X-41428877-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428877
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428877
    reference: chr 0
allele count: 2
allele frequency: 2.301919801114129e-5
allele num: 86884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.193+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1582+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.427+44T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1564+44T>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6625
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

X-41428908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428908
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428908
    reference: chr 0
allele count: 1
allele frequency: 1.14558035100582e-5
allele num: 87292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.193+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.427+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1564+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1582+13T>C
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

X-41428909-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428909
    reference: chr 0
allele count: 1
allele frequency: 1.145436010217289e-5
allele num: 87303
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.427+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1564+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.193+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1582+12A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

X-41428918-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428918
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428919
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87385
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.427+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.193+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1564+2dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1582+2dupT
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1582+2dupT
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-41428940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428940
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428940
    reference: chr 0
allele count: 1
allele frequency: 1.143026964006081e-5
allele num: 87487
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1563G>A
  hgvsp: ENST00000378166.4:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1563G>A
  hgvsp: ENST00000378163.1:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1563G>A
  hgvsp: ENST00000378158.1:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.174G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1563G>A
  hgvsp: ENST00000318588.9:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1563G>A
  hgvsp: ENST00000442742.2:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.408G>A
  hgvsp: ENST00000378179.3:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1563G>A
  hgvsp: ENST00000361962.4:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1563G>A
  hgvsp: ENST00000378154.1:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1545G>A
  hgvsp: ENST00000421587.2:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly521Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

X-41428943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428943
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428943
    reference: chr 0
allele count: 1
allele frequency: 1.143066160669379e-5
allele num: 87484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1560T>C
  hgvsp: ENST00000361962.4:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1560T>C
  hgvsp: ENST00000442742.2:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1560T>C
  hgvsp: ENST00000378166.4:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1560T>C
  hgvsp: ENST00000378163.1:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.171T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.405T>C
  hgvsp: ENST00000378179.3:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1560T>C
  hgvsp: ENST00000378154.1:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1542T>C
  hgvsp: ENST00000421587.2:c.1542T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1560T>C
  hgvsp: ENST00000318588.9:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1560T>C
  hgvsp: ENST00000378158.1:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His520His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-41428967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428967
    reference: chr 0
allele count: 2
allele frequency: 2.288748512313467e-5
allele num: 87384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1536T>C
  hgvsp: ENST00000378163.1:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1536T>C
  hgvsp: ENST00000378154.1:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1536T>C
  hgvsp: ENST00000442742.2:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1536T>C
  hgvsp: ENST00000318588.9:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1536T>C
  hgvsp: ENST00000378166.4:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1536T>C
  hgvsp: ENST00000361962.4:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1536T>C
  hgvsp: ENST00000378158.1:c.1536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.147T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1518T>C
  hgvsp: ENST00000421587.2:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.381T>C
  hgvsp: ENST00000378179.3:c.381T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His512His
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-41428970-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428970
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428970
    reference: chr 0
allele count: 1
allele frequency: 1.144845903741356e-5
allele num: 87348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1533T>C
  hgvsp: ENST00000378154.1:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.378T>C
  hgvsp: ENST00000378179.3:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1533T>C
  hgvsp: ENST00000378163.1:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1533T>C
  hgvsp: ENST00000378166.4:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1533T>C
  hgvsp: ENST00000442742.2:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1533T>C
  hgvsp: ENST00000361962.4:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1533T>C
  hgvsp: ENST00000318588.9:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1515T>C
  hgvsp: ENST00000421587.2:c.1515T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1533T>C
  hgvsp: ENST00000378158.1:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.144T>C
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn511Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

X-41428994-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041428994
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041428994
    reference: chr 0
allele count: 1
allele frequency: 1.161291821021705e-5
allele num: 86111
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1509C>A
  hgvsp: ENST00000442742.2:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1509C>A
  hgvsp: ENST00000318588.9:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1509C>A
  hgvsp: ENST00000378166.4:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1509C>A
  hgvsp: ENST00000378158.1:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1509C>A
  hgvsp: ENST00000378154.1:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1509C>A
  hgvsp: ENST00000361962.4:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.120C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.354C>A
  hgvsp: ENST00000378179.3:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1491C>A
  hgvsp: ENST00000421587.2:c.1491C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1509C>A
  hgvsp: ENST00000378163.1:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile503Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-41429004-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429005
    reference: chr 0
allele count: 85
allele frequency: 1.107347576862949e-3
allele num: 76760
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-6dupT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-6dupT
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.25e1
  variant carriers: 5
hgvs: c.1504-6dupT
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-41429004-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429003
    reference: chr 0
allele count: 321
allele frequency: 4.181865554976551e-3
allele num: 76760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-6delT
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 9.75e1
  variant carriers: 349
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 3.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 35
hgvs: c.1504-6delT
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: TA
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-41429005-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429005
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429005
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 72581
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-6T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-6T>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1504-6T>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-41429013-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429014
    reference: chr 0
allele count: 39
allele frequency: 4.726871659374356e-4
allele num: 82507
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-15_115-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-15_1486-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-15_1504-14insC
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-15_349-14insC
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8335
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19942
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

X-41429014-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429013
    reference: chr 0
allele count: 2
allele frequency: 2.442807763243072e-5
allele num: 81873
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-16delA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-16delA
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: AT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

X-41429022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429022
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429022
    reference: chr 0
allele count: 1
allele frequency: 1.241634487639529e-5
allele num: 80539
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-23A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

X-41429032-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429032
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429032
    reference: chr 0
allele count: 2
allele frequency: 2.542038969457402e-5
allele num: 78677
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-33C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-33C>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-41429040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041429040
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041429040
    reference: chr 0
allele count: 2
allele frequency: 2.594336563282355e-5
allele num: 77091
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.349-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1486-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.115-41T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1504-41T>C
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11405
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-41437543-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437543
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437543
    reference: chr 0
allele count: 1
allele frequency: 1.269003324788711e-5
allele num: 78802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+50G>T
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

