19-39805784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805784
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805784
    reference: chr 19
allele count: 2
allele frequency: 2.665600426496068e-5
allele num: 75030
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.384C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.193C>T
  hgvsp: ENSP00000248668.4:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg65Trp
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4726
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-39805788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805788
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805788
    reference: chr 19
allele count: 1
allele frequency: 1.342101731311233e-5
allele num: 74510
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.189C>T
  hgvsp: ENST00000248668.4:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.380C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 178
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile63Ile
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2638
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-39805793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805793
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805793
    reference: chr 19
allele count: 2
allele frequency: 2.71333604666938e-5
allele num: 73710
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.184G>A
  hgvsp: ENSP00000248668.4:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.375G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 18762
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala62Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7052
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-39805794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805794
    reference: chr 19
allele count: 2
allele frequency: 2.712452871131364e-5
allele num: 73734
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.183C>T
  hgvsp: ENST00000248668.4:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.374C>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
hgvs: p.Pro61Pro
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11258
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-39805794-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805794
    reference: chr 19
allele count: 4
allele frequency: 5.424905742262728e-5
allele num: 73734
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.183C>A
  hgvsp: ENST00000248668.4:c.183C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.374C>A
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 768
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genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 19574
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 130
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  variant carriers: 1
hgvs: p.Pro61Pro
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 474
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

19-39805795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805795
    reference: chr 19
allele count: 1
allele frequency: 1.355932203389831e-5
allele num: 73750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.373C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.182C>T
  hgvsp: ENSP00000248668.4:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro61Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.381519409383187e-5
  allele num: 41990
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-39805796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805796
    reference: chr 19
allele count: 1
allele frequency: 1.365113167881617e-5
allele num: 73254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.372C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.181C>T
  hgvsp: ENSP00000248668.4:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro61Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2588
  num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/19-39805797-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805797
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805797
    reference: chr 19
allele count: 3
allele frequency: 4.124164856616535e-5
allele num: 72742
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.180G>T
  hgvsp: ENST00000248668.4:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.371G>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro60Pro
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6942
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

19-39805808-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805808
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805808
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 69372
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.169C>G
  hgvsp: ENSP00000248668.4:p.Leu57Val
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.360C>G
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16659
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu57Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10820
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-39805818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805818
    reference: chr 19
allele count: 1
allele frequency: 1.524064986131009e-5
allele num: 65614
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.350G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.159G>T
  hgvsp: ENSP00000248668.4:p.Lys53Asn
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12589
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 128
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 915
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 5223
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
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  variant carriers: 0
hgvs: p.Lys53Asn
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6064
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

19-39805821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805821
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805821
    reference: chr 19
allele count: 5
allele frequency: 7.742574870699e-5
allele num: 64578
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.347C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.156C>T
  hgvsp: ENST00000248668.4:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 411
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 69
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala52Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2152
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-39805823-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805823
    reference: chr 19
allele count: 1
allele frequency: 1.577784790154623e-5
allele num: 63380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.345G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.154G>T
  hgvsp: ENSP00000248668.4:p.Ala52Ser
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22158
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala52Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2088
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

19-39805827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805827
    reference: chr 19
allele count: 1
allele frequency: 1.630842493232004e-5
allele num: 61318
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.150G>A
  hgvsp: ENST00000248668.4:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.341G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 664
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu50Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5590
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-39805830-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805830
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805830
    reference: chr 19
allele count: 1
allele frequency: 1.654971534489607e-5
allele num: 60424
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.147G>C
  hgvsp: ENSP00000248668.4:p.Met49Ile
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.338G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11955
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met49Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9760
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-39805839-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805839
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805839
    reference: chr 19
allele count: 3
allele frequency: 5.440893757481229e-5
allele num: 55138
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.329A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.138A>G
  hgvsp: ENST00000248668.4:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15630
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 424
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr46Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1760
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-39805839-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805839
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805839
    reference: chr 19
allele count: 2
allele frequency: 3.627262504987486e-5
allele num: 55138
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.138A>C
  hgvsp: ENST00000248668.4:c.138A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.329A>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15630
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr46Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3572
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

19-39805846-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805846
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805846
    reference: chr 19
allele count: 1
allele frequency: 2.040982937382644e-5
allele num: 48996
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.322C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.131C>G
  hgvsp: ENSP00000248668.4:p.Ala44Gly
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala44Gly
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3744
  num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

