18-8825643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825643
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825643
    reference: chr 18
allele count: 3
allele frequency: 2.512057877813505e-5
allele num: 119424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4012G>A
  hgvsp: ENSP00000429556.1:p.Ala1338Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4012G>A
  hgvsp: ENSP00000382924.3:p.Ala1338Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5092G>A
  hgvsp: ENSP00000305027.11:p.Ala1698Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2110G>A
  hgvsp: ENSP00000463465.1:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2110G>A
  hgvsp: ENSP00000303670.7:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4135G>A
  hgvsp: ENSP00000352927.3:p.Ala1379Thr
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1379Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

18-8825646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825646
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825646
    reference: chr 18
allele count: 1
allele frequency: 8.367080558251614e-6
allele num: 119516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2113A>G
  hgvsp: ENSP00000463465.1:p.Lys705Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2113A>G
  hgvsp: ENSP00000303670.7:p.Lys705Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4138A>G
  hgvsp: ENSP00000352927.3:p.Lys1380Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4015A>G
  hgvsp: ENSP00000429556.1:p.Lys1339Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4015A>G
  hgvsp: ENSP00000382924.3:p.Lys1339Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5095A>G
  hgvsp: ENSP00000305027.11:p.Lys1699Glu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys1380Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

18-8825655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825655
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825655
    reference: chr 18
allele count: 2
allele frequency: 1.674761346508122e-5
allele num: 119420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4147C>T
  hgvsp: ENSP00000352927.3:p.Arg1383Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2122C>T
  hgvsp: ENSP00000303670.7:p.Arg708Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2122C>T
  hgvsp: ENSP00000463465.1:p.Arg708Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4024C>T
  hgvsp: ENSP00000382924.3:p.Arg1342Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4024C>T
  hgvsp: ENSP00000429556.1:p.Arg1342Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5104C>T
  hgvsp: ENSP00000305027.11:p.Arg1702Cys
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22146
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg1383Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

18-8825690-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825690
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825690
    reference: chr 18
allele count: 2
allele frequency: 1.668529858341815e-5
allele num: 119866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2157G>T
  hgvsp: ENSP00000463465.1:p.Lys719Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4059G>T
  hgvsp: ENSP00000382924.3:p.Lys1353Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4182G>T
  hgvsp: ENSP00000352927.3:p.Lys1394Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2157G>T
  hgvsp: ENSP00000303670.7:p.Lys719Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4059G>T
  hgvsp: ENSP00000429556.1:p.Lys1353Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5139G>T
  hgvsp: ENSP00000305027.11:p.Lys1713Asn
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1394Asn
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

18-8825692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825692
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825692
    reference: chr 18
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2159T>C
  hgvsp: ENSP00000463465.1:p.Leu720Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5141T>C
  hgvsp: ENSP00000305027.11:p.Leu1714Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4061T>C
  hgvsp: ENSP00000382924.3:p.Leu1354Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4061T>C
  hgvsp: ENSP00000429556.1:p.Leu1354Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2159T>C
  hgvsp: ENSP00000303670.7:p.Leu720Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4184T>C
  hgvsp: ENSP00000352927.3:p.Leu1395Pro
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6282
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu1395Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

18-8825696-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825696
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825696
    reference: chr 18
allele count: 1
allele frequency: 8.33541718763024e-6
allele num: 119970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2163G>C
  hgvsp: ENSP00000463465.1:p.Gln721His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5145G>C
  hgvsp: ENSP00000305027.11:p.Gln1715His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4065G>C
  hgvsp: ENSP00000382924.3:p.Gln1355His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4188G>C
  hgvsp: ENSP00000352927.3:p.Gln1396His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4065G>C
  hgvsp: ENSP00000429556.1:p.Gln1355His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2163G>C
  hgvsp: ENSP00000303670.7:p.Gln721His
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1396His
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

18-8825697-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825697
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825697
    reference: chr 18
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2164A>T
  hgvsp: ENSP00000303670.7:p.Arg722Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5146A>T
  hgvsp: ENSP00000305027.11:p.Arg1716Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2164A>T
  hgvsp: ENSP00000463465.1:p.Arg722Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4066A>T
  hgvsp: ENSP00000382924.3:p.Arg1356Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4189A>T
  hgvsp: ENSP00000352927.3:p.Arg1397Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4066A>T
  hgvsp: ENSP00000429556.1:p.Arg1356Trp
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23304
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1397Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

18-8825717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825717
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825717
    reference: chr 18
allele count: 4
allele frequency: 3.326237360298031e-5
allele num: 120256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4086C>T
  hgvsp: ENST00000517570.1:c.4086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2184C>T
  hgvsp: ENST00000306285.7:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2184C>T
  hgvsp: ENST00000518815.1:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4086C>T
  hgvsp: ENST00000400050.3:c.4086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5166C>T
  hgvsp: ENST00000306329.11:c.5166C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4209C>T
  hgvsp: ENST00000359865.3:c.4209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1403Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

18-8825718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825718
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825718
    reference: chr 18
allele count: 4
allele frequency: 3.326624640308711e-5
allele num: 120242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4087G>A
  hgvsp: ENSP00000382924.3:p.Asp1363Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2185G>A
  hgvsp: ENSP00000303670.7:p.Asp729Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4087G>A
  hgvsp: ENSP00000429556.1:p.Asp1363Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4210G>A
  hgvsp: ENSP00000352927.3:p.Asp1404Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2185G>A
  hgvsp: ENSP00000463465.1:p.Asp729Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5167G>A
  hgvsp: ENSP00000305027.11:p.Asp1723Asn
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1404Asn
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

18-8825730-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825730
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825730
    reference: chr 18
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4099A>G
  hgvsp: ENSP00000429556.1:p.Asn1367Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5179A>G
  hgvsp: ENSP00000305027.11:p.Asn1727Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4222A>G
  hgvsp: ENSP00000352927.3:p.Asn1408Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4099A>G
  hgvsp: ENSP00000382924.3:p.Asn1367Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2197A>G
  hgvsp: ENSP00000463465.1:p.Asn733Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2197A>G
  hgvsp: ENSP00000303670.7:p.Asn733Asp
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn1408Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

18-8825738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825738
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825738
    reference: chr 18
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2205G>A
  hgvsp: ENST00000306285.7:c.2205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2205G>A
  hgvsp: ENST00000518815.1:c.2205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4230G>A
  hgvsp: ENST00000359865.3:c.4230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5187G>A
  hgvsp: ENST00000306329.11:c.5187G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4107G>A
  hgvsp: ENST00000517570.1:c.4107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4107G>A
  hgvsp: ENST00000400050.3:c.4107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1410Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-8825740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825740
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825740
    reference: chr 18
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4109C>T
  hgvsp: ENSP00000429556.1:p.Ser1370Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2207C>T
  hgvsp: ENSP00000463465.1:p.Ser736Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4232C>T
  hgvsp: ENSP00000352927.3:p.Ser1411Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5189C>T
  hgvsp: ENSP00000305027.11:p.Ser1730Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4109C>T
  hgvsp: ENSP00000382924.3:p.Ser1370Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2207C>T
  hgvsp: ENSP00000303670.7:p.Ser736Leu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1411Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