X-41437556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437556
    reference: chr 0
allele count: 183
allele frequency: 2.306121934622073e-3
allele num: 79354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+37G>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15915
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11951
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.75e1
  variant carriers: 5
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

X-41437558-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437558
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437558
    reference: chr 0
allele count: 6
allele frequency: 7.545366516178523e-5
allele num: 79519
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+35A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16980
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-41437560-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437560
    reference: chr 0
allele count: 6
allele frequency: 7.531349241216564e-5
allele num: 79667
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+33A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+33A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28437
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-41437561-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437561
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437561
    reference: chr 0
allele count: 2
allele frequency: 2.511490067056785e-5
allele num: 79634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+32C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+32C>T
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-41437565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437565
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437565
    reference: chr 0
allele count: 1
allele frequency: 1.247676203071779e-5
allele num: 80149
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+28C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+28C>T
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20527
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-41437567-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437567
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437567
    reference: chr 0
allele count: 1
allele frequency: 1.242189732059675e-5
allele num: 80503
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+26T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+26T>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-41437569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437569
    reference: chr 0
allele count: 1
allele frequency: 1.238896391094813e-5
allele num: 80717
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+24A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+24A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-41437572-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437572
    reference: chr 0
allele count: 1
allele frequency: 1.230299824067125e-5
allele num: 81281
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+21T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+21T>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-41437575-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437575
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437575
    reference: chr 0
allele count: 2
allele frequency: 2.449269505370024e-5
allele num: 81657
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+18G>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+18G>T
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-41437578-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437578
    reference: chr 0
allele count: 2
allele frequency: 2.433267635107186e-5
allele num: 82194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+15A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+15A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-41437589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437589
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437589
    reference: chr 0
allele count: 1
allele frequency: 1.181418647511932e-5
allele num: 84644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.348+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.114+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1485+4A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1503+4A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1503+4A>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-41437624-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437624
    reference: chr 0
allele count: 422
allele frequency: 4.915664896095425e-3
allele num: 85848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1472T>G
  hgvsp: ENSP00000398007.2:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1472T>G
  hgvsp: ENSP00000367405.1:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1472T>G
  hgvsp: ENSP00000367396.1:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1472T>G
  hgvsp: ENSP00000367408.4:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1454T>G
  hgvsp: ENSP00000400526.2:p.Val485Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1472T>G
  hgvsp: ENSP00000367400.1:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.317T>G
  hgvsp: ENSP00000367421.3:p.Val106Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1472T>G
  hgvsp: ENSP00000354641.4:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1472T>G
  hgvsp: ENSP00000322727.9:p.Val491Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.83T>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33531
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 9.75e1
  variant carriers: 548
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 19
hgvs: p.Val491Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-41437664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437664
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437664
    reference: chr 0
allele count: 1
allele frequency: 1.148145171475481e-5
allele num: 87097
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1432G>A
  hgvsp: ENSP00000367408.4:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1432G>A
  hgvsp: ENSP00000367405.1:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.277G>A
  hgvsp: ENSP00000367421.3:p.Gly93Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1432G>A
  hgvsp: ENSP00000322727.9:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1432G>A
  hgvsp: ENSP00000367396.1:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1432G>A
  hgvsp: ENSP00000398007.2:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1432G>A
  hgvsp: ENSP00000367400.1:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1414G>A
  hgvsp: ENSP00000400526.2:p.Gly472Arg
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.43G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1432G>A
  hgvsp: ENSP00000354641.4:p.Gly478Arg
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly478Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-41437665-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437665
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437665
    reference: chr 0
allele count: 2
allele frequency: 2.296817758994913e-5
allele num: 87077
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1413C>T
  hgvsp: ENST00000421587.2:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1431C>T
  hgvsp: ENST00000442742.2:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.42C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1431C>T
  hgvsp: ENST00000378158.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1431C>T
  hgvsp: ENST00000318588.9:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1431C>T
  hgvsp: ENST00000378154.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1431C>T
  hgvsp: ENST00000361962.4:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.276C>T
  hgvsp: ENST00000378179.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1431C>T
  hgvsp: ENST00000378166.4:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1431C>T
  hgvsp: ENST00000378163.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn477Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-41437670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437670
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437670
    reference: chr 0
allele count: 1
allele frequency: 1.149055476398401e-5
allele num: 87028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1426G>A
  hgvsp: ENSP00000367396.1:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1426G>A
  hgvsp: ENSP00000367400.1:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1426G>A
  hgvsp: ENSP00000322727.9:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1426G>A
  hgvsp: ENSP00000367408.4:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1426G>A
  hgvsp: ENSP00000367405.1:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.37G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1426G>A
  hgvsp: ENSP00000354641.4:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1426G>A
  hgvsp: ENSP00000398007.2:p.Ala476Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.271G>A
  hgvsp: ENSP00000367421.3:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1408G>A
  hgvsp: ENSP00000400526.2:p.Ala470Thr
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31784
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala476Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-41437677-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437677
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437677
    reference: chr 0
allele count: 2
allele frequency: 2.300728180469118e-5
allele num: 86929
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1419A>G
  hgvsp: ENST00000318588.9:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1419A>G
  hgvsp: ENST00000378158.1:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1401A>G
  hgvsp: ENST00000421587.2:c.1401A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1419A>G
  hgvsp: ENST00000378163.1:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1419A>G
  hgvsp: ENST00000378154.1:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.30A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1419A>G
  hgvsp: ENST00000442742.2:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.264A>G
  hgvsp: ENST00000378179.3:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1419A>G
  hgvsp: ENST00000378166.4:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1419A>G
  hgvsp: ENST00000361962.4:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro473Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-41437685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437685
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437685
    reference: chr 0
allele count: 1
allele frequency: 1.152126826121019e-5
allele num: 86796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1411G>A
  hgvsp: ENSP00000398007.2:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1411G>A
  hgvsp: ENSP00000367396.1:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1411G>A
  hgvsp: ENSP00000367405.1:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.256G>A
  hgvsp: ENSP00000367421.3:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1411G>A
  hgvsp: ENSP00000367400.1:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1393G>A
  hgvsp: ENSP00000400526.2:p.Asp465Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1411G>A
  hgvsp: ENSP00000322727.9:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1411G>A
  hgvsp: ENSP00000367408.4:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1411G>A
  hgvsp: ENSP00000354641.4:p.Asp471Asn
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp471Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