19-39805850-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805850
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805850
    reference: chr 19
allele count: 1
allele frequency: 2.113986132250972e-5
allele num: 47304
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.318G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.127G>C
  hgvsp: ENSP00000248668.4:p.Val43Leu
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val43Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3612
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-39805850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805850
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805850
    reference: chr 19
allele count: 1
allele frequency: 2.113986132250972e-5
allele num: 47304
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.127G>A
  hgvsp: ENSP00000248668.4:p.Val43Met
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.318G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val43Met
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 306
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-39805857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805857
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805857
    reference: chr 19
allele count: 8
allele frequency: 1.931247585940518e-4
allele num: 41424
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.311C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.120C>T
  hgvsp: ENST00000248668.4:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15010
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26962
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32659
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
hgvs: p.Cys40Cys
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3330
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

19-39805869-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805869
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805869
    reference: chr 19
allele count: 2
allele frequency: 6.316720358789716e-5
allele num: 31662
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.108C>A
  hgvsp: ENST00000248668.4:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.299C>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13760
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly36Gly
num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 17678
  num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

19-39805871-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805871
    reference: chr 19
allele count: 1
allele frequency: 3.307534563736191e-5
allele num: 30234
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.106G>C
  hgvsp: ENSP00000248668.4:p.Gly36Arg
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.297G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14050
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly36Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 5.102040816326531e-4
  allele num: 1960
  num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-39805871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805871
    reference: chr 19
allele count: 81
allele frequency: 2.679102996626315e-3
allele num: 30234
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.106G>A
  hgvsp: ENSP00000248668.4:p.Gly36Ser
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.297G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11943
  bin: 1.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 28662
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14078
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 117
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genotype quality: GenotypeQuality
  all individuals: 1343
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 175
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genotype quality: GenotypeQuality
  all individuals: 2379
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genotype quality: GenotypeQuality
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30070
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 14050
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genotype quality: GenotypeQuality
  all individuals: 123
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 5
hgvs: p.Gly36Ser
num of homozygotes: 2
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2242
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-39805887-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805887
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805887
    reference: chr 19
allele count: 1
allele frequency: 4.327131112072696e-5
allele num: 23110
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.281T>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.90T>C
  hgvsp: ENST00000248668.4:c.90T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28847
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2529
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 29529
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genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg30Arg
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 12808
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-39805889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805889
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805889
    reference: chr 19
allele count: 1
allele frequency: 4.478280340349306e-5
allele num: 22330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.88C>T
  hgvsp: ENSP00000248668.4:p.Arg30Cys
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.279C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18012
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28780
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2490
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genotype quality: GenotypeQuality
  all individuals: 87
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
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genotype quality: GenotypeQuality
  all individuals: 2791
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1279
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg30Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1532
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

19-39805895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805895
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805895
    reference: chr 19
allele count: 1
allele frequency: 5.141388174807198e-5
allele num: 19450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.82G>A
  hgvsp: ENSP00000248668.4:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.273G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4078
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala28Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 460
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-39805899-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805899
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805899
    reference: chr 19
allele count: 1
allele frequency: 5.496921723834653e-5
allele num: 18192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.78G>T
  hgvsp: ENST00000248668.4:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.269G>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 26515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 335
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genotype quality: GenotypeQuality
  all individuals: 498
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala26Ala
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1076
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

19-39805946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805946
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805946
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 5182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.222C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.31C>T
  hgvsp: ENSP00000248668.4:p.Leu11Phe
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19880
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu11Phe
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 84
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-39805951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805951
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805951
    reference: chr 19
allele count: 2
allele frequency: 3.976143141153082e-4
allele num: 5030
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.26C>T
  hgvsp: ENSP00000248668.4:p.Ala9Val
  variant of: http://identifiers.org/hgnc/29290
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.217C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32905
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19793
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31950
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 151
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Ala9Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 504
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-39805952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805952
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805952
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 4918
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.216G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.25G>A
  hgvsp: ENSP00000248668.4:p.Ala9Thr
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala9Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 560
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-39805953-CGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805953
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805950
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 4756
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.212_214delCTC
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.21_23delCTC
  hgvsp: ENSP00000248668.4:p.Ser8del
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19363
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser8del
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 490
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: CGAG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/19-39805971-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805971
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805971
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 3604
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.197T>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128011
  ensembl protein: ENSP00000248668
  ensembl transcript: ENST00000248668
  gene symbol: LRFN1
  hgvsc: ENST00000248668.4:c.6T>G
  hgvsp: ENST00000248668.4:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29290
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15177
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35069
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala2Ala
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 238
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