18-8825767-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825767
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825767
    reference: chr 18
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4136G>C
  hgvsp: ENSP00000382924.3:p.Ser1379Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4259G>C
  hgvsp: ENSP00000352927.3:p.Ser1420Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5216G>C
  hgvsp: ENSP00000305027.11:p.Ser1739Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2234G>C
  hgvsp: ENSP00000463465.1:p.Ser745Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2234G>C
  hgvsp: ENSP00000303670.7:p.Ser745Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4136G>C
  hgvsp: ENSP00000429556.1:p.Ser1379Thr
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1420Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

18-8825774-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825774
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825774
    reference: chr 18
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2241A>G
  hgvsp: ENST00000306285.7:c.2241A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4266A>G
  hgvsp: ENST00000359865.3:c.4266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2241A>G
  hgvsp: ENST00000518815.1:c.2241A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4143A>G
  hgvsp: ENST00000400050.3:c.4143A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4143A>G
  hgvsp: ENST00000517570.1:c.4143A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5223A>G
  hgvsp: ENST00000306329.11:c.5223A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1422Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

18-8825785-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825785
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825785
    reference: chr 18
allele count: 10
allele frequency: 8.274036074797286e-5
allele num: 120860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2252G>T
  hgvsp: ENSP00000463465.1:p.Arg751Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5234G>T
  hgvsp: ENSP00000305027.11:p.Arg1745Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4154G>T
  hgvsp: ENSP00000429556.1:p.Arg1385Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4154G>T
  hgvsp: ENSP00000382924.3:p.Arg1385Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2252G>T
  hgvsp: ENSP00000303670.7:p.Arg751Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4277G>T
  hgvsp: ENSP00000352927.3:p.Arg1426Leu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26468
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg1426Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

18-8825786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825786
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825786
    reference: chr 18
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4278C>T
  hgvsp: ENST00000359865.3:c.4278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2253C>T
  hgvsp: ENST00000306285.7:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2253C>T
  hgvsp: ENST00000518815.1:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4155C>T
  hgvsp: ENST00000517570.1:c.4155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4155C>T
  hgvsp: ENST00000400050.3:c.4155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5235C>T
  hgvsp: ENST00000306329.11:c.5235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1426Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

18-8825799-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825799
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825799
    reference: chr 18
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4168A>G
  hgvsp: ENSP00000382924.3:p.Arg1390Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4291A>G
  hgvsp: ENSP00000352927.3:p.Arg1431Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2266A>G
  hgvsp: ENSP00000463465.1:p.Arg756Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2266A>G
  hgvsp: ENSP00000303670.7:p.Arg756Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5248A>G
  hgvsp: ENSP00000305027.11:p.Arg1750Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4168A>G
  hgvsp: ENSP00000429556.1:p.Arg1390Gly
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1431Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

18-8825810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825810
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825810
    reference: chr 18
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5259C>T
  hgvsp: ENST00000306329.11:c.5259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4179C>T
  hgvsp: ENST00000400050.3:c.4179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2277C>T
  hgvsp: ENST00000306285.7:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4302C>T
  hgvsp: ENST00000359865.3:c.4302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2277C>T
  hgvsp: ENST00000518815.1:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4179C>T
  hgvsp: ENST00000517570.1:c.4179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1434Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

18-8825813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825813
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825813
    reference: chr 18
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4182G>A
  hgvsp: ENST00000400050.3:c.4182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2280G>A
  hgvsp: ENST00000518815.1:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4305G>A
  hgvsp: ENST00000359865.3:c.4305G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4182G>A
  hgvsp: ENST00000517570.1:c.4182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2280G>A
  hgvsp: ENST00000306285.7:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5262G>A
  hgvsp: ENST00000306329.11:c.5262G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val1435Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

18-8825815-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825815
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825815
    reference: chr 18
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4184A>T
  hgvsp: ENSP00000429556.1:p.His1395Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4307A>T
  hgvsp: ENSP00000352927.3:p.His1436Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2282A>T
  hgvsp: ENSP00000463465.1:p.His761Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2282A>T
  hgvsp: ENSP00000303670.7:p.His761Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5264A>T
  hgvsp: ENSP00000305027.11:p.His1755Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4184A>T
  hgvsp: ENSP00000382924.3:p.His1395Leu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His1436Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/18-8825817-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825817
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825817
    reference: chr 18
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4186A>C
  hgvsp: ENSP00000429556.1:p.Thr1396Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2284A>C
  hgvsp: ENSP00000463465.1:p.Thr762Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4186A>C
  hgvsp: ENSP00000382924.3:p.Thr1396Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4309A>C
  hgvsp: ENSP00000352927.3:p.Thr1437Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2284A>C
  hgvsp: ENSP00000303670.7:p.Thr762Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5266A>C
  hgvsp: ENSP00000305027.11:p.Thr1756Pro
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6584
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr1437Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

18-8825818-C-CAAGCTGCAGAGGAAGCCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825818
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825838
    reference: chr 18
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: CAAGCTGCAGAGGAAGCCCCT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsp: ENSP00000382924.3:p.Thr1397SerfsTer84
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsp: ENSP00000463465.1:p.Thr763SerfsTer84
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsp: ENSP00000305027.11:p.Thr1757SerfsTer84
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsp: ENSP00000303670.7:p.Thr763SerfsTer84
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsp: ENSP00000352927.3:p.Thr1438SerfsTer84
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsp: ENSP00000429556.1:p.Thr1397SerfsTer84
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1438SerfsTer84
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

18-8825819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825819
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825819
    reference: chr 18
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4188C>T
  hgvsp: ENST00000517570.1:c.4188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2286C>T
  hgvsp: ENST00000306285.7:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4188C>T
  hgvsp: ENST00000400050.3:c.4188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2286C>T
  hgvsp: ENST00000518815.1:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5268C>T
  hgvsp: ENST00000306329.11:c.5268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4311C>T
  hgvsp: ENST00000359865.3:c.4311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1437Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

18-8825820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825820
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825820
    reference: chr 18
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2287A>G
  hgvsp: ENSP00000463465.1:p.Thr763Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4189A>G
  hgvsp: ENSP00000382924.3:p.Thr1397Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4189A>G
  hgvsp: ENSP00000429556.1:p.Thr1397Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5269A>G
  hgvsp: ENSP00000305027.11:p.Thr1757Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2287A>G
  hgvsp: ENSP00000303670.7:p.Thr763Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4312A>G
  hgvsp: ENSP00000352927.3:p.Thr1438Ala
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1438Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

18-8825825-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825825
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825825
    reference: chr 18
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5274T>C
  hgvsp: ENST00000306329.11:c.5274T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2292T>C
  hgvsp: ENST00000306285.7:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4194T>C
  hgvsp: ENST00000400050.3:c.4194T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4317T>C
  hgvsp: ENST00000359865.3:c.4317T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2292T>C
  hgvsp: ENST00000518815.1:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4194T>C
  hgvsp: ENST00000517570.1:c.4194T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile1439Ile
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