X-41437690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437690
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437690
    reference: chr 0
allele count: 1
allele frequency: 1.152578317696687e-5
allele num: 86762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.17A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1406A>G
  hgvsp: ENSP00000398007.2:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1406A>G
  hgvsp: ENSP00000367396.1:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.251A>G
  hgvsp: ENSP00000367421.3:p.Asn84Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1406A>G
  hgvsp: ENSP00000322727.9:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1406A>G
  hgvsp: ENSP00000367405.1:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1406A>G
  hgvsp: ENSP00000367408.4:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1406A>G
  hgvsp: ENSP00000367400.1:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1406A>G
  hgvsp: ENSP00000354641.4:p.Asn469Ser
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1388A>G
  hgvsp: ENSP00000400526.2:p.Asn463Ser
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47018
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn469Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-41437704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437704
    reference: chr 0
allele count: 18
allele frequency: 2.082032063293775e-4
allele num: 86454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1392C>T
  hgvsp: ENST00000361962.4:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1374C>T
  hgvsp: ENST00000421587.2:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.237C>T
  hgvsp: ENST00000378179.3:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1392C>T
  hgvsp: ENST00000442742.2:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1392C>T
  hgvsp: ENST00000378158.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1392C>T
  hgvsp: ENST00000378163.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1392C>T
  hgvsp: ENST00000378166.4:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1392C>T
  hgvsp: ENST00000378154.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147044
  ensembl transcript: ENST00000472704
  gene symbol: CASK
  hgvsc: ENST00000472704.1:n.3C>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1392C>T
  hgvsp: ENST00000318588.9:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr464Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

X-41437707-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437707
    reference: chr 0
allele count: 1
allele frequency: 1.15700566932778e-5
allele num: 86430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1389C>A
  hgvsp: ENST00000378158.1:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1389C>A
  hgvsp: ENST00000442742.2:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1371C>A
  hgvsp: ENST00000421587.2:c.1371C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.234C>A
  hgvsp: ENST00000378179.3:c.234C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1389C>A
  hgvsp: ENST00000361962.4:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1389C>A
  hgvsp: ENST00000378163.1:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1389C>A
  hgvsp: ENST00000318588.9:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1389C>A
  hgvsp: ENST00000378154.1:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1389C>A
  hgvsp: ENST00000378166.4:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29264
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro463Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-41437727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437727
    reference: chr 0
allele count: 1
allele frequency: 1.16152112806932e-5
allele num: 86094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1369T>C
  hgvsp: ENST00000378163.1:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1369T>C
  hgvsp: ENST00000378154.1:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1369T>C
  hgvsp: ENST00000442742.2:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1369T>C
  hgvsp: ENST00000378166.4:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.214T>C
  hgvsp: ENST00000378179.3:c.214T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1369T>C
  hgvsp: ENST00000378158.1:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1369T>C
  hgvsp: ENST00000318588.9:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1351T>C
  hgvsp: ENST00000421587.2:c.1351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1369T>C
  hgvsp: ENST00000361962.4:c.1369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu457Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

X-41437734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437734
    reference: chr 0
allele count: 3
allele frequency: 3.494670627293377e-5
allele num: 85845
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1362T>C
  hgvsp: ENST00000318588.9:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1362T>C
  hgvsp: ENST00000361962.4:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1362T>C
  hgvsp: ENST00000378158.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1362T>C
  hgvsp: ENST00000378154.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1362T>C
  hgvsp: ENST00000442742.2:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.207T>C
  hgvsp: ENST00000378179.3:c.207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1362T>C
  hgvsp: ENST00000378163.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1362T>C
  hgvsp: ENST00000378166.4:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1344T>C
  hgvsp: ENST00000421587.2:c.1344T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18012
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29614
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp454Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-41437764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437764
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437764
    reference: chr 0
allele count: 3
allele frequency: 3.620127911186195e-5
allele num: 82870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1332C>T
  hgvsp: ENST00000378166.4:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1332C>T
  hgvsp: ENST00000378154.1:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.177C>T
  hgvsp: ENST00000378179.3:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1314C>T
  hgvsp: ENST00000421587.2:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1332C>T
  hgvsp: ENST00000378158.1:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1332C>T
  hgvsp: ENST00000442742.2:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1332C>T
  hgvsp: ENST00000318588.9:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1332C>T
  hgvsp: ENST00000378163.1:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1332C>T
  hgvsp: ENST00000361962.4:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16979
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9021
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His444His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

X-41437779-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437779
    reference: chr 0
allele count: 1
allele frequency: 1.264686168127379e-5
allele num: 79071
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1317C>G
  hgvsp: ENST00000361962.4:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1317C>G
  hgvsp: ENST00000318588.9:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1317C>G
  hgvsp: ENST00000378166.4:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1317C>G
  hgvsp: ENST00000378158.1:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1317C>G
  hgvsp: ENST00000378154.1:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1317C>G
  hgvsp: ENST00000378163.1:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.162C>G
  hgvsp: ENST00000378179.3:c.162C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1317C>G
  hgvsp: ENST00000442742.2:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1299C>G
  hgvsp: ENST00000421587.2:c.1299C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18748
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1317C>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-41437780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437780
    reference: chr 0
allele count: 1
allele frequency: 1.272750413643884e-5
allele num: 78570
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1316C>T
  hgvsp: ENSP00000367408.4:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.161C>T
  hgvsp: ENSP00000367421.3:p.Ala54Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1316C>T
  hgvsp: ENSP00000367396.1:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1316C>T
  hgvsp: ENSP00000367405.1:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1316C>T
  hgvsp: ENSP00000398007.2:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1316C>T
  hgvsp: ENSP00000322727.9:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1316C>T
  hgvsp: ENSP00000354641.4:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1316C>T
  hgvsp: ENSP00000367400.1:p.Ala439Val
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1298C>T
  hgvsp: ENSP00000400526.2:p.Ala433Val
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala439Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-41437785-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437785
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437785
    reference: chr 0
allele count: 1
allele frequency: 1.325714891755379e-5
allele num: 75431
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.160-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1297-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1315-4C>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1315-4C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-41437791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437791
    reference: chr 0
allele count: 10
allele frequency: 1.407875656422025e-4
allele num: 71029
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.160-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1315-10A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1297-10A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11089
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23058
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD

X-41437795-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437795
    reference: chr 0
allele count: 1
allele frequency: 1.460472316747236e-5
allele num: 68471
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.160-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1315-14T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1297-14T>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26767
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

X-41437803-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437803
    reference: chr 0
allele count: 1
allele frequency: 1.6039521380682e-5
allele num: 62346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.160-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1297-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1315-22T>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

X-41437815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041437815
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041437815
    reference: chr 0
allele count: 17
allele frequency: 3.050804874109434e-4
allele num: 55723
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.160-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1315-34G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1297-34G>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18893
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12843
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

X-41446140-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446140
    reference: chr 0
allele count: 2
allele frequency: 2.93573672313067e-5
allele num: 68126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.159+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1296+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1314+20C>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20816
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-41446142-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446142
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446142
    reference: chr 0
allele count: 185
allele frequency: 2.691104807622372e-3
allele num: 68745
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1296+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1314+18T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.159+18T>C
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16058
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21690
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 1
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-41446151-ATTAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446151
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446147
    reference: chr 0
allele count: 1
allele frequency: 1.4024852037811e-5
allele num: 71302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.159+5_159+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1296+5_1296+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1314+5_1314+8delGTAA
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 1
hgvs: c.1314+5_1314+8delGTAA
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: ATTAC
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

X-41446152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446152
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446152
    reference: chr 0
allele count: 1
allele frequency: 1.396765092046819e-5
allele num: 71594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.159+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1296+8A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1314+8A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1314+8A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-41446162-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446162
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446162
    reference: chr 0
allele count: 1
allele frequency: 1.337399026373509e-5
allele num: 74772
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1312A>C
  hgvsp: ENSP00000367408.4:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1312A>C
  hgvsp: ENSP00000398007.2:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.157A>C
  hgvsp: ENSP00000367421.3:p.Met53Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1312A>C
  hgvsp: ENSP00000367400.1:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1312A>C
  hgvsp: ENSP00000367405.1:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1312A>C
  hgvsp: ENSP00000322727.9:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1312A>C
  hgvsp: ENSP00000367396.1:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1312A>C
  hgvsp: ENSP00000354641.4:p.Met438Leu
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1294A>C
  hgvsp: ENSP00000400526.2:p.Met432Leu
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met438Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-41446163-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446163
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446163
    reference: chr 0
allele count: 2
allele frequency: 2.664677041142613e-5
allele num: 75056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1311C>T
  hgvsp: ENST00000442742.2:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1311C>T
  hgvsp: ENST00000378158.1:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1311C>T
  hgvsp: ENST00000361962.4:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1311C>T
  hgvsp: ENST00000378163.1:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1311C>T
  hgvsp: ENST00000378154.1:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1311C>T
  hgvsp: ENST00000378166.4:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1311C>T
  hgvsp: ENST00000318588.9:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.156C>T
  hgvsp: ENST00000378179.3:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1293C>T
  hgvsp: ENST00000421587.2:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe437Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-41446172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446172
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446172
    reference: chr 0
allele count: 1
allele frequency: 1.296697311946472e-5
allele num: 77119
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1302A>G
  hgvsp: ENST00000378166.4:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1302A>G
  hgvsp: ENST00000378163.1:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1284A>G
  hgvsp: ENST00000421587.2:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1302A>G
  hgvsp: ENST00000378154.1:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1302A>G
  hgvsp: ENST00000378158.1:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1302A>G
  hgvsp: ENST00000318588.9:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1302A>G
  hgvsp: ENST00000442742.2:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.147A>G
  hgvsp: ENST00000378179.3:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1302A>G
  hgvsp: ENST00000361962.4:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln434Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-41446185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446185
    reference: chr 0
allele count: 25
allele frequency: 3.189996172004593e-4
allele num: 78370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1289G>A
  hgvsp: ENSP00000367400.1:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.134G>A
  hgvsp: ENSP00000367421.3:p.Arg45His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1289G>A
  hgvsp: ENSP00000354641.4:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1289G>A
  hgvsp: ENSP00000398007.2:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1289G>A
  hgvsp: ENSP00000367396.1:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1289G>A
  hgvsp: ENSP00000367405.1:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1289G>A
  hgvsp: ENSP00000367408.4:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1271G>A
  hgvsp: ENSP00000400526.2:p.Arg424His
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1289G>A
  hgvsp: ENSP00000322727.9:p.Arg430His
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg430His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-41446186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446186
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446186
    reference: chr 0
allele count: 3
allele frequency: 3.822240342472735e-5
allele num: 78488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1288C>T
  hgvsp: ENSP00000322727.9:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1288C>T
  hgvsp: ENSP00000354641.4:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1288C>T
  hgvsp: ENSP00000367408.4:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1288C>T
  hgvsp: ENSP00000398007.2:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1288C>T
  hgvsp: ENSP00000367405.1:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1288C>T
  hgvsp: ENSP00000367396.1:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1270C>T
  hgvsp: ENSP00000400526.2:p.Arg424Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1288C>T
  hgvsp: ENSP00000367400.1:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.133C>T
  hgvsp: ENSP00000367421.3:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg430Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-41446190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446190
    reference: chr 0
allele count: 2
allele frequency: 2.542846971469257e-5
allele num: 78652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1284A>G
  hgvsp: ENST00000318588.9:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1284A>G
  hgvsp: ENST00000378166.4:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1284A>G
  hgvsp: ENST00000378158.1:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1284A>G
  hgvsp: ENST00000378154.1:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1284A>G
  hgvsp: ENST00000442742.2:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1284A>G
  hgvsp: ENST00000361962.4:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1266A>G
  hgvsp: ENST00000421587.2:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1284A>G
  hgvsp: ENST00000378163.1:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.129A>G
  hgvsp: ENST00000378179.3:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu428Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