19-39805984-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39805984
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39805983
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2784
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.183delC
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37838
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36430
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1822
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 152
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: TG
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

19-39806018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39806018
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39806018
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268262
  ensembl transcript: ENST00000601911
  gene symbol: CTC-246B18.8
  hgvsc: ENST00000601911.1:n.155-5G>A
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37640
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28746
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9581
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: n.155-5G>A
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 30
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 20
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/19-39819072-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819072
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819071
    reference: chr 19
allele count: 14
allele frequency: 1.154696314869189e-4
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*240delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*240delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*44delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*236delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*44delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*44delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*44delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*150delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*44delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*44delG
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*507delG
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: AC
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-39819093-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819093
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819093
    reference: chr 19
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*220C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*130C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*487C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*24C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*220C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*216C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-39819094-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819094
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819094
    reference: chr 19
allele count: 2
allele frequency: 1.649294102124291e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*219C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*23C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*23C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*219C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*23C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*129C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*23C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*23C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*23C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*486C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*215C>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-39819096-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819096
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819097
    reference: chr 19
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*20dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*20dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*126dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*20dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*20dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*483dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*216dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*212dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*20dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*20dupA
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*216dupA
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9150
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-39819105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819105
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819105
    reference: chr 19
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*204G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*475G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*12G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*118G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5142
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-39819106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819106
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819106
    reference: chr 19
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*207G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*203G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*11G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*117G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*474G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*207G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9147
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-39819112-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819112
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819112
    reference: chr 19
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*201T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.*5T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.*5T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*201T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*197T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*111T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.*5T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.*5T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.*5T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*468T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.*5T>C
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

19-39819117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819117
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819117
    reference: chr 19
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.282A>G
  hgvsp: ENSP00000469813.1:p.Ter94TrpextTer9
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.222A>G
  hgvsp: ENSP00000468894.1:p.Ter74TrpextTer9
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.330A>G
  hgvsp: ENSP00000253054.8:p.Ter110TrpextTer9
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*192A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*463A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*196A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.306A>G
  hgvsp: ENSP00000471786.1:p.Ter102TrpextTer9
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.330A>G
  hgvsp: ENSP00000471139.1:p.Ter110TrpextTer9
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*196A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.429A>G
  hgvsp: ENSP00000472249.1:p.Ter143TrpextTer9
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*106A>G
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter143TrpextTer9
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/19-39819121-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819121
    reference: chr 19
allele count: 2
allele frequency: 1.648940555692967e-5
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.326G>T
  hgvsp: ENSP00000471139.1:p.Arg109Leu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.302G>T
  hgvsp: ENSP00000471786.1:p.Arg101Leu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.278G>T
  hgvsp: ENSP00000469813.1:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.425G>T
  hgvsp: ENSP00000472249.1:p.Arg142Leu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*192G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*459G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*102G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*188G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.218G>T
  hgvsp: ENSP00000468894.1:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.326G>T
  hgvsp: ENSP00000253054.8:p.Arg109Leu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*192G>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg142Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-39819121-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819121
    reference: chr 19
allele count: 12
allele frequency: 9.893643334157804e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.302G>A
  hgvsp: ENSP00000471786.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.326G>A
  hgvsp: ENSP00000253054.8:p.Arg109His
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*192G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*188G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.425G>A
  hgvsp: ENSP00000472249.1:p.Arg142His
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*102G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.278G>A
  hgvsp: ENSP00000469813.1:p.Arg93His
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*459G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.218G>A
  hgvsp: ENSP00000468894.1:p.Arg73His
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.326G>A
  hgvsp: ENSP00000471139.1:p.Arg109His
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*192G>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg142His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-39819124-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819124
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819124
    reference: chr 19
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*189T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*189T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.323T>G
  hgvsp: ENSP00000471139.1:p.Phe108Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.422T>G
  hgvsp: ENSP00000472249.1:p.Phe141Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.323T>G
  hgvsp: ENSP00000253054.8:p.Phe108Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*456T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.215T>G
  hgvsp: ENSP00000468894.1:p.Phe72Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*99T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*185T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.299T>G
  hgvsp: ENSP00000471786.1:p.Phe100Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.275T>G
  hgvsp: ENSP00000469813.1:p.Phe92Cys
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Phe141Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS

19-39819143-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819143
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819143
    reference: chr 19
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.304C>G
  hgvsp: ENSP00000471139.1:p.Gln102Glu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.280C>G
  hgvsp: ENSP00000471786.1:p.Gln94Glu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.196C>G
  hgvsp: ENSP00000468894.1:p.Gln66Glu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*166C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*170C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*170C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*437C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.304C>G
  hgvsp: ENSP00000253054.8:p.Gln102Glu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*80C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.403C>G
  hgvsp: ENSP00000472249.1:p.Gln135Glu
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.256C>G
  hgvsp: ENSP00000469813.1:p.Gln86Glu
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln135Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

19-39819148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819148
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819148
    reference: chr 19
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.275G>A
  hgvsp: ENSP00000471786.1:p.Trp92Ter
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.251G>A
  hgvsp: ENSP00000469813.1:p.Trp84Ter
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.299G>A
  hgvsp: ENSP00000253054.8:p.Trp100Ter
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*432G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.191G>A
  hgvsp: ENSP00000468894.1:p.Trp64Ter
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.299G>A
  hgvsp: ENSP00000471139.1:p.Trp100Ter
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*75G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.398G>A
  hgvsp: ENSP00000472249.1:p.Trp133Ter
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*161G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp133Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

19-39819150-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819150
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819150
    reference: chr 19
allele count: 22
allele frequency: 1.814762266143135e-4
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*163C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*73C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.297C>T
  hgvsp: ENST00000253054.8:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.273C>T
  hgvsp: ENST00000601387.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*163C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.297C>T
  hgvsp: ENST00000600322.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.189C>T
  hgvsp: ENST00000594700.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.249C>T
  hgvsp: ENST00000602185.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*430C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.396C>T
  hgvsp: ENST00000597595.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*159C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala132Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

19-39819153-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819153
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819153
    reference: chr 19
allele count: 37
allele frequency: 3.052351960929895e-4
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*427G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.270G>A
  hgvsp: ENST00000601387.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.186G>A
  hgvsp: ENST00000594700.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*160G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.393G>A
  hgvsp: ENST00000597595.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*156G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.294G>A
  hgvsp: ENST00000253054.8:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*160G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.246G>A
  hgvsp: ENST00000602185.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.294G>A
  hgvsp: ENST00000600322.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu131Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-39819156-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819156
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819156
    reference: chr 19
allele count: 3
allele frequency: 2.475124993812188e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.243T>A
  hgvsp: ENST00000602185.1:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.291T>A
  hgvsp: ENST00000253054.8:c.291T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.267T>A
  hgvsp: ENST00000601387.1:c.267T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.390T>A
  hgvsp: ENST00000597595.1:c.390T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.291T>A
  hgvsp: ENST00000600322.1:c.291T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*424T>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*153T>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.183T>A
  hgvsp: ENST00000594700.1:c.183T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*67T>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*157T>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*157T>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr130Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

19-39819157-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819157
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819157
    reference: chr 19
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.389C>G
  hgvsp: ENSP00000472249.1:p.Thr130Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.182C>G
  hgvsp: ENSP00000468894.1:p.Thr61Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.290C>G
  hgvsp: ENSP00000253054.8:p.Thr97Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.290C>G
  hgvsp: ENSP00000471139.1:p.Thr97Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*66C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*156C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.266C>G
  hgvsp: ENSP00000471786.1:p.Thr89Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*156C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*152C>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.242C>G
  hgvsp: ENSP00000469813.1:p.Thr81Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*423C>G
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr130Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-39819158-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819158
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819158
    reference: chr 19
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*155A>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.388A>T
  hgvsp: ENSP00000472249.1:p.Thr130Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.289A>T
  hgvsp: ENSP00000253054.8:p.Thr97Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*65A>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.181A>T
  hgvsp: ENSP00000468894.1:p.Thr61Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.265A>T
  hgvsp: ENSP00000471786.1:p.Thr89Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*155A>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.241A>T
  hgvsp: ENSP00000469813.1:p.Thr81Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.289A>T
  hgvsp: ENSP00000471139.1:p.Thr97Ser
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*422A>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*151A>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr130Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-39819168-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819168
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819168
    reference: chr 19
allele count: 12
allele frequency: 9.906548228378958e-5
allele num: 121132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.255T>C
  hgvsp: ENST00000601387.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.279T>C
  hgvsp: ENST00000253054.8:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.171T>C
  hgvsp: ENST00000594700.1:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.231T>C
  hgvsp: ENST00000602185.1:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*145T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*55T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.378T>C
  hgvsp: ENST00000597595.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*412T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.279T>C
  hgvsp: ENST00000600322.1:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*141T>C
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*145T>C
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr126Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-39819176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819176
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819176
    reference: chr 19
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.370C>T
  hgvsp: ENSP00000472249.1:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*404C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.271C>T
  hgvsp: ENSP00000253054.8:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.163C>T
  hgvsp: ENSP00000468894.1:p.Arg55Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.247C>T
  hgvsp: ENSP00000471786.1:p.Arg83Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.271C>T
  hgvsp: ENSP00000471139.1:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.223C>T
  hgvsp: ENSP00000469813.1:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg124Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