18-8825837-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825837
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825837
    reference: chr 18
allele count: 890
allele frequency: 7.364867101386912e-3
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2304C>G
  hgvsp: ENST00000306285.7:c.2304C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4206C>G
  hgvsp: ENST00000517570.1:c.4206C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4329C>G
  hgvsp: ENST00000359865.3:c.4329C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4206C>G
  hgvsp: ENST00000400050.3:c.4206C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2304C>G
  hgvsp: ENST00000518815.1:c.2304C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5286C>G
  hgvsp: ENST00000306329.11:c.5286C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26618
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 25697
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 9.75e1
  variant carriers: 869
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6419
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu1443Leu
num of homozygotes: 14
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

18-8825838-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825838
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825838
    reference: chr 18
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4207T>C
  hgvsp: ENSP00000429556.1:p.Ser1403Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4330T>C
  hgvsp: ENSP00000352927.3:p.Ser1444Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5287T>C
  hgvsp: ENSP00000305027.11:p.Ser1763Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2305T>C
  hgvsp: ENSP00000303670.7:p.Ser769Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2305T>C
  hgvsp: ENSP00000463465.1:p.Ser769Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4207T>C
  hgvsp: ENSP00000382924.3:p.Ser1403Pro
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1444Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

18-8825841-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825841
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825841
    reference: chr 18
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5290A>T
  hgvsp: ENSP00000305027.11:p.Ser1764Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2308A>T
  hgvsp: ENSP00000463465.1:p.Ser770Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4210A>T
  hgvsp: ENSP00000429556.1:p.Ser1404Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2308A>T
  hgvsp: ENSP00000303670.7:p.Ser770Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4333A>T
  hgvsp: ENSP00000352927.3:p.Ser1445Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4210A>T
  hgvsp: ENSP00000382924.3:p.Ser1404Cys
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1445Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

18-8825851-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825851
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825851
    reference: chr 18
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2318A>G
  hgvsp: ENSP00000463465.1:p.Asn773Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4343A>G
  hgvsp: ENSP00000352927.3:p.Asn1448Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4220A>G
  hgvsp: ENSP00000429556.1:p.Asn1407Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4220A>G
  hgvsp: ENSP00000382924.3:p.Asn1407Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2318A>G
  hgvsp: ENSP00000303670.7:p.Asn773Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5300A>G
  hgvsp: ENSP00000305027.11:p.Asn1767Ser
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn1448Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/18-8825855-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825855
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825855
    reference: chr 18
allele count: 8
allele frequency: 6.630530276658876e-5
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2322C>A
  hgvsp: ENST00000518815.1:c.2322C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4224C>A
  hgvsp: ENST00000400050.3:c.4224C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4224C>A
  hgvsp: ENST00000517570.1:c.4224C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5304C>A
  hgvsp: ENST00000306329.11:c.5304C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4347C>A
  hgvsp: ENST00000359865.3:c.4347C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2322C>A
  hgvsp: ENST00000306285.7:c.2322C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1449Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

18-8825855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825855
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825855
    reference: chr 18
allele count: 2
allele frequency: 1.657632569164719e-5
allele num: 120654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4224C>T
  hgvsp: ENST00000400050.3:c.4224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4224C>T
  hgvsp: ENST00000517570.1:c.4224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2322C>T
  hgvsp: ENST00000306285.7:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4347C>T
  hgvsp: ENST00000359865.3:c.4347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2322C>T
  hgvsp: ENST00000518815.1:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5304C>T
  hgvsp: ENST00000306329.11:c.5304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26678
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6433
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile1449Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

18-8825856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825856
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825856
    reference: chr 18
allele count: 880
allele frequency: 7.293341510716239e-3
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4225A>G
  hgvsp: ENSP00000429556.1:p.Ile1409Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4225A>G
  hgvsp: ENSP00000382924.3:p.Ile1409Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5305A>G
  hgvsp: ENSP00000305027.11:p.Ile1769Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2323A>G
  hgvsp: ENSP00000303670.7:p.Ile775Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2323A>G
  hgvsp: ENSP00000463465.1:p.Ile775Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4348A>G
  hgvsp: ENSP00000352927.3:p.Ile1450Val
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 25501
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 26671
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6415
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 9.75e1
  variant carriers: 855
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile1450Val
num of homozygotes: 17
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

18-8825859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825859
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825859
    reference: chr 18
allele count: 24
allele frequency: 1.990247785849338e-4
allele num: 120588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2326G>A
  hgvsp: ENSP00000463465.1:p.Asp776Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2326G>A
  hgvsp: ENSP00000303670.7:p.Asp776Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4351G>A
  hgvsp: ENSP00000352927.3:p.Asp1451Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4228G>A
  hgvsp: ENSP00000429556.1:p.Asp1410Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4228G>A
  hgvsp: ENSP00000382924.3:p.Asp1410Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5308G>A
  hgvsp: ENSP00000305027.11:p.Asp1770Asn
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6556
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp1451Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

18-8825863-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825863
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825863
    reference: chr 18
allele count: 1
allele frequency: 8.302751531857658e-6
allele num: 120442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2330A>G
  hgvsp: ENSP00000463465.1:p.His777Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4232A>G
  hgvsp: ENSP00000382924.3:p.His1411Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2330A>G
  hgvsp: ENSP00000303670.7:p.His777Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4232A>G
  hgvsp: ENSP00000429556.1:p.His1411Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4355A>G
  hgvsp: ENSP00000352927.3:p.His1452Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5312A>G
  hgvsp: ENSP00000305027.11:p.His1771Arg
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His1452Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

18-8825867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825867
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825867
    reference: chr 18
allele count: 223
allele frequency: 1.853452574886133e-3
allele num: 120316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2334C>T
  hgvsp: ENST00000306285.7:c.2334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4359C>T
  hgvsp: ENST00000359865.3:c.4359C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5316C>T
  hgvsp: ENST00000306329.11:c.5316C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4236C>T
  hgvsp: ENST00000517570.1:c.4236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4236C>T
  hgvsp: ENST00000400050.3:c.4236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2334C>T
  hgvsp: ENST00000518815.1:c.2334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25338
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 26913
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1453Ser
num of homozygotes: 2
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

18-8825870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825870
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825870
    reference: chr 18
allele count: 15
allele frequency: 1.247421994544608e-4
allele num: 120248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5319C>T
  hgvsp: ENST00000306329.11:c.5319C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4239C>T
  hgvsp: ENST00000517570.1:c.4239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2337C>T
  hgvsp: ENST00000518815.1:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4362C>T
  hgvsp: ENST00000359865.3:c.4362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4239C>T
  hgvsp: ENST00000400050.3:c.4239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2337C>T
  hgvsp: ENST00000306285.7:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26952
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1454Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

