17-56432355-TAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432355
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432353
    reference: chr 17
allele count: 4
allele frequency: 3.323197580712161e-5
allele num: 120366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-10_2186-9delCT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-10_2309-9delCT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-10_2309-9delCT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17320_434+17321delAG
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-10_1928-9delCT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-10_2309-9delCT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-10_2186-9delCT
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10068
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: TAG
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-56432362-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432362
    reference: chr 17
allele count: 19449
allele frequency: 1.621993528371752e-1
allele num: 119908
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-15G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17322C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-15G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-15G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-15G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-15G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-15G>C
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 2.25e1
  variant carriers: 1598
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 5.25e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.75e1
  variant carriers: 2329
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 4.75e1
  variant carriers: 1338
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 1.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 1909
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.75e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 5.75e1
  variant carriers: 691
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 3.25e1
  variant carriers: 2520
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.75e1
  variant carriers: 958
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.75e1
  variant carriers: 800
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 16661
  bin: 2.75e1
  variant carriers: 2366
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 18303
  bin: 6.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.75e1
  variant carriers: 72
num of homozygotes: 1654
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

17-56432362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432362
    reference: chr 17
allele count: 4
allele frequency: 3.3358908496514e-5
allele num: 119908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-15G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17322C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-15G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-15G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-15G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-15G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-15G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-56432363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432363
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432363
    reference: chr 17
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-16C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17323G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-16C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-16C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-16C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-16C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-16C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20886
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

17-56432376-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432376
    reference: chr 17
allele count: 782
allele frequency: 6.579943792807499e-3
allele num: 118846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-29C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-29C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-29C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-29C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-29C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17336G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-29C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 16583
  bin: 2.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 3.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 2.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18604
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10286
  bin: 9.75e1
  variant carriers: 722
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 30
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

17-56432380-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432380
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432380
    reference: chr 17
allele count: 3
allele frequency: 2.525252525252525e-5
allele num: 118800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17340T>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-33A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-33A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-33A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-33A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-33A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-33A>G
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

17-56432393-C-CTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432393
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432396
    reference: chr 17
allele count: 1
allele frequency: 8.499643014993371e-6
allele num: 117652
alternate allele: CTGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-47_2186-46insACA
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-47_1928-46insACA
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17353_434+17354insTGT
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-47_2309-46insACA
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-47_2309-46insACA
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-47_2186-46insACA
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-47_2309-46insACA
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4850
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-56432394-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432394
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432394
    reference: chr 17
allele count: 1
allele frequency: 8.493578854386084e-6
allele num: 117736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-47T>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-47T>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-47T>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17354A>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-47T>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-47T>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-47T>C
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-56432395-G-GAAAGAGATGACGTTGTTACCCTGAGTGACAGTCACGACAGAACAAAACCACAAGACCAGACCACATTTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432395
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432465
    reference: chr 17
allele count: 1
allele frequency: 8.50152177239726e-6
allele num: 117626
alternate allele: GAAAGAGATGACGTTGTTACCCTGAGTGACAGTCACGACAGAACAAAACCACAAGACCAGACCACATTTGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9664
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

17-56432397-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56432397
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56432397
    reference: chr 17
allele count: 35
allele frequency: 2.981819421015863e-4
allele num: 117378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2309-50C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+17357G>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1928-50C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2186-50C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2186-50C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2309-50C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2309-50C>A
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8305
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

17-56434481-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434481
    reference: chr 17
allele count: 666
allele frequency: 9.346056693797362e-2
allele num: 7126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+348G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+348G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+348G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+348G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.*46G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19441C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+348G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+348G>C
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.5e0
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 1.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 2.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 1.75e1
  variant carriers: 23
num of homozygotes: 44
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-56434497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434497
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434497
    reference: chr 17
allele count: 1
allele frequency: 1.320306311064167e-4
allele num: 7574
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+332G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+332G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+332G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+332G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+332G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19457C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+332G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-56434544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434544
    reference: chr 17
allele count: 1
allele frequency: 8.591065292096221e-5
allele num: 11640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+285G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+285G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2212G>A
  hgvsp: ENSP00000462447.1:p.Asp738Asn
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19504C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+285G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+285G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+285G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+285G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6967
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4473
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp738Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-56434550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434550
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434550
    reference: chr 17
allele count: 5
allele frequency: 4.192520543350662e-4
allele num: 11926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+279G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+279G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2206G>A
  hgvsp: ENSP00000462447.1:p.Gly736Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+279G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+279G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+279G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+279G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19510C>T
  variant of: http://identifiers.org/hgnc/44148
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly736Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-56434551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434551
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434551
    reference: chr 17
allele count: 5
allele frequency: 4.172229639519359e-4
allele num: 11984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+278C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+278C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19511G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2205C>T
  hgvsp: ENST00000581868.1:c.2205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+278C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+278C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+278C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+278C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala735Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-56434553-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434553
    reference: chr 17
allele count: 1
allele frequency: 8.26856292376385e-5
allele num: 12094
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+276G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+276G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+276G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+276G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2203G>C
  hgvsp: ENSP00000462447.1:p.Ala735Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+276G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+276G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19513C>G
  variant of: http://identifiers.org/hgnc/44148
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala735Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-56434596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434596
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434596
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 12800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2160G>A
  hgvsp: ENST00000581868.1:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+233G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+233G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+233G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19556C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+233G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+233G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+233G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19567
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17409
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Arg720Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

