4533
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6943
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7293
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4677
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.39777e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.575e-1

QD
type: SiteQuality
SIO_000300: 6.3e0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7431
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5177
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 461
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.616088947024199e-4
allele num: 7645
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.108739e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 2.412e1

VQSLOD
type: SiteQuality
SIO_000300: -2.237e0

MQRankSum
type: SiteQuality
SIO_000300: -1.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e0

GenotypeQuality
all individuals: 685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7655
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5405
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.973623955514586e-5
allele num: 33629
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.154954e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 1.127e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.018e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5405
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.306335728282169e-4
allele num: 7655
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 481
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33629
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.154954e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQ
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SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 1.127e0

QD
type: SiteQuality
SIO_000300: 1.018e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.467878514169583e-5
allele num: 35428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3579
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.475143826523086e-4
allele num: 6779
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 1.201315e6

MQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

QD
type: SiteQuality
SIO_000300: 1.803e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: -5.014999999999999e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 2419
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variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3601
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.469723691945914e-4
allele num: 6804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8057
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 1.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 6.77e-1

DP
type: SiteQuality
SIO_000300: 1.211844e6

FS
type: SiteQuality
SIO_000300: 1.596e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

GenotypeQuality
all individuals: 861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8057
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3601
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.255335174491589e-4
allele num: 7966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.211844e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

FS
type: SiteQuality
SIO_000300: 1.596e0

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2509
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GenotypeQuality
all individuals: 14578
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3731
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.434926101305783e-4
allele num: 6969
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.255e0

QD
type: SiteQuality
SIO_000300: 1.158e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.88e-1

DP
type: SiteQuality
SIO_000300: 1.241359e6

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38328
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8669
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7585
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4121
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6307
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.128158844765343e-4
allele num: 8864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.606e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

DP
type: SiteQuality
SIO_000300: 1.352834e6

QD
type: SiteQuality
SIO_000300: 3.096e1

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4199
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.300897619357356e-4
allele num: 7687
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.723665564478035e-5
allele num: 42340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8765
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6391
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 2.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

FS
type: SiteQuality
SIO_000300: 2.621e0

DP
type: SiteQuality
SIO_000300: 1.378541e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 2996
bin: 6.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 526
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.215820961666297e-4
allele num: 9026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4213
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.383119e6

QD
type: SiteQuality
SIO_000300: 2.729e1

VQSLOD
type: SiteQuality
SIO_000300: -2.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 318
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 829
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GenotypeQuality
all individuals: 40116
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42727
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.557389814670612e-4
allele num: 6421
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.136621959536258e-4
allele num: 8798
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.877e1

VQSLOD
type: SiteQuality
SIO_000300: -2.772e0

QD
type: SiteQuality
SIO_000300: 1.014e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.165e0

FS
type: SiteQuality
SIO_000300: 2.2827e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.56e-1

DP
type: SiteQuality
SIO_000300: 1.387283e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

GenotypeQuality
all individuals: 3117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 443
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7899
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9201
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.539408866995074e-4
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8905
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43936
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 1.417677e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 3.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3124
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1132
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.230897936419409e-5
allele num: 44825
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

DP
type: SiteQuality
SIO_000300: 1.440837e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.71e1

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8286
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8867
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

DP
type: SiteQuality
SIO_000300: 1.401833e6

QD
type: SiteQuality
SIO_000300: 2.298e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.723e0

VQSLOD
type: SiteQuality
SIO_000300: -1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3496
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2984
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.127418765972983e-5
allele num: 43824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7941
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9183
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

DP
type: SiteQuality
SIO_000300: 1.391772e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.829e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.853e1

QD
type: SiteQuality
SIO_000300: 1.669e1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9720
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43605
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262785705265816e-4
allele num: 7919
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8785
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

MQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

DP
type: SiteQuality
SIO_000300: 1.380166e6

QD
type: SiteQuality
SIO_000300: 1.043e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeQuality
all individuals: 401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37030
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3497
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 907
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6413
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.267909217700013e-4
allele num: 7887
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.364897e6