18-8825871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825871
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825871
    reference: chr 18
allele count: 5
allele frequency: 4.160010649627263e-5
allele num: 120192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4240G>A
  hgvsp: ENSP00000429556.1:p.Val1414Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5320G>A
  hgvsp: ENSP00000305027.11:p.Val1774Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2338G>A
  hgvsp: ENSP00000303670.7:p.Val780Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4363G>A
  hgvsp: ENSP00000352927.3:p.Val1455Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2338G>A
  hgvsp: ENSP00000463465.1:p.Val780Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4240G>A
  hgvsp: ENSP00000382924.3:p.Val1414Met
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1455Met
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

18-8825875-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825875
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825875
    reference: chr 18
allele count: 1
allele frequency: 8.331944675887353e-6
allele num: 120020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2342T>G
  hgvsp: ENSP00000303670.7:p.Val781Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4367T>G
  hgvsp: ENSP00000352927.3:p.Val1456Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5324T>G
  hgvsp: ENSP00000305027.11:p.Val1775Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4244T>G
  hgvsp: ENSP00000429556.1:p.Val1415Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2342T>G
  hgvsp: ENSP00000463465.1:p.Val781Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4244T>G
  hgvsp: ENSP00000382924.3:p.Val1415Gly
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6474
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val1456Gly
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/18-8825878-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825878
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825878
    reference: chr 18
allele count: 1
allele frequency: 8.344877079960612e-6
allele num: 119834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2345A>C
  hgvsp: ENSP00000463465.1:p.Gln782Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4370A>C
  hgvsp: ENSP00000352927.3:p.Gln1457Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4247A>C
  hgvsp: ENSP00000429556.1:p.Gln1416Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4247A>C
  hgvsp: ENSP00000382924.3:p.Gln1416Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5327A>C
  hgvsp: ENSP00000305027.11:p.Gln1776Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2345A>C
  hgvsp: ENSP00000303670.7:p.Gln782Pro
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln1457Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

18-8825880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825880
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825880
    reference: chr 18
allele count: 1
allele frequency: 8.355754608198667e-6
allele num: 119678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4249G>A
  hgvsp: ENSP00000429556.1:p.Asp1417Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2347G>A
  hgvsp: ENSP00000303670.7:p.Asp783Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5329G>A
  hgvsp: ENSP00000305027.11:p.Asp1777Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2347G>A
  hgvsp: ENSP00000463465.1:p.Asp783Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4249G>A
  hgvsp: ENSP00000382924.3:p.Asp1417Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4372G>A
  hgvsp: ENSP00000352927.3:p.Asp1458Asn
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47194
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp1458Asn
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

18-8825881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825881
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825881
    reference: chr 18
allele count: 2
allele frequency: 1.672492515595993e-5
allele num: 119582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4250A>G
  hgvsp: ENSP00000382924.3:p.Asp1417Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2348A>G
  hgvsp: ENSP00000463465.1:p.Asp783Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4250A>G
  hgvsp: ENSP00000429556.1:p.Asp1417Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5330A>G
  hgvsp: ENSP00000305027.11:p.Asp1777Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4373A>G
  hgvsp: ENSP00000352927.3:p.Asp1458Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2348A>G
  hgvsp: ENSP00000303670.7:p.Asp783Gly
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1458Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

18-8825891-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825891
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825891
    reference: chr 18
allele count: 1
allele frequency: 8.437252155717926e-6
allele num: 118522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5340G>C
  hgvsp: ENSP00000305027.11:p.Gln1780His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2358G>C
  hgvsp: ENSP00000463465.1:p.Gln786His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2358G>C
  hgvsp: ENSP00000303670.7:p.Gln786His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4260G>C
  hgvsp: ENSP00000429556.1:p.Gln1420His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4260G>C
  hgvsp: ENSP00000382924.3:p.Gln1420His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4383G>C
  hgvsp: ENSP00000352927.3:p.Gln1461His
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln1461His
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

18-8825896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825896
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825896
    reference: chr 18
allele count: 3
allele frequency: 2.541726679657714e-5
allele num: 118030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2363G>A
  hgvsp: ENSP00000463465.1:p.Gly788Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4265G>A
  hgvsp: ENSP00000382924.3:p.Gly1422Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2363G>A
  hgvsp: ENSP00000303670.7:p.Gly788Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4388G>A
  hgvsp: ENSP00000352927.3:p.Gly1463Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4265G>A
  hgvsp: ENSP00000429556.1:p.Gly1422Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5345G>A
  hgvsp: ENSP00000305027.11:p.Gly1782Glu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1463Glu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum

18-8825897-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825897
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825897
    reference: chr 18
allele count: 1
allele frequency: 8.489685032685287e-6
allele num: 117790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5346G>T
  hgvsp: ENST00000306329.11:c.5346G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2364G>T
  hgvsp: ENST00000518815.1:c.2364G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4266G>T
  hgvsp: ENST00000400050.3:c.4266G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4266G>T
  hgvsp: ENST00000517570.1:c.4266G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2364G>T
  hgvsp: ENST00000306285.7:c.2364G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4389G>T
  hgvsp: ENST00000359865.3:c.4389G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1463Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

18-8825901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825901
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825901
    reference: chr 18
allele count: 27
allele frequency: 2.301005624680416e-4
allele num: 117340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4270C>T
  hgvsp: ENSP00000382924.3:p.Arg1424Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2368C>T
  hgvsp: ENSP00000463465.1:p.Arg790Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4270C>T
  hgvsp: ENSP00000429556.1:p.Arg1424Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4393C>T
  hgvsp: ENSP00000352927.3:p.Arg1465Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5350C>T
  hgvsp: ENSP00000305027.11:p.Arg1784Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2368C>T
  hgvsp: ENSP00000303670.7:p.Arg790Trp
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22845
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24908
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42672
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1465Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

18-8825902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825902
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825902
    reference: chr 18
allele count: 31
allele frequency: 2.639645776566757e-4
allele num: 117440
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4394G>A
  hgvsp: ENSP00000352927.3:p.Arg1465Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2369G>A
  hgvsp: ENSP00000303670.7:p.Arg790Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4271G>A
  hgvsp: ENSP00000382924.3:p.Arg1424Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2369G>A
  hgvsp: ENSP00000463465.1:p.Arg790Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4271G>A
  hgvsp: ENSP00000429556.1:p.Arg1424Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5351G>A
  hgvsp: ENSP00000305027.11:p.Arg1784Gln
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24882
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22842
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg1465Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

18-8825906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825906
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825906
    reference: chr 18
allele count: 8
allele frequency: 6.839360519791399e-5
allele num: 116970
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4398C>T
  hgvsp: ENST00000359865.3:c.4398C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4275C>T
  hgvsp: ENST00000517570.1:c.4275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2373C>T
  hgvsp: ENST00000518815.1:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4275C>T
  hgvsp: ENST00000400050.3:c.4275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5355C>T
  hgvsp: ENST00000306329.11:c.5355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2373C>T
  hgvsp: ENST00000306285.7:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1466Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