17-56434597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434597
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434597
    reference: chr 17
allele count: 15
allele frequency: 1.172241325414192e-3
allele num: 12796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+232G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+232G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+232G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+232G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19557C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2159G>A
  hgvsp: ENSP00000462447.1:p.Arg720Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+232G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+232G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg720Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-56434610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434610
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434610
    reference: chr 17
allele count: 1
allele frequency: 7.70891150169596e-5
allele num: 12972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+219C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+219C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19570G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+219C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+219C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+219C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2146C>T
  hgvsp: ENSP00000462447.1:p.Gln716Ter
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+219C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln716Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-56434657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434657
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434657
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 14620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+172G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+172G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2099G>A
  hgvsp: ENSP00000462447.1:p.Arg700Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19617C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+172G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+172G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+172G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+172G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9036
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg700Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

17-56434660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434660
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434660
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 14838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+169G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+169G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+169G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+169G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+169G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2096G>A
  hgvsp: ENSP00000462447.1:p.Cys699Tyr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19620C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+169G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Cys699Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

17-56434677-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434677
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434678
    reference: chr 17
allele count: 1
allele frequency: 5.702554744525547e-5
allele num: 17536
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+151dupT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+151dupT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+151dupT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2078dupT
  hgvsp: ENSP00000462447.1:p.Ser694IlefsTer45
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19638dupA
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+151dupT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+151dupT
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+151dupT
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser694IlefsTer45
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-56434679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434679
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434679
    reference: chr 17
allele count: 53
allele frequency: 2.941829484902309e-3
allele num: 18016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+150G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+150G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+150G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+150G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2077G>A
  hgvsp: ENSP00000462447.1:p.Val693Ile
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+150G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19639C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+150G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25913
  bin: 7.5e0
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23907
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val693Ile
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

17-56434680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434680
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434680
    reference: chr 17
allele count: 3
allele frequency: 1.610305958132045e-4
allele num: 18630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+149C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+149C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+149C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+149C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2076C>T
  hgvsp: ENST00000581868.1:c.2076C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19640G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+149C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+149C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser692Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-56434687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434687
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434687
    reference: chr 17
allele count: 4
allele frequency: 1.850652354955122e-4
allele num: 21614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2069G>A
  hgvsp: ENSP00000462447.1:p.Arg690Gln
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+142G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+142G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+142G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+142G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+142G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19647C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+142G>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15826
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32923
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6970
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30713
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Arg690Gln
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

17-56434688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434688
    reference: chr 17
allele count: 5
allele frequency: 2.22182723071454e-4
allele num: 22504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+141C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+141C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19648G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+141C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+141C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+141C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2068C>T
  hgvsp: ENSP00000462447.1:p.Arg690Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+141C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33827
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Arg690Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

17-56434691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434691
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434691
    reference: chr 17
allele count: 1
allele frequency: 3.967939052456155e-5
allele num: 25202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+138C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+138C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2065C>T
  hgvsp: ENSP00000462447.1:p.His689Tyr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+138C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+138C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19651G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+138C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+138C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His689Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

17-56434692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434692
    reference: chr 17
allele count: 1
allele frequency: 3.847337642351493e-5
allele num: 25992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19652G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+137C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+137C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+137C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2064C>T
  hgvsp: ENST00000581868.1:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+137C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+137C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+137C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10685
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn688Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-56434692-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434692
    reference: chr 17
allele count: 1
allele frequency: 3.847337642351493e-5
allele num: 25992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+137C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19652G>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+137C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+137C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2064C>A
  hgvsp: ENSP00000462447.1:p.Asn688Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+137C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+137C>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+137C>A
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36084
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn688Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-56434697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434697
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434697
    reference: chr 17
allele count: 1
allele frequency: 3.322259136212625e-5
allele num: 30100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+132C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+132C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+132C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+132C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+132C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19657G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2059C>T
  hgvsp: ENSP00000462447.1:p.Leu687Phe
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+132C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu687Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-56434720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434720
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434720
    reference: chr 17
allele count: 3
allele frequency: 4.802458858935775e-5
allele num: 62468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19680G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+109C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+109C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+109C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+109C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2036C>T
  hgvsp: ENSP00000462447.1:p.Thr679Ile
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+109C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+109C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr679Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-56434724-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434724
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434724
    reference: chr 17
allele count: 1
allele frequency: 1.44487790781679e-5
allele num: 69210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19684C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+105G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+105G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+105G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+105G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2032G>C
  hgvsp: ENSP00000462447.1:p.Asp678His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+105G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+105G>C
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp678His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

17-56434725-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434725
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434725
    reference: chr 17
allele count: 2
allele frequency: 2.828294255734367e-5
allele num: 70714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2031G>C
  hgvsp: ENSP00000462447.1:p.Lys677Asn
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+104G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+104G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+104G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+104G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+104G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19685C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+104G>C
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys677Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-56434734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434734
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434734
    reference: chr 17
allele count: 2
allele frequency: 2.30701794859964e-5
allele num: 86692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+95A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19694T>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2022A>G
  hgvsp: ENST00000581868.1:c.2022A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+95A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+95A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+95A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+95A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+95A>G
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33045
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu674Glu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-56434744-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434744
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434744
    reference: chr 17
allele count: 3
allele frequency: 2.981988787722158e-5
allele num: 100604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2012G>C
  hgvsp: ENSP00000462447.1:p.Gly671Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+85G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+85G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+85G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+85G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19704C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+85G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+85G>C
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39158
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly671Ala
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-56434747-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434747
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434747
    reference: chr 17
allele count: 1
allele frequency: 9.655492043874556e-6
allele num: 103568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+82A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+82A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19707T>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+82A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+82A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+82A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2009A>G
  hgvsp: ENSP00000462447.1:p.Lys670Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+82A>G
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9046
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys670Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-56434754-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434754
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434754
    reference: chr 17
allele count: 1
allele frequency: 9.137593888777207e-6
allele num: 109438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19714C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+75G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+75G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.2002G>C
  hgvsp: ENSP00000462447.1:p.Ala668Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+75G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+75G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+75G>C
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+75G>C
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala668Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-56434784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434784
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434784
    reference: chr 17
allele count: 1
allele frequency: 8.325562808045825e-6
allele num: 120112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19744G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+45C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1972C>T
  hgvsp: ENSP00000462447.1:p.Gln658Ter
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+45C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+45C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+45C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+45C>T
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+45C>T
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln658Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