19-39819182-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819182
    reference: chr 19
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.265G>A
  hgvsp: ENSP00000253054.8:p.Glu89Lys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.364G>A
  hgvsp: ENSP00000472249.1:p.Glu122Lys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.265G>A
  hgvsp: ENSP00000471139.1:p.Glu89Lys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*398G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.157G>A
  hgvsp: ENSP00000468894.1:p.Glu53Lys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.241G>A
  hgvsp: ENSP00000471786.1:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.217G>A
  hgvsp: ENSP00000469813.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*127G>A
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu122Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

19-39819183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819183
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819183
    reference: chr 19
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.156C>T
  hgvsp: ENST00000594700.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.240C>T
  hgvsp: ENST00000601387.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.363C>T
  hgvsp: ENST00000597595.1:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.264C>T
  hgvsp: ENST00000253054.8:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.216C>T
  hgvsp: ENST00000602185.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.264C>T
  hgvsp: ENST00000600322.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*397C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe121Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-39819190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819190
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819190
    reference: chr 19
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-2A>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*390A>G
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9067
  bin: 9.75e1
  variant carriers: 1
hgvs: c.358-2A>G
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

19-39819192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819192
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819192
    reference: chr 19
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*388C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-4C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-4C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15098
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.358-4C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-39819194-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819194
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819192
    reference: chr 19
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-8_259-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*384_*385delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-8_151-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-8_*35-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-8_259-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-8_211-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-8_*121-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-8_235-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-8_*125-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-8_358-7delCT
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-8_*125-7delCT
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.358-8_358-7delCT
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: CAG
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

19-39819196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819196
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819196
    reference: chr 19
allele count: 12
allele frequency: 9.929336223873434e-5
allele num: 120854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*384C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-8C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-8C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.358-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

19-39819198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819198
    reference: chr 19
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*382C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-10C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-10C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-39819203-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819203
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*377C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-15C>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-15C>A
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

19-39819207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819207
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819207
    reference: chr 19
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*373G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-19G>A
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-19G>A
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14642
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

19-39819208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819208
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819208
    reference: chr 19
allele count: 4
allele frequency: 3.314990386527879e-5
allele num: 120664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*372C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-20C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-20C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-39819232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819232
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819232
    reference: chr 19
allele count: 2
allele frequency: 1.663201663201663e-5
allele num: 120250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*348C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-44C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-44C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13495
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-39819233-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819233
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819233
    reference: chr 19
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*347T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-45T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-45T>G
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