X-41446199-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446199
    reference: chr 0
allele count: 1
allele frequency: 1.27244270826706e-5
allele num: 78589
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1275A>G
  hgvsp: ENST00000318588.9:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1275A>G
  hgvsp: ENST00000361962.4:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1257A>G
  hgvsp: ENST00000421587.2:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1275A>G
  hgvsp: ENST00000378166.4:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1275A>G
  hgvsp: ENST00000378163.1:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1275A>G
  hgvsp: ENST00000442742.2:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1275A>G
  hgvsp: ENST00000378154.1:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.120A>G
  hgvsp: ENST00000378179.3:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1275A>G
  hgvsp: ENST00000378158.1:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9969
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala425Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-41446202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446202
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446202
    reference: chr 0
allele count: 1
allele frequency: 1.272880018329472e-5
allele num: 78562
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1272C>T
  hgvsp: ENST00000378166.4:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1272C>T
  hgvsp: ENST00000378158.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1272C>T
  hgvsp: ENST00000318588.9:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.117C>T
  hgvsp: ENST00000378179.3:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1272C>T
  hgvsp: ENST00000378163.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1272C>T
  hgvsp: ENST00000361962.4:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1272C>T
  hgvsp: ENST00000378154.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1272C>T
  hgvsp: ENST00000442742.2:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1254C>T
  hgvsp: ENST00000421587.2:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp424Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-41446212-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446212
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446212
    reference: chr 0
allele count: 1
allele frequency: 1.282347208330127e-5
allele num: 77982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1262A>G
  hgvsp: ENSP00000367405.1:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1262A>G
  hgvsp: ENSP00000322727.9:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1262A>G
  hgvsp: ENSP00000367396.1:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1262A>G
  hgvsp: ENSP00000367408.4:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1262A>G
  hgvsp: ENSP00000367400.1:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1262A>G
  hgvsp: ENSP00000398007.2:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1262A>G
  hgvsp: ENSP00000354641.4:p.Glu421Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.107A>G
  hgvsp: ENSP00000367421.3:p.Glu36Gly
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1244A>G
  hgvsp: ENSP00000400526.2:p.Glu415Gly
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu421Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-41446260-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446260
    reference: chr 0
allele count: 1
allele frequency: 1.526973995632854e-5
allele num: 65489
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1234-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.79-20A>T
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1216-20A>T
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-41446260-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446260
    reference: chr 0
allele count: 1
allele frequency: 1.526973995632854e-5
allele num: 65489
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.79-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1216-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1234-20A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-41446262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446262
    reference: chr 0
allele count: 583
allele frequency: 8.943089430894309e-3
allele num: 65190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.79-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1216-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1234-22G>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 7.5e0
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 1.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17901
  bin: 1.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 11
num of homozygotes: 30
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

X-41446264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446264
    reference: chr 0
allele count: 1
allele frequency: 1.534118802160039e-5
allele num: 65184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.79-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1216-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1234-24T>C
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-41446270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446270
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446270
    reference: chr 0
allele count: 535
allele frequency: 8.546598932873255e-3
allele num: 62598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1216-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.79-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1234-30G>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18296
  bin: 1.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 2.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 2.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 7.5e0
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 1.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 22551
  bin: 2.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6828
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 11
num of homozygotes: 25
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-41446282-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041446282
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041446282
    reference: chr 0
allele count: 1
allele frequency: 1.770694997786631e-5
allele num: 56475
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1216-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.79-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1234-42T>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-41448719-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041448719
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041448719
    reference: chr 0
allele count: 32
allele frequency: 5.005005005005005e-4
allele num: 63936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.78+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1233+49C>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1215+49C>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7782
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10798
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 1.75e1
  variant carriers: 4
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-41448724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041448724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041448724
    reference: chr 0
allele count: 3
allele frequency: 4.682086337672066e-5
allele num: 64074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.78+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1215+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1233+44G>A
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12413
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-41448730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041448730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041448730
    reference: chr 0
allele count: 4
allele frequency: 6.17875127436745e-5
allele num: 64738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367400
  ensembl transcript: ENST00000378158
  gene symbol: CASK
  hgvsc: ENST00000378158.1:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000400526
  ensembl transcript: ENST00000421587
  gene symbol: CASK
  hgvsc: ENST00000421587.2:c.1215+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367396
  ensembl transcript: ENST00000378154
  gene symbol: CASK
  hgvsc: ENST00000378154.1:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367421
  ensembl transcript: ENST00000378179
  gene symbol: CASK
  hgvsc: ENST00000378179.3:c.78+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367405
  ensembl transcript: ENST00000378163
  gene symbol: CASK
  hgvsc: ENST00000378163.1:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000398007
  ensembl transcript: ENST00000442742
  gene symbol: CASK
  hgvsc: ENST00000442742.2:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000322727
  ensembl transcript: ENST00000318588
  gene symbol: CASK
  hgvsc: ENST00000318588.9:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000367408
  ensembl transcript: ENST00000378166
  gene symbol: CASK
  hgvsc: ENST00000378166.4:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147044
  ensembl protein: ENSP00000354641
  ensembl transcript: ENST00000361962
  gene symbol: CASK
  hgvsc: ENST00000361962.4:c.1233+38A>G
  variant of: http://identifiers.org/hgnc/1497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 514
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7953
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9217
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.99541055572184e-4
allele num: 10023
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8449
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.73e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
SIO_000300: 3.452e1

DP
type: SiteQuality
SIO_000300: 1.966655e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

GenotypeQuality
all individuals: 2072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180776951233912e-4
allele num: 8469
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9247
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10063
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47749
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

DP
type: SiteQuality
SIO_000300: 2.017007e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

QD
type: SiteQuality
SIO_000300: 1.418e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

FS
type: SiteQuality
SIO_000300: 6.969e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6624
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34589
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.081431815724019e-4
allele num: 9247
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47752
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.759999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.017676e6