17-56434787-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434787
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434787
    reference: chr 17
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19747G>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+42C>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+42C>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+42C>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1969C>G
  hgvsp: ENSP00000462447.1:p.Leu657Val
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+42C>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+42C>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+42C>G
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu657Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-56434788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434788
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434788
    reference: chr 17
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1968A>G
  hgvsp: ENST00000581868.1:c.1968A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19748T>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+41A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+41A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+41A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+41A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+41A>G
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+41A>G
  variant of: http://identifiers.org/hgnc/18505
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg656Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-56434792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434792
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434792
    reference: chr 17
allele count: 2
allele frequency: 1.657852417977751e-5
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2185+37G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2185+37G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2308+37G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1927+37G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2308+37G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2308+37G>A
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1964G>A
  hgvsp: ENSP00000462447.1:p.Arg655Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19752C>T
  variant of: http://identifiers.org/hgnc/44148
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg655Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-56434832-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434832
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434832
    reference: chr 17
allele count: 3
allele frequency: 2.474430880897394e-5
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2305C>G
  hgvsp: ENSP00000463069.1:p.Pro769Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2182C>G
  hgvsp: ENSP00000462502.1:p.Pro728Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1924C>G
  hgvsp: ENSP00000463716.1:p.Pro642Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2182C>G
  hgvsp: ENSP00000441969.1:p.Pro728Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1924C>G
  hgvsp: ENSP00000462447.1:p.Pro642Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2305C>G
  hgvsp: ENSP00000385328.2:p.Pro769Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2305C>G
  hgvsp: ENSP00000462764.1:p.Pro769Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19792G>C
  variant of: http://identifiers.org/hgnc/44148
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro769Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

17-56434840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434840
    reference: chr 17
allele count: 4
allele frequency: 3.298207424264912e-5
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19800G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2297C>T
  hgvsp: ENSP00000463069.1:p.Ser766Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2297C>T
  hgvsp: ENSP00000385328.2:p.Ser766Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1916C>T
  hgvsp: ENSP00000463716.1:p.Ser639Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1916C>T
  hgvsp: ENSP00000462447.1:p.Ser639Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2174C>T
  hgvsp: ENSP00000462502.1:p.Ser725Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2297C>T
  hgvsp: ENSP00000462764.1:p.Ser766Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2174C>T
  hgvsp: ENSP00000441969.1:p.Ser725Leu
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser766Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-56434843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434843
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434843
    reference: chr 17
allele count: 3
allele frequency: 2.473370049137618e-5
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19803A>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1913T>C
  hgvsp: ENSP00000462447.1:p.Leu638Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2294T>C
  hgvsp: ENSP00000462764.1:p.Leu765Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2294T>C
  hgvsp: ENSP00000385328.2:p.Leu765Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2171T>C
  hgvsp: ENSP00000441969.1:p.Leu724Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2294T>C
  hgvsp: ENSP00000463069.1:p.Leu765Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2171T>C
  hgvsp: ENSP00000462502.1:p.Leu724Pro
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1913T>C
  hgvsp: ENSP00000463716.1:p.Leu638Pro
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu765Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

17-56434851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434851
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434851
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2163C>T
  hgvsp: ENST00000500597.2:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19811G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2286C>T
  hgvsp: ENST00000407977.2:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1905C>T
  hgvsp: ENST00000581868.1:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1905C>T
  hgvsp: ENST00000577625.1:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2286C>T
  hgvsp: ENST00000584437.1:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2163C>T
  hgvsp: ENST00000583753.1:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2286C>T
  hgvsp: ENST00000577716.1:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys762Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

17-56434851-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434851
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434851
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2286C>G
  hgvsp: ENSP00000385328.2:p.Cys762Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2163C>G
  hgvsp: ENSP00000462502.1:p.Cys721Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19811G>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2163C>G
  hgvsp: ENSP00000441969.1:p.Cys721Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1905C>G
  hgvsp: ENSP00000463716.1:p.Cys635Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2286C>G
  hgvsp: ENSP00000463069.1:p.Cys762Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1905C>G
  hgvsp: ENSP00000462447.1:p.Cys635Trp
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2286C>G
  hgvsp: ENSP00000462764.1:p.Cys762Trp
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys762Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-56434853-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434853
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434853
    reference: chr 17
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2284T>C
  hgvsp: ENSP00000462764.1:p.Cys762Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2161T>C
  hgvsp: ENSP00000462502.1:p.Cys721Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2284T>C
  hgvsp: ENSP00000385328.2:p.Cys762Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2161T>C
  hgvsp: ENSP00000441969.1:p.Cys721Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1903T>C
  hgvsp: ENSP00000463716.1:p.Cys635Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2284T>C
  hgvsp: ENSP00000463069.1:p.Cys762Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1903T>C
  hgvsp: ENSP00000462447.1:p.Cys635Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19813A>G
  variant of: http://identifiers.org/hgnc/44148
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys762Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