18-8825907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825907
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825907
    reference: chr 18
allele count: 58
allele frequency: 4.959299541692318e-4
allele num: 116952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2374G>A
  hgvsp: ENSP00000463465.1:p.Gly792Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4276G>A
  hgvsp: ENSP00000429556.1:p.Gly1426Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4276G>A
  hgvsp: ENSP00000382924.3:p.Gly1426Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4399G>A
  hgvsp: ENSP00000352927.3:p.Gly1467Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5356G>A
  hgvsp: ENSP00000305027.11:p.Gly1786Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2374G>A
  hgvsp: ENSP00000303670.7:p.Gly792Ser
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24646
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly1467Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/18-8825910-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825910
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825910
    reference: chr 18
allele count: 1
allele frequency: 8.566337719298245e-6
allele num: 116736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5359A>C
  hgvsp: ENSP00000305027.11:p.Ser1787Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4402A>C
  hgvsp: ENSP00000352927.3:p.Ser1468Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2377A>C
  hgvsp: ENSP00000463465.1:p.Ser793Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2377A>C
  hgvsp: ENSP00000303670.7:p.Ser793Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4279A>C
  hgvsp: ENSP00000429556.1:p.Ser1427Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4279A>C
  hgvsp: ENSP00000382924.3:p.Ser1427Arg
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5972
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1468Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

18-8825913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825913
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825913
    reference: chr 18
allele count: 23
allele frequency: 1.975571627355655e-4
allele num: 116422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4282C>T
  hgvsp: ENSP00000429556.1:p.Arg1428Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4282C>T
  hgvsp: ENSP00000382924.3:p.Arg1428Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2380C>T
  hgvsp: ENSP00000303670.7:p.Arg794Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2380C>T
  hgvsp: ENSP00000463465.1:p.Arg794Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4405C>T
  hgvsp: ENSP00000352927.3:p.Arg1469Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5362C>T
  hgvsp: ENSP00000305027.11:p.Arg1788Trp
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1469Trp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

18-8825914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825914
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825914
    reference: chr 18
allele count: 5
allele frequency: 4.295385038314835e-5
allele num: 116404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4406G>A
  hgvsp: ENSP00000352927.3:p.Arg1469Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2381G>A
  hgvsp: ENSP00000463465.1:p.Arg794Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4283G>A
  hgvsp: ENSP00000429556.1:p.Arg1428Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5363G>A
  hgvsp: ENSP00000305027.11:p.Arg1788Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2381G>A
  hgvsp: ENSP00000303670.7:p.Arg794Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4283G>A
  hgvsp: ENSP00000382924.3:p.Arg1428Gln
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg1469Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

18-8825919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825919
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825919
    reference: chr 18
allele count: 2
allele frequency: 1.722445183182045e-5
allele num: 116114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4288C>T
  hgvsp: ENSP00000382924.3:p.Arg1430Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2386C>T
  hgvsp: ENSP00000463465.1:p.Arg796Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4288C>T
  hgvsp: ENSP00000429556.1:p.Arg1430Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5368C>T
  hgvsp: ENSP00000305027.11:p.Arg1790Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2386C>T
  hgvsp: ENSP00000303670.7:p.Arg796Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4411C>T
  hgvsp: ENSP00000352927.3:p.Arg1471Cys
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1471Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

18-8825920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825920
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825920
    reference: chr 18
allele count: 31
allele frequency: 2.673243420371839e-4
allele num: 115964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4289G>A
  hgvsp: ENSP00000429556.1:p.Arg1430His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5369G>A
  hgvsp: ENSP00000305027.11:p.Arg1790His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4412G>A
  hgvsp: ENSP00000352927.3:p.Arg1471His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2387G>A
  hgvsp: ENSP00000463465.1:p.Arg796His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4289G>A
  hgvsp: ENSP00000382924.3:p.Arg1430His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2387G>A
  hgvsp: ENSP00000303670.7:p.Arg796His
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24314
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1471His
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

18-8825933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825933
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825933
    reference: chr 18
allele count: 1
allele frequency: 8.672876446202148e-6
allele num: 115302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2400C>T
  hgvsp: ENST00000518815.1:c.2400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2400C>T
  hgvsp: ENST00000306285.7:c.2400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4302C>T
  hgvsp: ENST00000400050.3:c.4302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4425C>T
  hgvsp: ENST00000359865.3:c.4425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4302C>T
  hgvsp: ENST00000517570.1:c.4302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5382C>T
  hgvsp: ENST00000306329.11:c.5382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1475Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

18-8825934-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825934
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825934
    reference: chr 18
allele count: 1
allele frequency: 8.675434639275428e-6
allele num: 115268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2401C>G
  hgvsp: ENSP00000463465.1:p.Arg801Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2401C>G
  hgvsp: ENSP00000303670.7:p.Arg801Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4426C>G
  hgvsp: ENSP00000352927.3:p.Arg1476Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4303C>G
  hgvsp: ENSP00000382924.3:p.Arg1435Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5383C>G
  hgvsp: ENSP00000305027.11:p.Arg1795Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4303C>G
  hgvsp: ENSP00000429556.1:p.Arg1435Gly
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg1476Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

18-8825934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825934
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825934
    reference: chr 18
allele count: 1
allele frequency: 8.675434639275428e-6
allele num: 115268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4303C>T
  hgvsp: ENSP00000429556.1:p.Arg1435Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4426C>T
  hgvsp: ENSP00000352927.3:p.Arg1476Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2401C>T
  hgvsp: ENSP00000463465.1:p.Arg801Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5383C>T
  hgvsp: ENSP00000305027.11:p.Arg1795Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4303C>T
  hgvsp: ENSP00000382924.3:p.Arg1435Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2401C>T
  hgvsp: ENSP00000303670.7:p.Arg801Ter
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1476Ter
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

18-8825935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825935
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825935
    reference: chr 18
allele count: 36
allele frequency: 3.125542628928633e-4
allele num: 115180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4304G>A
  hgvsp: ENSP00000382924.3:p.Arg1435Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2402G>A
  hgvsp: ENSP00000463465.1:p.Arg801Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4427G>A
  hgvsp: ENSP00000352927.3:p.Arg1476Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5384G>A
  hgvsp: ENSP00000305027.11:p.Arg1795Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4304G>A
  hgvsp: ENSP00000429556.1:p.Arg1435Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2402G>A
  hgvsp: ENSP00000303670.7:p.Arg801Gln
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24223
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22440
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1476Gln
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

18-8825935-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825935
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825935
    reference: chr 18
allele count: 1
allele frequency: 8.682062858135093e-6
allele num: 115180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4304G>C
  hgvsp: ENSP00000382924.3:p.Arg1435Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5384G>C
  hgvsp: ENSP00000305027.11:p.Arg1795Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4427G>C
  hgvsp: ENSP00000352927.3:p.Arg1476Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4304G>C
  hgvsp: ENSP00000429556.1:p.Arg1435Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2402G>C
  hgvsp: ENSP00000463465.1:p.Arg801Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2402G>C
  hgvsp: ENSP00000303670.7:p.Arg801Pro
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1476Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/18-8825937-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825937
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825937
    reference: chr 18
allele count: 4
allele frequency: 3.476447071093343e-5
allele num: 115060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4306C>A
  hgvsp: ENSP00000382924.3:p.Pro1436Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4429C>A
  hgvsp: ENSP00000352927.3:p.Pro1477Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2404C>A
  hgvsp: ENSP00000463465.1:p.Pro802Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4306C>A
  hgvsp: ENSP00000429556.1:p.Pro1436Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5386C>A
  hgvsp: ENSP00000305027.11:p.Pro1796Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2404C>A
  hgvsp: ENSP00000303670.7:p.Pro802Thr
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1477Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