QD
type: SiteQuality
SIO_000300: 3.126e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

GenotypeQuality
all individuals: 1333
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 13888
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 741
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3638
bin: 9.75e1
variant carriers: 162

GenotypeQuality
all individuals: 2661
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 554
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 8

African
type: Population
allele count: 2
allele frequency: 2.585983966899405e-4
allele num: 7734
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.836348780203105e-4
allele num: 8567
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.53356890459364e-3
allele num: 566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 21
allele frequency: 5.092143549951503e-3
allele num: 4124
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.340385257766396e-4
allele num: 8981
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 186
allele frequency: 4.425094568553279e-3
allele num: 42033
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6283
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.309393e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.066e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.315e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.633e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.804e1

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41187
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.61745844784714e-4
allele num: 7641
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 555
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6197
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.67e1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 1.258202e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.206e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 21347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19043
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3037
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 268
bin: 5.25e1
variant carriers: 3

South Asian
type: Population
allele count: 43
allele frequency: 4.966504966504966e-3
allele num: 8658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5993
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7465
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8197
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3935
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39534
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.879e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.945e0

DP
type: SiteQuality
SIO_000300: 1.17075e6

QD
type: SiteQuality
SIO_000300: 1.732e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.15e-2

FS
type: SiteQuality
SIO_000300: 3.205e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 519
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.187789523696401e-4
allele num: 8419
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7983
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5799
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.057e1

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

DP
type: SiteQuality
SIO_000300: 1.088551e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -2.975e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2889
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4049
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 316
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.260239445494644e-4
allele num: 7935
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7237
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.424e0

VQSLOD
type: SiteQuality
SIO_000300: -2.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.073164e6

QD
type: SiteQuality
SIO_000300: 1.82e1

GenotypeQuality
all individuals: 1659
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17665
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3486
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3749
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 507
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7183
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36617
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

QD
type: SiteQuality
SIO_000300: 2.459e1

DP
type: SiteQuality
SIO_000300: 1.063659e6

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3297
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3725
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.747403703500192e-5
allele num: 36398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.149e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.67e-1

DP
type: SiteQuality
SIO_000300: 1.057849e6

VQSLOD
type: SiteQuality
SIO_000300: -4.599e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

GenotypeQuality
all individuals: 314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15468
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 522
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.754820936639118e-4
allele num: 3630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7005
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7679
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5539
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8133
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.139e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 1.030639e6

GenotypeQuality
all individuals: 6861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1861
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6347
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001101211332466e-4
allele num: 9989
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44453
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 5.541e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

DP
type: SiteQuality
SIO_000300: 1.520281e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.901e0

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
all individuals: 910
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.250427581240436e-5
allele num: 44436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4485
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9991
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.691e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 4.489e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.524509e6

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

QD
type: SiteQuality
SIO_000300: 1.811e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.08e-1

GenotypeQuality
all individuals: 2080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.303183107469272e-4
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4485
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9991
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.811e1

FS
type: SiteQuality
SIO_000300: 4.489e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.691e0

DP
type: SiteQuality
SIO_000300: 1.524509e6

VQSLOD
type: SiteQuality
SIO_000300: -1.08e-1

GenotypeQuality
all individuals: 314
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9997
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.247393024092053e-5
allele num: 44496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6831
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.533771e6

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.734e0

VQSLOD
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
all individuals: 37512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44555
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e0

QD
type: SiteQuality
SIO_000300: 2.905e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.54789e6

MQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.206e0

VQSLOD
type: SiteQuality
SIO_000300: -3.652e0

GenotypeQuality
all individuals: 483
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6363
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9171
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6880
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 1.558207e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

FS
type: SiteQuality
SIO_000300: 1.479e0

QD
type: SiteQuality
SIO_000300: 8.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.693e-1

GenotypeQuality
all individuals: 1164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7122
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.115200178432029e-4
allele num: 44835
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

FS
type: SiteQuality
SIO_000300: 5.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.65e0

QD
type: SiteQuality
SIO_000300: 2.057e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.416e-1