QD
type: SiteQuality
SIO_000300: 3.432e1

GenotypeQuality
all individuals: 2072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34999
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6625
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 952
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10079
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

QD
type: SiteQuality
SIO_000300: 6.05e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 2.021699e6

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6624
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.080030240846744e-4
allele num: 9259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.026817e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.760000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.579e0

VQSLOD
type: SiteQuality
SIO_000300: -2.156e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.99e-1

QD
type: SiteQuality
SIO_000300: 2.896e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 35262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6623
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089209234304815e-5
allele num: 47865
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.899e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.856e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.365e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.381e1

DP
type: SiteQuality
SIO_000300: 2.026763e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.883e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.925558312655087e-5
allele num: 10075
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8457
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090956612650287e-5
allele num: 47825
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.993e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.69e-2

FS
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
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SIO_000300: -2.661e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.344e0

MQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

DP
type: SiteQuality
SIO_000300: 2.023629e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

QD
type: SiteQuality
SIO_000300: 2.009e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47807
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183712121212121e-4
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9247
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.144e0

DP
type: SiteQuality
SIO_000300: 2.021661e6

QD
type: SiteQuality
SIO_000300: 1.442e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.05e-1

MQ
type: SiteQuality
SIO_000300: 5.81e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 799
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GenotypeQuality
all individuals: 2039
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.217433649866082e-4
allele num: 8214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4473
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9929
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.976932e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

FS
type: SiteQuality
SIO_000300: 2.796e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

VQSLOD
type: SiteQuality
SIO_000300: -6.061e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 4.03e0

GenotypeQuality
all individuals: 7220
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variant carriers: 45

GenotypeQuality
all individuals: 20873
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variant carriers: 5

GenotypeQuality
all individuals: 1547
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
all individuals: 1044
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 49

GenotypeQuality
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variant carriers: 50

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
all individuals: 1185
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 593
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variant carriers: 9

GenotypeQuality
all individuals: 582
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 9.747283836150536e-4
allele num: 42063
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.550716061072316e-4
allele num: 8449
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.805986103687868e-3
allele num: 7484
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.641766540797899e-4
allele num: 6091
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4325
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 2.435897435897436e-3
allele num: 7800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.953388e6

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 2257
bin: 3.25e1
variant carriers: 91

GenotypeQuality
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variant carriers: 80

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 275

East Asian
type: Population
allele count: 12
allele frequency: 1.970119848957478e-3
allele num: 6091
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 235
allele frequency: 5.586857808525307e-3
allele num: 42063
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.936416184971098e-4
allele num: 4325
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.405130946018172e-3
allele num: 7484
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.893715232571902e-3
allele num: 8449
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 4.615384615384616e-3
allele num: 7800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.953388e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
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SIO_000300: -2.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
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SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

QD
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4982
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4277
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5893
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7193
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6853
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 519
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
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SIO_000300: -2.23e-2

BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.881e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9531
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6293
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
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African
type: Population
allele count: 39
allele frequency: 5.004491210060311e-3
allele num: 7793
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.034e1

QD
type: SiteQuality
SIO_000300: 1.755e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

VQSLOD
type: SiteQuality
SIO_000300: 5.36e0

DP
type: SiteQuality
SIO_000300: 1.659537e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.55e-2

GenotypeQuality
all individuals: 174
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 8.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 3.25e1
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GenotypeQuality
all individuals: 26417
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5859
bin: 6.75e1
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GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7673
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.116626097999788e-4
allele num: 9449
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44579
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.14e0

QD
type: SiteQuality
SIO_000300: 3.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: -2.377e0

MQ
type: SiteQuality
SIO_000300: 6.012e1

FS
type: SiteQuality
SIO_000300: 1.3731e1

DP
type: SiteQuality
SIO_000300: 1.647404e6

GenotypeQuality
all individuals: 392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 923
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8897
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6131
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.289377289377289e-5
allele num: 43680
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.527528e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 804
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variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4285
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8795
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.709206498704968e-5
allele num: 42470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7437
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 2.724e1

VQSLOD
type: SiteQuality
SIO_000300: -2.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.416557e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
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variant carriers: 0

GenotypeQuality
all individuals: 2091
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.82392667631452e-5
allele num: 41460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4239
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7291
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 1.35456e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeQuality
all individuals: 5667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3934
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2405
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GenotypeQuality
all individuals: 5127
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 3420
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variant carriers: 0

GenotypeQuality
all individuals: 995
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variant carriers: 0

GenotypeQuality
all individuals: 757
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variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8261
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.140901312036509e-4
allele num: 8765
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7371
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43487
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.336e1

VQSLOD
type: SiteQuality
SIO_000300: -1.445e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.274736e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 7563
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 449
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4396
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 26524
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3189
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1807
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 318
bin: 8.25e1
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GenotypeQuality
all individuals: 2613
bin: 9.75e1
variant carriers: 152

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 451
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 179
allele frequency: 2.159227985524729e-2
allele num: 8290
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.284930880840855e-5
allele num: 43765
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7509
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.407155025553663e-4
allele num: 8805
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.57e1

DP
type: SiteQuality
SIO_000300: 1.326641e6

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.624e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.388e0

FS
type: SiteQuality
SIO_000300: 8.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 27588
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3153
bin: 2.75e1
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GenotypeQuality
all individuals: 5118
bin: 3.25e1
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GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
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GenotypeQuality
all individuals: 404
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GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 3497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
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GenotypeQuality
all individuals: 1413
bin: 4.25e1
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GenotypeQuality
all individuals: 187
bin: 9.25e1
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GenotypeQuality
all individuals: 7568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.231529468482585e-4
allele num: 8297
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

DP
type: SiteQuality
SIO_000300: 1.332482e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -1.119e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 2.312e1

GenotypeQuality
all individuals: 373
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
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GenotypeQuality
all individuals: 3772
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 231
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
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GenotypeQuality
all individuals: 1250
bin: 4.75e1
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GenotypeQuality
all individuals: 7611
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 701
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 9.25e1
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GenotypeQuality
all individuals: 655
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4913
bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.138200277720868e-4
allele num: 43929
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6279
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4167
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.133915409910421e-4
allele num: 8819
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 1.083e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-2