17-56434854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434854
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434854
    reference: chr 17
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2283C>T
  hgvsp: ENST00000584437.1:c.2283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1902C>T
  hgvsp: ENST00000581868.1:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19814G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2283C>T
  hgvsp: ENST00000577716.1:c.2283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2283C>T
  hgvsp: ENST00000407977.2:c.2283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1902C>T
  hgvsp: ENST00000577625.1:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2160C>T
  hgvsp: ENST00000583753.1:c.2160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2160C>T
  hgvsp: ENST00000500597.2:c.2160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His761His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-56434857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434857
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434857
    reference: chr 17
allele count: 1527
allele frequency: 1.258509568628744e-2
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2280G>A
  hgvsp: ENST00000407977.2:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2157G>A
  hgvsp: ENST00000583753.1:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2157G>A
  hgvsp: ENST00000500597.2:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2280G>A
  hgvsp: ENST00000577716.1:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1899G>A
  hgvsp: ENST00000581868.1:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2280G>A
  hgvsp: ENST00000584437.1:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19817C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1899G>A
  hgvsp: ENST00000577625.1:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 43571
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 714
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 9.75e1
  variant carriers: 1504
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro760Pro
num of homozygotes: 22
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-56434858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434858
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434858
    reference: chr 17
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19818G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2279C>T
  hgvsp: ENSP00000385328.2:p.Pro760Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2156C>T
  hgvsp: ENSP00000441969.1:p.Pro719Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2279C>T
  hgvsp: ENSP00000463069.1:p.Pro760Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2279C>T
  hgvsp: ENSP00000462764.1:p.Pro760Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2156C>T
  hgvsp: ENSP00000462502.1:p.Pro719Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1898C>T
  hgvsp: ENSP00000463716.1:p.Pro633Leu
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1898C>T
  hgvsp: ENSP00000462447.1:p.Pro633Leu
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro760Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

17-56434864-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434864
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434864
    reference: chr 17
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2273C>G
  hgvsp: ENSP00000462764.1:p.Pro758Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2150C>G
  hgvsp: ENSP00000441969.1:p.Pro717Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1892C>G
  hgvsp: ENSP00000462447.1:p.Pro631Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2273C>G
  hgvsp: ENSP00000463069.1:p.Pro758Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1892C>G
  hgvsp: ENSP00000463716.1:p.Pro631Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2150C>G
  hgvsp: ENSP00000462502.1:p.Pro717Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19824G>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2273C>G
  hgvsp: ENSP00000385328.2:p.Pro758Arg
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro758Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

17-56434869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434869
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434869
    reference: chr 17
allele count: 10
allele frequency: 8.239675686364985e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2145A>G
  hgvsp: ENST00000500597.2:c.2145A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1887A>G
  hgvsp: ENST00000581868.1:c.1887A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2268A>G
  hgvsp: ENST00000584437.1:c.2268A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19829T>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1887A>G
  hgvsp: ENST00000577625.1:c.1887A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2268A>G
  hgvsp: ENST00000407977.2:c.2268A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2268A>G
  hgvsp: ENST00000577716.1:c.2268A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2145A>G
  hgvsp: ENST00000583753.1:c.2145A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro756Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-56434870-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434870
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434870
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2267C>G
  hgvsp: ENSP00000385328.2:p.Pro756Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1886C>G
  hgvsp: ENSP00000463716.1:p.Pro629Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2267C>G
  hgvsp: ENSP00000462764.1:p.Pro756Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1886C>G
  hgvsp: ENSP00000462447.1:p.Pro629Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19830G>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2144C>G
  hgvsp: ENSP00000462502.1:p.Pro715Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2144C>G
  hgvsp: ENSP00000441969.1:p.Pro715Arg
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2267C>G
  hgvsp: ENSP00000463069.1:p.Pro756Arg
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro756Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-56434875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434875
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434875
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2139C>T
  hgvsp: ENST00000583753.1:c.2139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2262C>T
  hgvsp: ENST00000407977.2:c.2262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1881C>T
  hgvsp: ENST00000581868.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19835G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2262C>T
  hgvsp: ENST00000584437.1:c.2262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2262C>T
  hgvsp: ENST00000577716.1:c.2262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1881C>T
  hgvsp: ENST00000577625.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2139C>T
  hgvsp: ENST00000500597.2:c.2139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly754Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-56434876-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434876
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434876
    reference: chr 17
allele count: 288
allele frequency: 2.372831084087201e-3
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2261G>C
  hgvsp: ENSP00000462764.1:p.Gly754Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2138G>C
  hgvsp: ENSP00000441969.1:p.Gly713Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19836C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2138G>C
  hgvsp: ENSP00000462502.1:p.Gly713Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1880G>C
  hgvsp: ENSP00000462447.1:p.Gly627Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1880G>C
  hgvsp: ENSP00000463716.1:p.Gly627Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2261G>C
  hgvsp: ENSP00000385328.2:p.Gly754Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2261G>C
  hgvsp: ENSP00000463069.1:p.Gly754Ala
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11800
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 43556
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly754Ala
num of homozygotes: 4
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

17-56434878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434878
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434878
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2259G>A
  hgvsp: ENST00000584437.1:c.2259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2136G>A
  hgvsp: ENST00000500597.2:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2259G>A
  hgvsp: ENST00000407977.2:c.2259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1878G>A
  hgvsp: ENST00000577625.1:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1878G>A
  hgvsp: ENST00000581868.1:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2259G>A
  hgvsp: ENST00000577716.1:c.2259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19838C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2136G>A
  hgvsp: ENST00000583753.1:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48075
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu753Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