DP
type: SiteQuality
SIO_000300: 1.573225e6

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.63e-1

GenotypeQuality
all individuals: 850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.562744178777934e-4
allele num: 6399
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.586537e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

FS
type: SiteQuality
SIO_000300: 1.154e0

QD
type: SiteQuality
SIO_000300: 1.338e1

GenotypeQuality
all individuals: 40591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45261
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7173
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.5600624024961e-4
allele num: 6410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10047
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.164e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.767e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

VQSLOD
type: SiteQuality
SIO_000300: -3.561e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 1.587639e6

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
all individuals: 1979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.200994849672052e-5
allele num: 45434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 4.145e0

DP
type: SiteQuality
SIO_000300: 1.593052e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e0

VQSLOD
type: SiteQuality
SIO_000300: 4.81e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

QD
type: SiteQuality
SIO_000300: 1.391e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 2136
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6465
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.930486593843098e-5
allele num: 10070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8035
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.41e-1

QD
type: SiteQuality
SIO_000300: 3.126e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQ
type: SiteQuality
SIO_000300: 5.885e1

DP
type: SiteQuality
SIO_000300: 1.614032e6

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.448284756254837e-5
allele num: 46524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6467
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 1.615188e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.526e1

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 2137
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8101
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.082251082251082e-4
allele num: 9240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46657
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.26e0

DP
type: SiteQuality
SIO_000300: 1.61738e6

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

FS
type: SiteQuality
SIO_000300: 2.599e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

QD
type: SiteQuality
SIO_000300: 1.965e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42637
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111085308957335e-5
allele num: 47369
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6549
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

DP
type: SiteQuality
SIO_000300: 1.630251e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.669e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
all individuals: 42531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 125
bin: 3.75e1
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GenotypeQuality
all individuals: 436
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7453
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10101
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.093013520867345e-5
allele num: 47778
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636465e6

VQSLOD
type: SiteQuality
SIO_000300: -4.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

QD
type: SiteQuality
SIO_000300: 3.411e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.675e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 438
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 487
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GenotypeQuality
all individuals: 2022
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variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.181055863942365e-4
allele num: 8467
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10101
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e0

DP
type: SiteQuality
SIO_000300: 1.634395e6

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078515962036238e-4
allele num: 9272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10101
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47793
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

DP
type: SiteQuality
SIO_000300: 1.633309e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.772e1

FS
type: SiteQuality
SIO_000300: 2.458e0

VQSLOD
type: SiteQuality
SIO_000300: -2.442e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.333e0

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 7098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9243
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.049207848074704e-4
allele num: 47655
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4479
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.769e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.95e-2

DP
type: SiteQuality
SIO_000300: 1.618967e6

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 386
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40320
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111129876710015e-5
allele num: 47368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9201
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 3.662e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.597613e6

QD
type: SiteQuality
SIO_000300: 1.194e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.814e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

GenotypeQuality
all individuals: 2106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1865
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variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.338474540460596e-5
allele num: 47330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.176278563656148e-4
allele num: 9190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9911
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.672e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -5.115e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.24e-2

DP
type: SiteQuality
SIO_000300: 1.596859e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2436
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
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variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 614
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GenotypeQuality
all individuals: 6695
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variant carriers: 0

GenotypeQuality
all individuals: 430
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variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.023267577137076e-4
allele num: 9885
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47245
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4387
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.588859e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
all individuals: 551
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GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 3021
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GenotypeQuality
all individuals: 1014
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variant carriers: 0

GenotypeQuality
all individuals: 500
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variant carriers: 0

GenotypeQuality
all individuals: 6691
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4387
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9179
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.011736139214893e-4
allele num: 9884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

QD
type: SiteQuality
SIO_000300: 2.91e1

VQSLOD
type: SiteQuality
SIO_000300: -3.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.588819e6

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.089799476896251e-4
allele num: 9176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4385
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.559563360227812e-4
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47244
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

QD
type: SiteQuality
SIO_000300: 1.659e1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 1.588727e6

FS
type: SiteQuality
SIO_000300: 1.744e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.260000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4383
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8423
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.118868524208073e-5
allele num: 47195
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.586661e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: -1.977e-1