19-39819240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819240
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819240
    reference: chr 19
allele count: 3
allele frequency: 2.506265664160401e-5
allele num: 119700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.211-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.358-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.259-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.259-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*125-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*121-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.235-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*125-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-52C>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*35-52C>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12426
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4491
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-39819533-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819533
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819533
    reference: chr 19
allele count: 109
allele frequency: 1.097506947521044e-3
allele num: 99316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.234+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.258+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.258+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.210+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*124+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*47G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*120+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.357+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-345G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*34+107G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*124+107G>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 14799
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 12013
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 2.5e0
  variant carriers: 5
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/19-39819534-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819534
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819534
    reference: chr 19
allele count: 1
allele frequency: 9.313588525658936e-6
allele num: 107370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*120+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.258+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*46T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.234+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.210+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*124+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*124+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.258+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*34+106T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-346T>G
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.357+106T>G
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/19-39819539-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819539
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819539
    reference: chr 19
allele count: 60
allele frequency: 5.762692329856509e-4
allele num: 104118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*41G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*124+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.234+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.258+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*120+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.258+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-351G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*124+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.210+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.357+101G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*34+101G>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17007
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/19-39819545-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819545
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819545
    reference: chr 19
allele count: 1
allele frequency: 9.123754607496077e-6
allele num: 109604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.210+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.258+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*124+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-357G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.357+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*35G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*120+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*34+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*124+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.258+95G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.234+95G>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-39819546-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39819546
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39819546
    reference: chr 19
allele count: 1
allele frequency: 9.074080795615405e-6
allele num: 110204
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472249
  ensembl transcript: ENST00000597595
  gene symbol: GMFG
  hgvsc: ENST00000597595.1:c.357+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471786
  ensembl transcript: ENST00000601387
  gene symbol: GMFG
  hgvsc: ENST00000601387.1:c.234+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000472707
  ensembl transcript: ENST00000595207
  gene symbol: GMFG
  hgvsc: ENST00000595207.1:c.*124+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000471139
  ensembl transcript: ENST00000600322
  gene symbol: GMFG
  hgvsc: ENST00000600322.1:c.258+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000468894
  ensembl transcript: ENST00000594700
  gene symbol: GMFG
  hgvsc: ENST00000594700.1:c.151-358G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000253054
  ensembl transcript: ENST00000253054
  gene symbol: GMFG
  hgvsc: ENST00000253054.8:c.258+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469877
  ensembl transcript: ENST00000598034
  gene symbol: GMFG
  hgvsc: ENST00000598034.1:c.*34G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469755
  ensembl transcript: ENST00000601731
  gene symbol: GMFG
  hgvsc: ENST00000601731.1:c.*124+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469485
  ensembl transcript: ENST00000596583
  gene symbol: GMFG
  hgvsc: ENST00000596583.1:c.*120+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469813
  ensembl transcript: ENST00000602185
  gene symbol: GMFG
  hgvsc: ENST00000602185.1:c.210+94G>T
  variant of: http://identifiers.org/hgnc/4374
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130755
  ensembl protein: ENSP00000469050
  ensembl transcript: ENST00000595636
  gene symbol: GMFG
  hgvsc: ENST00000595636.1:c.*34+94G>T
  variant of: http://identifiers.org/hgnc/4374
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7188
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.718803712616019e-4
allele num: 5818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.340057097393176e-5
allele num: 42734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.538e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 4.31e0

DP
type: SiteQuality
SIO_000300: 8.69004e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.406469760900141e-4
allele num: 7110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 4.02e0

DP
type: SiteQuality
SIO_000300: 8.64765e5

FS
type: SiteQuality
SIO_000300: 1.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.748251748251748e-4
allele num: 5720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.379819133745835e-5
allele num: 42020
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 8.67401e5

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 4.951e0

VQSLOD
type: SiteQuality
SIO_000300: -3.042e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.076e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42010
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.844141069397042e-4
allele num: 7032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

FS
type: SiteQuality
SIO_000300: 1.8863e1

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 7.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.955e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 8.66072e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.521542489883361e-5
allele num: 42010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 1.8863e1

VQSLOD
type: SiteQuality
SIO_000300: -2.955e0

DP
type: SiteQuality
SIO_000300: 8.66072e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
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MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.6397e5

VQSLOD
type: SiteQuality
SIO_000300: -8.512999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.397391637897967e-5
allele num: 41712
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.5664e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 1.451e0

QD
type: SiteQuality
SIO_000300: 1.231e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.822763443453098e-5
allele num: 41470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.005763688760806e-5
allele num: 11104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.66e0

FS
type: SiteQuality
SIO_000300: 2.2292e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.95e0

DP
type: SiteQuality
SIO_000300: 8.5869e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.19715e5

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.682835220260772e-5
allele num: 37274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 7.76379e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.8512e1

VQSLOD
type: SiteQuality
SIO_000300: -3.724e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 9.84e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.362249346120314e-4
allele num: 36704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

FS
type: SiteQuality
SIO_000300: 1.709e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

QD
type: SiteQuality
SIO_000300: 1.375e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

DP
type: SiteQuality
SIO_000300: 7.63111e5

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.71939477303989e-4
allele num: 5816
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.5633e5

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 3.247e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.019160211985324e-4
allele num: 9812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.004e1