18-8825937-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825937
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825937
    reference: chr 18
allele count: 1
allele frequency: 8.691117677733357e-6
allele num: 115060
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4429C>G
  hgvsp: ENSP00000352927.3:p.Pro1477Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4306C>G
  hgvsp: ENSP00000429556.1:p.Pro1436Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4306C>G
  hgvsp: ENSP00000382924.3:p.Pro1436Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5386C>G
  hgvsp: ENSP00000305027.11:p.Pro1796Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2404C>G
  hgvsp: ENSP00000463465.1:p.Pro802Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2404C>G
  hgvsp: ENSP00000303670.7:p.Pro802Ala
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro1477Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-8825937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825937
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825937
    reference: chr 18
allele count: 5
allele frequency: 4.345558838866679e-5
allele num: 115060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4306C>T
  hgvsp: ENSP00000429556.1:p.Pro1436Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5386C>T
  hgvsp: ENSP00000305027.11:p.Pro1796Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2404C>T
  hgvsp: ENSP00000463465.1:p.Pro802Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4306C>T
  hgvsp: ENSP00000382924.3:p.Pro1436Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4429C>T
  hgvsp: ENSP00000352927.3:p.Pro1477Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2404C>T
  hgvsp: ENSP00000303670.7:p.Pro802Ser
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1477Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

18-8825946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825946
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825946
    reference: chr 18
allele count: 1813
allele frequency: 1.580039043435822e-2
allele num: 114744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2413G>A
  hgvsp: ENSP00000303670.7:p.Gly805Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4315G>A
  hgvsp: ENSP00000429556.1:p.Gly1439Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5395G>A
  hgvsp: ENSP00000305027.11:p.Gly1799Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4438G>A
  hgvsp: ENSP00000352927.3:p.Gly1480Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2413G>A
  hgvsp: ENSP00000463465.1:p.Gly805Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4315G>A
  hgvsp: ENSP00000382924.3:p.Gly1439Ser
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 23763
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 21905
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 158
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41609
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Gly1480Ser
num of homozygotes: 26
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

18-8825947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825947
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825947
    reference: chr 18
allele count: 1
allele frequency: 8.724176437744277e-6
allele num: 114624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2414G>T
  hgvsp: ENSP00000463465.1:p.Gly805Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5396G>T
  hgvsp: ENSP00000305027.11:p.Gly1799Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4316G>T
  hgvsp: ENSP00000429556.1:p.Gly1439Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4439G>T
  hgvsp: ENSP00000352927.3:p.Gly1480Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4316G>T
  hgvsp: ENSP00000382924.3:p.Gly1439Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2414G>T
  hgvsp: ENSP00000303670.7:p.Gly805Val
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1480Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

18-8825951-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825951
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825951
    reference: chr 18
allele count: 1
allele frequency: 8.734234706355028e-6
allele num: 114492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2418A>T
  hgvsp: ENST00000518815.1:c.2418A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2418A>T
  hgvsp: ENST00000306285.7:c.2418A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4320A>T
  hgvsp: ENST00000517570.1:c.4320A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5400A>T
  hgvsp: ENST00000306329.11:c.5400A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4320A>T
  hgvsp: ENST00000400050.3:c.4320A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4443A>T
  hgvsp: ENST00000359865.3:c.4443A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1481Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

18-8825953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825953
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825953
    reference: chr 18
allele count: 1
allele frequency: 8.7340821353084e-6
allele num: 114494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4322G>A
  hgvsp: ENSP00000429556.1:p.Gly1441Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4322G>A
  hgvsp: ENSP00000382924.3:p.Gly1441Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2420G>A
  hgvsp: ENSP00000303670.7:p.Gly807Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2420G>A
  hgvsp: ENSP00000463465.1:p.Gly807Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5402G>A
  hgvsp: ENSP00000305027.11:p.Gly1801Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4445G>A
  hgvsp: ENSP00000352927.3:p.Gly1482Asp
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly1482Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

18-8825962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825962
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825962
    reference: chr 18
allele count: 1
allele frequency: 8.755800717975658e-6
allele num: 114210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5411C>T
  hgvsp: ENSP00000305027.11:p.Thr1804Ile
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2429C>T
  hgvsp: ENSP00000463465.1:p.Thr810Ile
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4331C>T
  hgvsp: ENSP00000429556.1:p.Thr1444Ile
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2429C>T
  hgvsp: ENSP00000303670.7:p.Thr810Ile
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4331C>T
  hgvsp: ENSP00000382924.3:p.Thr1444Ile
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4454C>T
  hgvsp: ENSP00000352927.3:p.Thr1485Ile
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1485Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

18-8825969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825969
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825969
    reference: chr 18
allele count: 1
allele frequency: 8.78379565377791e-6
allele num: 113846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5418C>T
  hgvsp: ENST00000306329.11:c.5418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4461C>T
  hgvsp: ENST00000359865.3:c.4461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4338C>T
  hgvsp: ENST00000400050.3:c.4338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2436C>T
  hgvsp: ENST00000518815.1:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4338C>T
  hgvsp: ENST00000517570.1:c.4338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2436C>T
  hgvsp: ENST00000306285.7:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr1487Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

18-8825977-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825977
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825977
    reference: chr 18
allele count: 1
allele frequency: 8.840013436820424e-6
allele num: 113122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2444G>A
  hgvsp: ENSP00000303670.7:p.Arg815Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4469G>A
  hgvsp: ENSP00000352927.3:p.Arg1490Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2444G>A
  hgvsp: ENSP00000463465.1:p.Arg815Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4346G>A
  hgvsp: ENSP00000382924.3:p.Arg1449Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4346G>A
  hgvsp: ENSP00000429556.1:p.Arg1449Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5426G>A
  hgvsp: ENSP00000305027.11:p.Arg1809Gln
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1490Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

18-8825977-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825977
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825977
    reference: chr 18
allele count: 1
allele frequency: 8.840013436820424e-6
allele num: 113122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2444G>C
  hgvsp: ENSP00000463465.1:p.Arg815Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2444G>C
  hgvsp: ENSP00000303670.7:p.Arg815Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4346G>C
  hgvsp: ENSP00000382924.3:p.Arg1449Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5426G>C
  hgvsp: ENSP00000305027.11:p.Arg1809Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4469G>C
  hgvsp: ENSP00000352927.3:p.Arg1490Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4346G>C
  hgvsp: ENSP00000429556.1:p.Arg1449Pro
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1490Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

18-8825986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825986
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825986
    reference: chr 18
allele count: 1
allele frequency: 8.92188001855751e-6
allele num: 112084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4355C>T
  hgvsp: ENSP00000382924.3:p.Ser1452Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2453C>T
  hgvsp: ENSP00000463465.1:p.Ser818Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4478C>T
  hgvsp: ENSP00000352927.3:p.Ser1493Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2453C>T
  hgvsp: ENSP00000303670.7:p.Ser818Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4355C>T
  hgvsp: ENSP00000429556.1:p.Ser1452Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5435C>T
  hgvsp: ENSP00000305027.11:p.Ser1812Leu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6237
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1493Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