FS
type: SiteQuality
SIO_000300: 6.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 353
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
all individuals: 395
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 390
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GenotypeQuality
all individuals: 39680
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variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.271537622682661e-4
allele num: 9170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6559
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4371
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.623e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

FS
type: SiteQuality
SIO_000300: 3.249e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.506e0

QD
type: SiteQuality
SIO_000300: 1.378e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.19e-1

DP
type: SiteQuality
SIO_000300: 1.582228e6

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4008
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9771
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46649
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.536098310291859e-4
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4309
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.984e0

DP
type: SiteQuality
SIO_000300: 1.553472e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

FS
type: SiteQuality
SIO_000300: 2.845e0

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6441
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.038529442309689e-4
allele num: 9629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46086
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.517498e6

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

QD
type: SiteQuality
SIO_000300: 3.287e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5752
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.554243083618278e-4
allele num: 6434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9607
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45967
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8967
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.399e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.508897e6

QD
type: SiteQuality
SIO_000300: 6.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 8293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32825
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1457
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 369
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1088
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8235
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44977
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.809858405195358e-3
allele num: 9393
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4127
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.575e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -9.327e-1

FS
type: SiteQuality
SIO_000300: 5.958e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.835e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.455689e6

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8878
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4093
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8211
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9331
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.238638907544213e-5
allele num: 44670
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.308e1

DP
type: SiteQuality
SIO_000300: 1.441417e6

FS
type: SiteQuality
SIO_000300: 1.523e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

GenotypeQuality
all individuals: 270
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3098
bin: 9.75e1
variant carriers: 158

GenotypeQuality
all individuals: 751
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1832
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 347
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1183
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1026
bin: 5.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.673443159247576e-5
allele num: 42795
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6099
num of homozygotes: 0

African
type: Population
allele count: 173
allele frequency: 2.148801391131536e-2
allele num: 8051
num of homozygotes: 1

Latino
type: Population
allele count: 9
allele frequency: 1.064836725035495e-3
allele num: 8452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3883
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.916e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.639e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.356082e6

GenotypeQuality
all individuals: 1033
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 425
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 398
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 617
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 3

Latino
type: Population
allele count: 2
allele frequency: 2.402113860196973e-4
allele num: 8326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.58144438587243e-3
allele num: 3794
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.662234042553191e-4
allele num: 6016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.689993335237551e-3
allele num: 42012
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.137527016266636e-4
allele num: 8791
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.25549278091651e-4
allele num: 7965
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

DP
type: SiteQuality
SIO_000300: 1.316069e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.523e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 385
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25951
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3775
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.387033633303893e-5
allele num: 41893
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.555e1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 1.309999e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.465e0

GenotypeQuality
all individuals: 25950
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3721
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.265182186234818e-4
allele num: 7904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41423
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5943
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8219
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 1.289414e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.376e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.77e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1

GenotypeQuality
all individuals: 19120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 738
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7711
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.330671989354624e-4
allele num: 7515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

QD
type: SiteQuality
SIO_000300: 1.246e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 4.861e0

DP
type: SiteQuality
SIO_000300: 1.193156e6

VQSLOD
type: SiteQuality
SIO_000300: -2.444e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 5.465e1

GenotypeQuality
all individuals: 659
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 781
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3399
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 2.846886990964228e-3
allele num: 8079
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.756748371082842e-5
allele num: 38676
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 1.190426e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.486e1

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeQuality
all individuals: 1485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7457
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.81372089388967e-5
allele num: 38394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3355
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.180448e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.082e1

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.375e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

GenotypeQuality
all individuals: 1129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7445
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.612193720286296e-5
allele num: 38282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5553
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8017
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.178004e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.391e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 2.241e1

GenotypeQuality
all individuals: 707
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21722
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.768625930950469e-5
allele num: 36119
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7201
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 467
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 1.117343e6

VQSLOD
type: SiteQuality
SIO_000300: -2.196e0

FS
type: SiteQuality
SIO_000300: 1.019e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.449e0