DP
type: SiteQuality
SIO_000300: 7.27465e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.924318633758334e-5
allele num: 34196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.397e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 7.21152e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.716981132075472e-4
allele num: 4240
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South Asian
type: Population
allele count: 1
allele frequency: 1.0827197921178e-4
allele num: 9236
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FS
type: SiteQuality
SIO_000300: 1.788e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 6.58839e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.1654395842356e-4
allele num: 9236
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
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QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

FS
type: SiteQuality
SIO_000300: 1.788e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 6.58839e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3150
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.628710356339357e-5
allele num: 27558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.647e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 3.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

DP
type: SiteQuality
SIO_000300: 6.06722e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

Latino
type: Population
allele count: 1
allele frequency: 2.498750624687656e-4
allele num: 4002
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
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DP
type: SiteQuality
SIO_000300: 5.89733e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.663e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.92e-1

FS
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.767329716696805e-5
allele num: 26544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.663e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 5.89733e5

VQSLOD
type: SiteQuality
SIO_000300: -4.92e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

African
type: Population
allele count: 8
allele frequency: 2.967359050445104e-3
allele num: 2696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 3.906e0

DP
type: SiteQuality
SIO_000300: 5.43892e5

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.183699458771092e-4
allele num: 6282
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 4.79154e5

QD
type: SiteQuality
SIO_000300: 2.435e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 4.71721e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.295e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1960
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European (Finnish)
type: Population
allele count: 4
allele frequency: 5.141388174807198e-3
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 4.567022538552788e-3
allele num: 16860
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 4.71721e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.032348804500703e-4
allele num: 1422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.326e0

QD
type: SiteQuality
SIO_000300: 7.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.61e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 4.18217e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4754
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.098477486232588e-5
allele num: 12348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.876e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.099e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 4.13119e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.340556697179151e-5
allele num: 10706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.229e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.17e-2

FS
type: SiteQuality
SIO_000300: 1.345e0

QD
type: SiteQuality
SIO_000300: 3.66e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 3.92385e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.276e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.570694087403599e-4
allele num: 3890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.732e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.437e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.82448e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3150
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.664e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

QD
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.569999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 2.61392e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

East Asian
type: Population
allele count: 2
allele frequency: 3.436426116838488e-3
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.131e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

FS
type: SiteQuality
SIO_000300: 7.791e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 2.59827e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.582e0

DP
type: SiteQuality
SIO_000300: 2.57795e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

FS
type: SiteQuality
SIO_000300: 7.129e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.673e1

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

DP
type: SiteQuality
SIO_000300: 2.56027e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.375e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 6.99e0

QD
type: SiteQuality
SIO_000300: 2.446e1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.645e0

DP
type: SiteQuality
SIO_000300: 2.2403e5

FS
type: SiteQuality
SIO_000300: 6.854e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 4.596e1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.97785e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

QD
type: SiteQuality
SIO_000300: 1.073e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.023e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.085e-1

DP
type: SiteQuality
SIO_000300: 1.31179e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.512e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 5149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9145
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9163
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 14
allele frequency: 1.623376623376623e-3
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 2.072027e6

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 4.587e0

QD
type: SiteQuality
SIO_000300: 1.602e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9151
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
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GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
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GenotypeQuality
all individuals: 5144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.022e0

DP
type: SiteQuality
SIO_000300: 2.0745e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

QD
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 1.343e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.583e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 1695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925669170036588e-4
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 2.074545e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.144e0

FS
type: SiteQuality
SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25180
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3952
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 5143
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variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.403e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.074585e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

MQ
type: SiteQuality
SIO_000300: 6.039e1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 3508
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9149
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variant carriers: 2

GenotypeQuality
all individuals: 25263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9171
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 6.426e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.563e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e0

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 2.075449e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 5142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 9170
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 25273
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.053e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.07546e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.294e0

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.075945e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.529e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.076028e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.09e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.371e1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.607e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-2

GenotypeDepth
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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East Asian
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ClippingRankSum
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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African
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FS
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ReadPosRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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DP
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QD
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VQSLOD
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MQ
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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Other
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East Asian
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VQSLOD
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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FS
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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VQSLOD
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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East Asian
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ClippingRankSum
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VQSLOD
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DP
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MQ
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GenotypeQuality
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South Asian
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African
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allele frequency: 2.894076789504148e-4
allele num: 10366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
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FS
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SIO_000300: 4.29e0

BaseQRankSum
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SIO_000300: -1.069e0