17-56434880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434880
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434880
    reference: chr 17
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2257G>A
  hgvsp: ENSP00000385328.2:p.Glu753Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19840C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2134G>A
  hgvsp: ENSP00000462502.1:p.Glu712Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2134G>A
  hgvsp: ENSP00000441969.1:p.Glu712Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2257G>A
  hgvsp: ENSP00000462764.1:p.Glu753Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2257G>A
  hgvsp: ENSP00000463069.1:p.Glu753Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1876G>A
  hgvsp: ENSP00000462447.1:p.Glu626Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1876G>A
  hgvsp: ENSP00000463716.1:p.Glu626Lys
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu753Lys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-56434883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434883
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434883
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2131G>A
  hgvsp: ENSP00000462502.1:p.Ala711Thr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2254G>A
  hgvsp: ENSP00000385328.2:p.Ala752Thr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2131G>A
  hgvsp: ENSP00000441969.1:p.Ala711Thr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19843C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1873G>A
  hgvsp: ENSP00000463716.1:p.Ala625Thr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2254G>A
  hgvsp: ENSP00000463069.1:p.Ala752Thr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1873G>A
  hgvsp: ENSP00000462447.1:p.Ala625Thr
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2254G>A
  hgvsp: ENSP00000462764.1:p.Ala752Thr
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala752Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

17-56434884-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434884
    reference: chr 17
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1872C>G
  hgvsp: ENST00000577625.1:c.1872C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2130C>G
  hgvsp: ENST00000583753.1:c.2130C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2253C>G
  hgvsp: ENST00000407977.2:c.2253C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2253C>G
  hgvsp: ENST00000584437.1:c.2253C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19844G>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2130C>G
  hgvsp: ENST00000500597.2:c.2130C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2253C>G
  hgvsp: ENST00000577716.1:c.2253C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1872C>G
  hgvsp: ENST00000581868.1:c.1872C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr751Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

17-56434889-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434889
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434889
    reference: chr 17
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2248G>C
  hgvsp: ENSP00000463069.1:p.Asp750His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2248G>C
  hgvsp: ENSP00000462764.1:p.Asp750His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2125G>C
  hgvsp: ENSP00000441969.1:p.Asp709His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1867G>C
  hgvsp: ENSP00000463716.1:p.Asp623His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19849C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2248G>C
  hgvsp: ENSP00000385328.2:p.Asp750His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1867G>C
  hgvsp: ENSP00000462447.1:p.Asp623His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2125G>C
  hgvsp: ENSP00000462502.1:p.Asp709His
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp750His
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-56434902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434902
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434902
    reference: chr 17
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2112T>C
  hgvsp: ENST00000583753.1:c.2112T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1854T>C
  hgvsp: ENST00000577625.1:c.1854T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1854T>C
  hgvsp: ENST00000581868.1:c.1854T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2235T>C
  hgvsp: ENST00000407977.2:c.2235T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2235T>C
  hgvsp: ENST00000584437.1:c.2235T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19862A>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2235T>C
  hgvsp: ENST00000577716.1:c.2235T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2112T>C
  hgvsp: ENST00000500597.2:c.2112T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser745Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

17-56434911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434911
    reference: chr 17
allele count: 6
allele frequency: 4.942827956634923e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1845G>A
  hgvsp: ENST00000581868.1:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2103G>A
  hgvsp: ENST00000500597.2:c.2103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19871C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2226G>A
  hgvsp: ENST00000577716.1:c.2226G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2103G>A
  hgvsp: ENST00000583753.1:c.2103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1845G>A
  hgvsp: ENST00000577625.1:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2226G>A
  hgvsp: ENST00000407977.2:c.2226G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2226G>A
  hgvsp: ENST00000584437.1:c.2226G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu742Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-56434913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434913
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434913
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2224G>A
  hgvsp: ENSP00000462764.1:p.Glu742Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19873C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2224G>A
  hgvsp: ENSP00000385328.2:p.Glu742Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2101G>A
  hgvsp: ENSP00000462502.1:p.Glu701Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1843G>A
  hgvsp: ENSP00000463716.1:p.Glu615Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2101G>A
  hgvsp: ENSP00000441969.1:p.Glu701Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1843G>A
  hgvsp: ENSP00000462447.1:p.Glu615Lys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2224G>A
  hgvsp: ENSP00000463069.1:p.Glu742Lys
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu742Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

17-56434937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434937
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434937
    reference: chr 17
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2200C>T
  hgvsp: ENSP00000385328.2:p.Pro734Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2077C>T
  hgvsp: ENSP00000441969.1:p.Pro693Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19897G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2077C>T
  hgvsp: ENSP00000462502.1:p.Pro693Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1819C>T
  hgvsp: ENSP00000463716.1:p.Pro607Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2200C>T
  hgvsp: ENSP00000462764.1:p.Pro734Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2200C>T
  hgvsp: ENSP00000463069.1:p.Pro734Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1819C>T
  hgvsp: ENSP00000462447.1:p.Pro607Ser
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48028
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro734Ser
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-56434942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434942
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434942
    reference: chr 17
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2195G>A
  hgvsp: ENSP00000463069.1:p.Arg732His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1814G>A
  hgvsp: ENSP00000463716.1:p.Arg605His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19902C>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2072G>A
  hgvsp: ENSP00000462502.1:p.Arg691His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1814G>A
  hgvsp: ENSP00000462447.1:p.Arg605His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2072G>A
  hgvsp: ENSP00000441969.1:p.Arg691His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2195G>A
  hgvsp: ENSP00000462764.1:p.Arg732His
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2195G>A
  hgvsp: ENSP00000385328.2:p.Arg732His
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg732His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-56434943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434943
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434943
    reference: chr 17
allele count: 8
allele frequency: 6.590545861961017e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19903G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2194C>T
  hgvsp: ENSP00000463069.1:p.Arg732Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2194C>T
  hgvsp: ENSP00000385328.2:p.Arg732Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2194C>T
  hgvsp: ENSP00000462764.1:p.Arg732Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2071C>T
  hgvsp: ENSP00000462502.1:p.Arg691Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1813C>T
  hgvsp: ENSP00000462447.1:p.Arg605Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2071C>T
  hgvsp: ENSP00000441969.1:p.Arg691Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1813C>T
  hgvsp: ENSP00000463716.1:p.Arg605Cys
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg732Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-56434981-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434981
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434981
    reference: chr 17
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2156A>G
  hgvsp: ENSP00000385328.2:p.Tyr719Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2033A>G
  hgvsp: ENSP00000462502.1:p.Tyr678Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2156A>G
  hgvsp: ENSP00000462764.1:p.Tyr719Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19941T>C
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2033A>G
  hgvsp: ENSP00000441969.1:p.Tyr678Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1775A>G
  hgvsp: ENSP00000463716.1:p.Tyr592Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1775A>G
  hgvsp: ENSP00000462447.1:p.Tyr592Cys
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2156A>G
  hgvsp: ENSP00000463069.1:p.Tyr719Cys
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr719Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