18-8825987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825987
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825987
    reference: chr 18
allele count: 2
allele frequency: 1.783580359213084e-5
allele num: 112134
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4479G>A
  hgvsp: ENST00000359865.3:c.4479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2454G>A
  hgvsp: ENST00000306285.7:c.2454G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4356G>A
  hgvsp: ENST00000517570.1:c.4356G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2454G>A
  hgvsp: ENST00000518815.1:c.2454G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4356G>A
  hgvsp: ENST00000400050.3:c.4356G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5436G>A
  hgvsp: ENST00000306329.11:c.5436G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19768
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1493Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

18-8825987-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825987
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825987
    reference: chr 18
allele count: 1
allele frequency: 8.917901796065422e-6
allele num: 112134
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4479G>T
  hgvsp: ENST00000359865.3:c.4479G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4356G>T
  hgvsp: ENST00000517570.1:c.4356G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2454G>T
  hgvsp: ENST00000306285.7:c.2454G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4356G>T
  hgvsp: ENST00000400050.3:c.4356G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2454G>T
  hgvsp: ENST00000518815.1:c.2454G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5436G>T
  hgvsp: ENST00000306329.11:c.5436G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser1493Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

18-8825993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8825993
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8825993
    reference: chr 18
allele count: 1
allele frequency: 8.976338372051273e-6
allele num: 111404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.5442C>T
  hgvsp: ENST00000306329.11:c.5442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.4362C>T
  hgvsp: ENST00000400050.3:c.4362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463465
  ensembl transcript: ENST00000518815
  gene symbol: SOGA2
  hgvsc: ENST00000518815.1:c.2460C>T
  hgvsp: ENST00000518815.1:c.2460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.2460C>T
  hgvsp: ENST00000306285.7:c.2460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.4362C>T
  hgvsp: ENST00000517570.1:c.4362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.4485C>T
  hgvsp: ENST00000359865.3:c.4485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1495Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.487561032318065e-4
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.470442e6

VQSLOD
type: SiteQuality
SIO_000300: -8.079e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.58e0

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 38894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521097624045511e-5
allele num: 65742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.236e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 1.468005e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.512e0

GenotypeQuality
all individuals: 1125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221896383186706e-4
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.464878e6

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: -2.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.838e1

QD
type: SiteQuality
SIO_000300: 7.42e0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.489737e6

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 1.175e0

QD
type: SiteQuality
SIO_000300: 1.253e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.306e0

GenotypeQuality
all individuals: 875
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-5
allele num: 65960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.343e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

FS
type: SiteQuality
SIO_000300: 5.116e0

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 1.491874e6

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2175e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.496727e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
all individuals: 788
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

VQSLOD
type: SiteQuality
SIO_000300: -1.724e0

FS
type: SiteQuality
SIO_000300: 1.43e1

DP
type: SiteQuality
SIO_000300: 1.497078e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 1.364e1

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 45112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.954652071931196e-4
allele num: 10232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

FS
type: SiteQuality
SIO_000300: 2.1552e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -2.318e0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

DP
type: SiteQuality
SIO_000300: 1.517081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 6376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.955034213098729e-4
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023431594860166e-5
allele num: 66150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.429e1

FS
type: SiteQuality
SIO_000300: 1.857e0

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.519864e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46458
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 4.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 1.527801e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 46752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.869e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.404e0

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 2.807e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.364e0

DP
type: SiteQuality
SIO_000300: 1.533527e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46862
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variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.839e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.795e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.389e1

DP
type: SiteQuality
SIO_000300: 1.53454e6

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6619
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 47670
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.704968944099378e-5
allele num: 10304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.545746e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.321e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 47695
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variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 517
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variant carriers: 0

GenotypeQuality
all individuals: 751
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variant carriers: 1

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

FS
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.546956e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47772
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 761
bin: 9.75e1
variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.503623733197005e-4
allele num: 66506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 1.550394e6

FS
type: SiteQuality
SIO_000300: 4.021e0

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.373e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 8.85e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 1.877e0

MQ
type: SiteQuality
SIO_000300: 5.744e1

DP
type: SiteQuality
SIO_000300: 1.550479e6

VQSLOD
type: SiteQuality
SIO_000300: -1.949e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 9.13e-1

DP
type: SiteQuality
SIO_000300: 1.553643e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.092e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.849e0

DP
type: SiteQuality
SIO_000300: 1.554807e6

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6599
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.359e0

DP
type: SiteQuality
SIO_000300: 1.554556e6

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.262e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.776999999999999e0

FS
type: SiteQuality
SIO_000300: 2.081e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 1.5545e6

MQRankSum
type: SiteQuality
SIO_000300: -5.15e0

MQ
type: SiteQuality
SIO_000300: 4.819e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 1.4101e1

VQSLOD
type: SiteQuality
SIO_000300: -7.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.244e0

DP
type: SiteQuality
SIO_000300: 1.554634e6

QD
type: SiteQuality
SIO_000300: 1.649e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.864e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 4.934e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1734
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GenotypeQuality
all individuals: 6593
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4078e1

QD
type: SiteQuality
SIO_000300: 2.53e0

VQSLOD
type: SiteQuality
SIO_000300: -4.178e0

MQRankSum
type: SiteQuality
SIO_000300: -5.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.898e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.554978e6

MQ
type: SiteQuality
SIO_000300: 4.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6583
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 7.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.383e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.564e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.555177e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48250
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.363e0

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 1.555212e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 48414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
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variant carriers: 0

GenotypeQuality
all individuals: 579
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variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

QD
type: SiteQuality
SIO_000300: 9.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

FS
type: SiteQuality
SIO_000300: 2.835e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.555551e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 2

African
type: Population
allele count: 101
allele frequency: 9.946818987591097e-3
allele num: 10154
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.555555555555556e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 311
allele frequency: 1.893570384802728e-2
allele num: 16424
num of homozygotes: 6

East Asian
type: Population
allele count: 76
allele frequency: 8.78409616273694e-3
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 369
allele frequency: 3.191489361702127e-2
allele num: 11562
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.206604368859109e-4
allele num: 66562
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.79e-2

FS
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.383e1

DP
type: SiteQuality
SIO_000300: 1.588913e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.93028e2

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e0

VQSLOD
type: SiteQuality
SIO_000300: -3.979e2

QD
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.518e0

DP
type: SiteQuality
SIO_000300: 1.5859e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

FS
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.58471e6

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
all individuals: 1164
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 1621
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 8.013999999999999e0

DP
type: SiteQuality
SIO_000300: 1.58338e6

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.202320478523551e-4
allele num: 66538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.245e1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