VQSLOD
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SIO_000300: 7.74e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.747e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.072644e6

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

FS
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SIO_000300: 4.362e0

MQRankSum
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SIO_000300: 1.25e0

MQ
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QD
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SIO_000300: 1.387e1

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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ClippingRankSum
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SIO_000300: -1.368e0

VQSLOD
type: SiteQuality
SIO_000300: -3.847e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001560811622043e-5
allele num: 66632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.268e1

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

ReadPosRankSum
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SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 2.07226e6

FS
type: SiteQuality
SIO_000300: 2.462e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

GenotypeDepth
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variant carriers: 5

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2551
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 12
allele frequency: 1.159420289855072e-3
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 1.855e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.071206e6

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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QD
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VQSLOD
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SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

South Asian
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allele num: 16486
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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African
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allele num: 10332
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Other
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South Asian
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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FS
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -2.707e0

ClippingRankSum
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SIO_000300: 1.46e-1

MQ
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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FS
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SIO_000300: 1.0789e1

BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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num of homozygotes: 0

Latino
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Other
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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DP
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QD
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.24e-1

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

Other
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South Asian
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allele num: 16468
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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MQRankSum
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SIO_000300: 6.929999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
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SIO_000300: -2.916e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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African
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ReadPosRankSum
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SIO_000300: 3.68e-1

MQRankSum
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DP
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MQ
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QD
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

South Asian
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allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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Other
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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allele num: 16454
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European (Finnish)
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East Asian
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Other
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QD
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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Other
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East Asian
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allele frequency: 1.169590643274854e-4
allele num: 8550
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European (Non-Finnish)
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Latino
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9005
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744896178677369e-4
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.226e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 1.943456e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 1643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.193e1

DP
type: SiteQuality
SIO_000300: 1.940239e6

VQSLOD
type: SiteQuality
SIO_000300: -1.413e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.303e0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9000
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4614
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65862
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.57057843370626e-4
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.922873e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 1019
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5071
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 5616
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3172
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3786
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 5242
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3133
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1516
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1258
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 3197
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1184
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9013
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4097
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 555
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 943
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1800
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4887
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1480
bin: 7.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.303497718878992e-3
allele num: 9206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.610108303249097e-4
allele num: 5540
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.735589331803843e-4
allele num: 6974
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.381024720342494e-3
allele num: 14482
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 6.229235880398671e-3
allele num: 7224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 4.712877030162413e-4
allele num: 55168
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.211e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.339957e6

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.233e0

QD
type: SiteQuality
SIO_000300: 4.21e0

GenotypeQuality
all individuals: 740
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5948
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5442
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4002
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.699986400108799e-5
allele num: 58824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.348582e6

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

GenotypeQuality
all individuals: 3008
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 858
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1132
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3172
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4987
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1571
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5843
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variant carriers: 1

GenotypeQuality
all individuals: 2629
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1240
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5308
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3909
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 16628
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 547
bin: 5.75e1
variant carriers: 2

African
type: Population
allele count: 31
allele frequency: 3.75484496124031e-3
allele num: 8256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.216333622936577e-4
allele num: 57550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.271971743195513e-4
allele num: 9626
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.982969664715274e-4
allele num: 15032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.158580537843083e-4
allele num: 7214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.558e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.356e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 3.12e0

DP
type: SiteQuality
SIO_000300: 1.39356e6

FS
type: SiteQuality
SIO_000300: 2.261e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: -5.214e-1

GenotypeQuality
all individuals: 275
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 2.75e1
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GenotypeQuality
all individuals: 4040
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variant carriers: 1

GenotypeQuality
all individuals: 27041
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variant carriers: 0

GenotypeQuality
all individuals: 510
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GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 5812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5048
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.063603488619443e-4
allele num: 9402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60026
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 2.299e0

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

DP
type: SiteQuality
SIO_000300: 1.485492e6

VQSLOD
type: SiteQuality
SIO_000300: -2.811e0

MQ
type: SiteQuality
SIO_000300: 5.75e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

GenotypeQuality
all individuals: 2279
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
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GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 1749
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GenotypeQuality
all individuals: 693
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variant carriers: 0

GenotypeQuality
all individuals: 2005
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GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
all individuals: 515
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GenotypeQuality
all individuals: 880
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variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28326
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variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 3.25e1
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GenotypeQuality
all individuals: 841
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4052
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0