17-56434988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434988
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434988
    reference: chr 17
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2149C>T
  hgvsp: ENSP00000385328.2:p.Pro717Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2149C>T
  hgvsp: ENSP00000462764.1:p.Pro717Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2026C>T
  hgvsp: ENSP00000462502.1:p.Pro676Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19948G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1768C>T
  hgvsp: ENSP00000462447.1:p.Pro590Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1768C>T
  hgvsp: ENSP00000463716.1:p.Pro590Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2149C>T
  hgvsp: ENSP00000463069.1:p.Pro717Ser
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2026C>T
  hgvsp: ENSP00000441969.1:p.Pro676Ser
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro717Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

17-56434989-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434989
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434989
    reference: chr 17
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2148C>T
  hgvsp: ENST00000577716.1:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2025C>T
  hgvsp: ENST00000583753.1:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2025C>T
  hgvsp: ENST00000500597.2:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2148C>T
  hgvsp: ENST00000407977.2:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19949G>A
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1767C>T
  hgvsp: ENST00000577625.1:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1767C>T
  hgvsp: ENST00000581868.1:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2148C>T
  hgvsp: ENST00000584437.1:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly716Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

17-56434989-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434989
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434989
    reference: chr 17
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1767C>A
  hgvsp: ENST00000581868.1:c.1767C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19949G>T
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1767C>A
  hgvsp: ENST00000577625.1:c.1767C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2148C>A
  hgvsp: ENST00000584437.1:c.2148C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2025C>A
  hgvsp: ENST00000583753.1:c.2025C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2025C>A
  hgvsp: ENST00000500597.2:c.2025C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2148C>A
  hgvsp: ENST00000407977.2:c.2148C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2148C>A
  hgvsp: ENST00000577716.1:c.2148C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly716Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

17-56434990-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56434990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56434990
    reference: chr 17
allele count: 2
allele frequency: 1.651173158529135e-5
allele num: 121126
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463069
  ensembl transcript: ENST00000584437
  gene symbol: RNF43
  hgvsc: ENST00000584437.1:c.2147G>C
  hgvsp: ENSP00000463069.1:p.Gly716Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462502
  ensembl transcript: ENST00000583753
  gene symbol: RNF43
  hgvsc: ENST00000583753.1:c.2024G>C
  hgvsp: ENSP00000462502.1:p.Gly675Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000441969
  ensembl transcript: ENST00000500597
  gene symbol: RNF43
  hgvsc: ENST00000500597.2:c.2024G>C
  hgvsp: ENSP00000441969.1:p.Gly675Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000463716
  ensembl transcript: ENST00000577625
  gene symbol: RNF43
  hgvsc: ENST00000577625.1:c.1766G>C
  hgvsp: ENSP00000463716.1:p.Gly589Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462764
  ensembl transcript: ENST00000577716
  gene symbol: RNF43
  hgvsc: ENST00000577716.1:c.2147G>C
  hgvsp: ENSP00000462764.1:p.Gly716Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000462447
  ensembl transcript: ENST00000581868
  gene symbol: RNF43
  hgvsc: ENST00000581868.1:c.1766G>C
  hgvsp: ENSP00000462447.1:p.Gly589Ala
  variant of: http://identifiers.org/hgnc/18505
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265148
  ensembl transcript: ENST00000583841
  gene symbol: BZRAP1-AS1
  hgvsc: ENST00000583841.1:n.434+19950C>G
  variant of: http://identifiers.org/hgnc/44148
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108375
  ensembl protein: ENSP00000385328
  ensembl transcript: ENST00000407977
  gene symbol: RNF43
  hgvsc: ENST00000407977.2:c.2147G>C
  hgvsp: ENSP00000385328.2:p.Gly716Ala
  variant of: http://identifiers.org/hgnc/18505
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly716Ala
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 554
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13995
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013228071232712e-5
allele num: 66374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.956181533646322e-4
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.068e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 2.054913e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.996e1

QD
type: SiteQuality
SIO_000300: 1.713e1

GenotypeQuality
all individuals: 5259
bin: 6.75e1
variant carriers: 95

GenotypeQuality
all individuals: 1422
bin: 2.25e1
variant carriers: 29

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 25

GenotypeQuality
all individuals: 24446
bin: 9.75e1
variant carriers: 16863

GenotypeQuality
all individuals: 1820
bin: 7.25e1
variant carriers: 58

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1077
bin: 9.25e1
variant carriers: 103

GenotypeQuality
all individuals: 586
bin: 3.75e1
variant carriers: 43

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 46

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 99

South Asian
type: Population
allele count: 1983
allele frequency: 1.224376389231909e-1
allele num: 16196
num of homozygotes: 148

European (Non-Finnish)
type: Population
allele count: 10892
allele frequency: 1.647856213501165e-1
allele num: 66098
num of homozygotes: 923