QD
type: SiteQuality
SIO_000300: 1.674e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.343488e6

GenotypeQuality
all individuals: 3029
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29334
bin: 6.25e1
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GenotypeQuality
all individuals: 2482
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4165
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.555289830315454e-5
allele num: 43905
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8819
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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SIO_000300: -1.36e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 1.350271e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8853
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4189
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7715
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.263160277010818e-5
allele num: 44186
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 580
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.569e0

DP
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.253216466505937e-5
allele num: 44381
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8329
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8883
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4205
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.0e-3

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 3.053e0

VQSLOD
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MQRankSum
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DP
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MQ
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QD
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SIO_000300: 9.65e0

BaseQRankSum
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SIO_000300: 1.71e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4219
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.200192030724916e-4
allele num: 8332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6345
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.405999e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

FS
type: SiteQuality
SIO_000300: 4.647e0

ReadPosRankSum
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SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

BaseQRankSum
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SIO_000300: 3.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.703e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.231345947875759e-5
allele num: 44816
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8932
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.426814e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.441088955011769e-5
allele num: 45034
num of homozygotes: 0

Latino
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African
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South Asian
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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allele frequency: 2.388059701492537e-4
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South Asian
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 2.150075252633842e-5
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South Asian
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 23

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 890
bin: 2.25e1
variant carriers: 19

GenotypeQuality
all individuals: 361
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1620
bin: 9.75e1
variant carriers: 443

GenotypeQuality
all individuals: 804
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4604
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 311
bin: 8.25e1
variant carriers: 12

Latino
type: Population
allele count: 3
allele frequency: 3.257682701704854e-4
allele num: 9209
num of homozygotes: 0

African
type: Population
allele count: 159
allele frequency: 1.924007744433688e-2
allele num: 8264
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.4e-3
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9867
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 238
allele frequency: 5.064799642484731e-3
allele num: 46991
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.086427267194157e-4
allele num: 6572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 3.240740740740741e-3
allele num: 4320
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.670091e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.243e0

VQSLOD
type: SiteQuality
SIO_000300: -2.985e2

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 2.5584e2

QD
type: SiteQuality
SIO_000300: 8.6e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47689
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

DP
type: SiteQuality
SIO_000300: 1.535287e6

GenotypeQuality
all individuals: 320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
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variant carriers: 0

GenotypeQuality
all individuals: 1087
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.194630872483221e-5
allele num: 47680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.202e0

MQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.773e-1

FS
type: SiteQuality
SIO_000300: 9.43e0

DP
type: SiteQuality
SIO_000300: 1.535013e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.12e-1

QD
type: SiteQuality
SIO_000300: 1.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

GenotypeQuality
all individuals: 48744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47649
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.01010101010101e-4
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.531765e6

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 2.723e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 47731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 519
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.159827213822894e-4
allele num: 9260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47585
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9879
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.525908e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.072e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 798
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variant carriers: 0

GenotypeQuality
all individuals: 362
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 692
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 309
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GenotypeQuality
all individuals: 46569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47495
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8487
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9861
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.080613788631943e-4
allele num: 9254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.209e0

MQ
type: SiteQuality
SIO_000300: 5.517e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

FS
type: SiteQuality
SIO_000300: 1.414e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.522878e6

VQSLOD
type: SiteQuality
SIO_000300: -1.932e-1

QD
type: SiteQuality
SIO_000300: 1.03e1

GenotypeQuality
all individuals: 4923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
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variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 451
bin: 5.25e1
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GenotypeQuality
all individuals: 595
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
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GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106105600134791e-5
allele num: 47481
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4461
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9853
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 2.968e1

VQSLOD
type: SiteQuality
SIO_000300: -2.737e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.522082e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.333e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 649
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GenotypeQuality
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GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 1309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 9.75e1
variant carriers: 16

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 3.807509254362771e-4
allele num: 47275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.407e-1

FS
type: SiteQuality
SIO_000300: 1.137e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

QD
type: SiteQuality
SIO_000300: 1.717e1

DP
type: SiteQuality
SIO_000300: 1.513107e6

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeQuality
all individuals: 4669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45142
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47269
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.253267237494367e-4
allele num: 4438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.887e1

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.512017e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

GenotypeQuality
all individuals: 4769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9215
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6569
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.181055863942365e-4
allele num: 8467
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

QD
type: SiteQuality
SIO_000300: 1.249e1

DP
type: SiteQuality
SIO_000300: 1.513986e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 4754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 7.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6559
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.095975232198143e-4
allele num: 9690
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.389999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

DP
type: SiteQuality
SIO_000300: 1.509033e6

QD
type: SiteQuality
SIO_000300: 2.359e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 599
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variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.391772303276728e-4
allele num: 8362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4189
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8959
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.218820031507244e-5
allele num: 45069
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 1.429681e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 3790
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
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variant carriers: 0

GenotypeQuality
all individuals: 16039
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8913
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8621
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.639344262295082e-4
allele num: 6100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.32578e6

QD
type: SiteQuality
SIO_000300: 2.782e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
all individuals: 1193
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16783
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.35748974491961e-5
allele num: 42418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8137
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8565
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.757e0

QD
type: SiteQuality
SIO_000300: 1.841e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.608e0

DP
type: SiteQuality
SIO_000300: 1.313429e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.466760403562002e-5
allele num: 40539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7941
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5781
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3793
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 1.230899e6

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.25e1
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GenotypeQuality
all individuals: 1197
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 3
allele frequency: 3.67331945634872e-4
allele num: 8167
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.802281368821293e-3
allele num: 526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5337
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.316655694535879e-4
allele num: 37975
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

QD
type: SiteQuality
SIO_000300: 1.838e1

DP
type: SiteQuality
SIO_000300: 1.118885e6

FS
type: SiteQuality
SIO_000300: 1.777e0

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7391
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7661
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36477
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.26055716626749e-4
allele num: 7933
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.15e-2

FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 3.023e1

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 1.057595e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 7357
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33029
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.290950744558992e-4
allele num: 4365
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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DP
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SIO_000300: 9.19036e5

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.225e0

QD
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SIO_000300: 5.12e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6729
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 2.253702511268513e-3
allele num: 6212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29331
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3563
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 449
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.484975332635671e-4
allele num: 6689
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 7.97588e5

FS
type: SiteQuality
SIO_000300: 2.807e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.85e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.73e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35452
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.666361136571952e-4
allele num: 5455
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3701
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.424e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.228045e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 146

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 1.956947162426614e-3
allele num: 511
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.25675505843911e-4
allele num: 7957
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 180
allele frequency: 5.020080321285141e-3
allele num: 35856
num of homozygotes: 1

African
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allele count: 2
allele frequency: 2.734855736359907e-4
allele num: 7313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3728
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.270809505655102e-4
allele num: 7869
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e0

QD
type: SiteQuality
SIO_000300: 1.811e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.912e-1

FS
type: SiteQuality
SIO_000300: 1.414e0

DP
type: SiteQuality
SIO_000300: 1.243309e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 519
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.222344456667889e-4
allele num: 8181
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37425
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.498e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -5.39e-1

DP
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.777e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7519
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.733102253032929e-4
allele num: 5770
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3877
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37617
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8207
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.299462e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.523340903356043e-5
allele num: 39630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 537
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4027
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6043
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.19e-1

MQRankSum
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ClippingRankSum
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SIO_000300: -9.2e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.298697014679201e-4
allele num: 6063
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4029
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 3.076e0

DP
type: SiteQuality
SIO_000300: 1.367142e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.409e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.131e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 8.18e0

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37299
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3424
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6187
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41164
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.151410477835348e-4
allele num: 8685
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 553
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4141
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8531
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.682e1

DP
type: SiteQuality
SIO_000300: 1.404716e6

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -4.933e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 1.328e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 751
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 9497
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 747
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 3.25e1
variant carriers: 1

South Asian
type: Population
allele count: 22
allele frequency: 2.537192941990543e-3
allele num: 8671
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.5230225810521e-4
allele num: 7927
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.138433515482696e-4
allele num: 8784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6261
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41951
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

FS
type: SiteQuality
SIO_000300: 1.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.258e-1

DP
type: SiteQuality
SIO_000300: 1.42986e6

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

QD
type: SiteQuality
SIO_000300: 1.809e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
all individuals: 38764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.302820955670697e-4
allele num: 8685
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.380158994620841e-5
allele num: 42014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7937
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

DP
type: SiteQuality
SIO_000300: 1.43226e6

QD
type: SiteQuality
SIO_000300: 1.443e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.725e0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9457
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3420
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.149161112387957e-4
allele num: 8702
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.763668430335097e-3
allele num: 567
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42115
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7945
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8815
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.433906e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.07e1

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42081
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4211
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8805
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.591849729385546e-4
allele num: 6282
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 2.271e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 1.429156e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 37956
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6279
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.375861249703017e-4
allele num: 4209
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42063
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7935
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8708
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.553e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 1.429238e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

GenotypeQuality
all individuals: 685
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4183
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6233
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.142857142857143e-4
allele num: 8750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7901
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.684e0

DP
type: SiteQuality
SIO_000300: 1.412557e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.866e0

QD
type: SiteQuality
SIO_000300: 3.115e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

GenotypeQuality
all individuals: 692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 530
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4891
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5157
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.297353399065905e-4
allele num: 7708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.082317e6

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
SIO_000300: 2.411e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 4891
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5157
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.930402930402931e-5
allele num: 34125
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.471e1

DP
type: SiteQuality
SIO_000300: 1.082317e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.411e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4914
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 499
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 24122
bin: 2.25e1
variant carriers: 28

GenotypeQuality
all individuals: 311
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 11798
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1305
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3750
bin: 9.75e1
variant carriers: 455

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1919
bin: 6.75e1
variant carriers: 4

African
type: Population
allele count: 552
allele frequency: 8.159645232815965e-2
allele num: 6765
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5133
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.044989775051125e-3
allele num: 489
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.831581736288969e-5
allele num: 33969
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 3.566239598467838e-3
allele num: 7571
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7689
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.634e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 1.081438e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.707e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1026
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33977
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.951219512195122e-4
allele num: 5125
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.070976e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

QD
type: SiteQuality
SIO_000300: 4.33e0

GenotypeQuality
all individuals: 4201
bin: 3.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1708
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 543
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 657
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3802
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1734
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 3740
bin: 9.75e1
variant carriers: 448

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1588
bin: 1.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1933
bin: 3.75e1
variant carriers: 13

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8147
bin: 6.25e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7499
num of homozygotes: 0

African
type: Population
allele count: 504
allele frequency: 7.761010163227594e-2
allele num: 6494
num of homozygotes: 25

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.268699601445917e-5
allele num: 32367
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.11522633744856e-3
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 3.530689842476915e-3
allele num: 7364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4916
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

DP
type: SiteQuality
SIO_000300: 1.022849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

QD
type: SiteQuality
SIO_000300: 1.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.288e-1

GenotypeQuality
all individuals: 1183
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9274
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3179
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5831
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.463914507392768e-4
allele num: 6831
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28661
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4431
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.346e-1

QD
type: SiteQuality
SIO_000300: 3.358e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.42628e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

GenotypeQuality
all individuals: 1567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5751
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3211
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6601
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4416
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 659
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 4.182350480970305e-4
allele num: 7173
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5077
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7549
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 8.783354029742254e-4
allele num: 33017
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3217
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

DP
type: SiteQuality
SIO_000300: 1.307719e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

FS
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.587e1

GenotypeQuality
all individuals: 3901
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5743
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6575
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7237
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7559
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7411
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.074135688575663e-5
allele num: 33061
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

FS
type: SiteQuality
SIO_000300: 1.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.008e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.318195e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.228e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.538e1