European (Finnish)
type: Population
allele count: 1383
allele frequency: 2.115973072215422e-1
allele num: 6536
num of homozygotes: 145

African
type: Population
allele count: 1619
allele frequency: 1.589124460149195e-1
allele num: 10188
num of homozygotes: 132

Latino
type: Population
allele count: 1814
allele frequency: 1.58927632731733e-1
allele num: 11414
num of homozygotes: 140

East Asian
type: Population
allele count: 1633
allele frequency: 1.9014904517932e-1
allele num: 8588
num of homozygotes: 156

Other
type: Population
allele count: 125
allele frequency: 1.407657657657658e-1
allele num: 888
num of homozygotes: 10

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.456e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 2.154264e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 2.113e0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24446
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.051620321341039e-5
allele num: 66098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.456e1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 2.113e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.154264e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9783
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.778089887640449e-5
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 1.886714e6

FS
type: SiteQuality
SIO_000300: 5.802e0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.857e0

QD
type: SiteQuality
SIO_000300: 1.48e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 1294
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5304
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1464
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1267
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2773
bin: 7.75e1
variant carriers: 4

Other
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Latino
type: Population
allele count: 43
allele frequency: 3.797244789826916e-3
allele num: 11324
num of homozygotes: 0

African
type: Population
allele count: 719
allele frequency: 7.125867195242815e-2
allele num: 10090
num of homozygotes: 30

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.135643896634835e-4
allele num: 65554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.876407305479109e-4
allele num: 15988
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.536e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 1.789558e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.34e-2

FS
type: SiteQuality
SIO_000300: 3.795e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5297
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9674
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 941
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.989238740534077e-4
allele num: 10036
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.41e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.777799e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9663
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 414
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538603563405853e-5
allele num: 64994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.3398e1

VQSLOD
type: SiteQuality
SIO_000300: -1.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 1.68752e6

QD
type: SiteQuality
SIO_000300: 3.085e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

GenotypeQuality
all individuals: 10893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4807
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9662
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537846399901578e-5
allele num: 65026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.354e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

DP
type: SiteQuality
SIO_000300: 1.686746e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5014
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539456264047538e-5
allele num: 64958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 1.9454e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.684485e6

GenotypeQuality
all individuals: 234
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1795
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9683
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4260
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.536782538399353e-3
allele num: 9896
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.391e1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

DP
type: SiteQuality
SIO_000300: 1.679791e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 39
bin: 7.25e1
variant carriers: 31

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 17

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 43

GenotypeQuality
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bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 2479
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 829
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 565
bin: 9.75e1
variant carriers: 564

GenotypeQuality
all individuals: 208
bin: 6.25e1
variant carriers: 17

GenotypeQuality
all individuals: 51
bin: 6.75e1
variant carriers: 21

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 39

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.139534883720931e-2
allele num: 86
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.377049180327869e-2
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 254
allele frequency: 6.213307240704501e-2
allele num: 4088
num of homozygotes: 10

African
type: Population
allele count: 60
allele frequency: 1.376146788990826e-1
allele num: 436
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 336
allele frequency: 1.508078994614004e-1
allele num: 2228
num of homozygotes: 27

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.1557e4

GenotypeQuality
all individuals: 665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 600
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.277904328018223e-4
allele num: 4390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.11e0

VQSLOD
type: SiteQuality
SIO_000300: -2.043e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

DP
type: SiteQuality
SIO_000300: 8.9093e4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.965599051008304e-4
allele num: 3372
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.635e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 1.5564e5

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7889
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variant carriers: 1

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 4718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.623188405797101e-3
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.695652173913044e-4
allele num: 3450
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.588e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.62437e5

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

FS
type: SiteQuality
SIO_000300: 1.026e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.469999999999999e-2

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 1084
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GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.370569280343716e-4
allele num: 7448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.886836027713626e-4
allele num: 3464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.32e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.77e-2

DP
type: SiteQuality
SIO_000300: 1.63809e5

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 8718
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GenotypeQuality
all individuals: 4900
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.335470085470086e-4
allele num: 7488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.759999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.333e0

QD
type: SiteQuality
SIO_000300: 1.104e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.66191e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.614e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.74e0

GenotypeQuality
all individuals: 215
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2130
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GenotypeQuality
all individuals: 128
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GenotypeQuality
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GenotypeQuality
all individuals: 45
bin: 3.25e1
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 9.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.119999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.00088e5

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 89
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.968503937007874e-3
allele num: 7620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.160000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

DP
type: SiteQuality
SIO_000300: 2.02035e5

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.576e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 6.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 1601
bin: 2.25e1
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GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 13
bin: 9.25e1
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GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4114
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.311303435615001e-4
allele num: 7626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.465e1

DP
type: SiteQuality
SIO_000300: 2.16173e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.003e0

FS
type: SiteQuality
SIO_000300: 5.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.413e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.33e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.221e0

DP
type: SiteQuality
SIO_000300: 3.20761e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.77e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.173e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.32865e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6139
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.439677512237259e-4
allele num: 6946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.585e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.354e-1

FS
type: SiteQuality
SIO_000300: 5.595e0

MQ
type: SiteQuality
SIO_000300: 6.022e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.366e0

DP
type: SiteQuality
SIO_000300: 4.2333e5

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 727
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 48
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variant carriers: 2

GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 23004
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variant carriers: 5

GenotypeQuality
all individuals: 116
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 9

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.136752136752137e-3
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.769315978953199e-4
allele num: 7222
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 3.987240829346093e-2
allele num: 1254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 6.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.14e-1

DP
type: SiteQuality
SIO_000300: 4.37152e5

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 1665
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variant carriers: 0

GenotypeQuality
all individuals: 6319
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variant carriers: 0

GenotypeQuality
all individuals: 890
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 633
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GenotypeQuality
all individuals: 24957
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 2

GenotypeQuality
all individuals: 691
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.5220700152207e-3
allele num: 1314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.241002730206007e-4
allele num: 8058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.67e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.51e-2

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

FS
type: SiteQuality
SIO_000300: 7.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

DP
type: SiteQuality
SIO_000300: 4.50171e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 869
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 4
allele frequency: 2.597402597402597e-3
allele num: 1540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 5.05096e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

FS
type: SiteQuality
SIO_000300: 1.0882e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.137e1

VQSLOD
type: SiteQuality
SIO_000300: -9.663e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.38e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.142506142506142e-4
allele num: 1628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.759398496240601e-3
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

FS
type: SiteQuality
SIO_000300: 4.351e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 5.1769e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 944
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.269e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.824e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

DP
type: SiteQuality
SIO_000300: 5.48588e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 166
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.148633126579371e-4
allele num: 8706
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

QD
type: SiteQuality
SIO_000300: 1.312e1

FS
type: SiteQuality
SIO_000300: 2.443e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 5.57244e5

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.29324929507381e-5
allele num: 12058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 5.57244e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.443e0

QD
type: SiteQuality
SIO_000300: 1.312e1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.899406651028011e-5
allele num: 14494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 6.00135e5

MQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.266e0

QD
type: SiteQuality
SIO_000300: 1.88e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.633e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.871540099361249e-5
allele num: 33816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.6224e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.435e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2103
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.65041081367612e-5
allele num: 37730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.1413e5

QD
type: SiteQuality
SIO_000300: 1.528e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 24699
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 36
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variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12242
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.635041802980734e-4
allele num: 5502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 9.26904e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 893
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GenotypeQuality
all individuals: 2965
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.56278831368529e-4
allele num: 7804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.059044e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.511300853842291e-4
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.847439057792385e-5
allele num: 14604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 1.182536e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.728569506122998e-5
allele num: 14862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.416e1

DP
type: SiteQuality
SIO_000300: 1.209543e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
all individuals: 106
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.271617497456765e-4
allele num: 7864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

MQRankSum
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SIO_000300: -7.37e-1

DP
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SIO_000300: 1.272805e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
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allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ReadPosRankSum
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510665296996797e-5
allele num: 66196
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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FS
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.40401e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.40453e6

MQRankSum
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SIO_000300: -3.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.734003814808393e-4
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

DP
type: SiteQuality
SIO_000300: 1.407132e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -9.4e-2

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
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East Asian
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allele frequency: 0.0e0
allele num: 8648
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African
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allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.500315022051544e-5
allele num: 66662
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South Asian
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
type: Population
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allele num: 11574
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Other
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South Asian
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East Asian
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African
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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East Asian
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
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SIO_000300: 1.163e1

FS
type: SiteQuality
SIO_000300: 1.559e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

DP
type: SiteQuality
SIO_000300: 1.418388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48597
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.94e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.81e0

FS
type: SiteQuality
SIO_000300: 1.0313e1

DP
type: SiteQuality
SIO_000300: 1.418479e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99895036737142e-5
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.05e-1

DP
type: SiteQuality
SIO_000300: 1.418616e6

QD
type: SiteQuality
SIO_000300: 1.158e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.883e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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variant carriers: 0

South Asian
type: Population
allele count: 245
allele frequency: 1.483769379844961e-2
allele num: 16512
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 1098
allele frequency: 1.646275638718964e-2
allele num: 66696
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 102
allele frequency: 1.542649727767695e-2
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.888503755054882e-3
allele num: 10386
num of homozygotes: 1

Latino
type: Population
allele count: 30
allele frequency: 2.592016588906169e-3
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.040703052728955e-3
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 1.434878587196468e-2
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 1.113e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.526071e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.442895e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.796e0

QD
type: SiteQuality
SIO_000300: 1.32e1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.442892e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.156336725254394e-3
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.443646e6

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.888e1

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.443159e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 613
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 1.44321e6

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 892
bin: 9.75e1
variant carriers: 284

GenotypeQuality
all individuals: 438
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variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
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European (Non-Finnish)
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allele frequency: 3.147670723664488e-4
allele num: 66716
num of homozygotes: 0

European (Finnish)
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allele count: 10
allele frequency: 1.511944360447536e-3
allele num: 6614
num of homozygotes: 0

African
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allele count: 237
allele frequency: 2.278846153846154e-2
allele num: 10400
num of homozygotes: 4

Latino
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allele frequency: 1.38217000691085e-3
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 5.11e-1

MQRankSum
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SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.463578e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
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Other
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allele frequency: 0.0e0
allele num: 908
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South Asian
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MQRankSum
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FS
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: 9.57e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.601e0

ReadPosRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

VQSLOD
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.413e0

ClippingRankSum
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SIO_000300: -4.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
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QD
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66722
num of homozygotes: 0

East Asian
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Other
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Latino
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European (Finnish)
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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African
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East Asian
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VQSLOD
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QD
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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African
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Other
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European (Finnish)
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BaseQRankSum
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MQ
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QD
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 1.0806e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

European (Non-Finnish)
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allele count: 8
allele frequency: 1.198968886757389e-4
allele num: 66724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
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ClippingRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: 9.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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African
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allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.460896e6

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele num: 10396
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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DP
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QD
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ClippingRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 9.59e-1

MQRankSum
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MQ
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SIO_000300: 5.947e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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Latino
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allele frequency: 0.0e0
allele num: 11574
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66646
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African
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South Asian
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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MQ
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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