DP
type: SiteQuality
SIO_000300: 1.582771e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.089e0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48074
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.986886548778065e-4
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.089e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

DP
type: SiteQuality
SIO_000300: 1.582771e6

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 2

Other
type: Population
allele count: 6
allele frequency: 6.666666666666667e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.757477379986172e-4
allele num: 66534
num of homozygotes: 1

African
type: Population
allele count: 97
allele frequency: 9.628747270200516e-3
allele num: 10074
num of homozygotes: 1

South Asian
type: Population
allele count: 309
allele frequency: 1.888060613466944e-2
allele num: 16366
num of homozygotes: 8

Latino
type: Population
allele count: 365
allele frequency: 3.15689327106037e-2
allele num: 11562
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 78
allele frequency: 9.015256588072122e-3
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.58597e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.14e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.457814661134163e-4
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.555029e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.551962e6

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 5.211e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.75e1
variant carriers: 222

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.521511522955653e-5
allele num: 66476
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

African
type: Population
allele count: 211
allele frequency: 2.121455861652926e-2
allele num: 9946
num of homozygotes: 2

Latino
type: Population
allele count: 6
allele frequency: 5.189413596263622e-4
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 1.556394e6

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 6490
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.269558769002596e-4
allele num: 16182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.548575e6

QD
type: SiteQuality
SIO_000300: 1.287e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeQuality
all individuals: 1133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010144185906505e-5
allele num: 66442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.750999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.152e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.547254e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e-1

GenotypeQuality
all individuals: 1612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

QD
type: SiteQuality
SIO_000300: 6.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.543311e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.589e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

DP
type: SiteQuality
SIO_000300: 1.53943e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 154
bin: 3.75e1
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GenotypeQuality
all individuals: 522
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GenotypeQuality
all individuals: 6413
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.287e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

FS
type: SiteQuality
SIO_000300: 6.382e0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

DP
type: SiteQuality
SIO_000300: 1.536114e6

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46992
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.534218e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.53e-1

FS
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.63e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6214
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variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.016880211511084e-4
allele num: 9834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.508144e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 2895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
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variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52077376969402e-5
allele num: 65756
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.315886984715146e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14922
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.595e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

FS
type: SiteQuality
SIO_000300: 6.643e0

VQSLOD
type: SiteQuality
SIO_000300: -8.756e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

DP
type: SiteQuality
SIO_000300: 1.495196e6

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

GenotypeQuality
all individuals: 639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
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variant carriers: 0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
all individuals: 302
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variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14778
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.490906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: -7.415e-1

FS
type: SiteQuality
SIO_000300: 2.672e0

QD
type: SiteQuality
SIO_000300: 1.922e1

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 648
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1539
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GenotypeQuality
all individuals: 435
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.120124519318806e-4
allele num: 65532
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.064e1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

DP
type: SiteQuality
SIO_000300: 1.486424e6

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1089
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 316
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GenotypeQuality
all individuals: 42892
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.100536847242558e-5
allele num: 65568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.783754116355653e-3
allele num: 14576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.484697e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 1540
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.00770847932726e-5
allele num: 14270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.639419404125286e-5
allele num: 65450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.315886984715146e-4
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.47679e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 632
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GenotypeQuality
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GenotypeQuality
all individuals: 93
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GenotypeQuality
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GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 800
bin: 9.75e1
variant carriers: 58

GenotypeQuality
all individuals: 517
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.022704029453876e-4
allele num: 9778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528257480820369e-5
allele num: 65434
num of homozygotes: 0

East Asian
type: Population
allele count: 46
allele frequency: 5.326540064844835e-3
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.476447071093343e-4
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.20816383784542e-4
allele num: 14258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.476743e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
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GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 744
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GenotypeQuality
all individuals: 42273
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GenotypeQuality
all individuals: 622
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GenotypeQuality
all individuals: 1543
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GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529566520847992e-5
allele num: 65378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.082e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.471306e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 9.75e1
variant carriers: 23

East Asian
type: Population
allele count: 15
allele frequency: 1.738525730180807e-3
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.042900919305414e-4
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.190613320262239e-5
allele num: 65284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

DP
type: SiteQuality
SIO_000300: 1.470416e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42555
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.596714881098308e-5
allele num: 65264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13916
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022494887525562e-4
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

DP
type: SiteQuality
SIO_000300: 1.469963e6

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5982
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.067484662576687e-5
allele num: 65200
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 3.204e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.467176e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 2.555e1

GenotypeQuality
all individuals: 1556
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.471237310578196e-4
allele num: 13594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 2.753416275749541e-3
allele num: 9806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

DP
type: SiteQuality
SIO_000300: 1.466132e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42215
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540404818386272e-5
allele num: 64918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 9.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.649e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.348e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 5.866e1

DP
type: SiteQuality
SIO_000300: 1.460351e6

GenotypeQuality
all individuals: 5985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13190
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 1.46066e6

FS
type: SiteQuality
SIO_000300: 4.554e0

MQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
all individuals: 1568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540452276788465e-5
allele num: 64916
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 1.46066e6

FS
type: SiteQuality
SIO_000300: 4.554e0

MQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 1098
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 16
allele frequency: 1.633653257096181e-3
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.176470588235294e-3
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.078781901121933e-4
allele num: 64888
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.613240418118467e-4
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13136
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.043357291908185e-3
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.460315e6

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 1.324e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 42234
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.460315e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 1.324e1

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.484927687750479e-4
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.296e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 1.459534e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541544627716972e-5
allele num: 64870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 1.459534e6

QD
type: SiteQuality
SIO_000300: 1.296e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.79e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

GenotypeQuality
all individuals: 3930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.166178510867889e-5
allele num: 64870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.562011871290222e-4
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.296e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.79e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.459534e6

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2415
bin: 9.75e1
variant carriers: 1778

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3941
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 5680
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 69
allele frequency: 6.012547926106658e-3
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.01135833203672e-3
allele num: 12854
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 2.950152594099695e-3
allele num: 9830
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1603
allele frequency: 2.475369838475555e-2
allele num: 64758
num of homozygotes: 25

European (Finnish)
type: Population
allele count: 94
allele frequency: 1.476130653266332e-2
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.966587112171838e-3
allele num: 838
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.501376e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
all individuals: 845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.251e0

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.387e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 6.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 1.458196e6

GenotypeQuality
all individuals: 42798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5944
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

FS
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 1.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.457525e6

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.345e1

FS
type: SiteQuality
SIO_000300: 8.347e0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e0

DP
type: SiteQuality
SIO_000300: 1.457909e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: -2.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009693053311793e-4
allele num: 9904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 1.798e0

QD
type: SiteQuality
SIO_000300: 1.056e1

DP
type: SiteQuality
SIO_000300: 1.455722e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 5824
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555064846204087e-5
allele num: 64306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.341e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.749e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.449192e6

QD
type: SiteQuality
SIO_000300: 1.01e1

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5204
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563868384836732e-5
allele num: 63944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 1.432753e6

QD
type: SiteQuality
SIO_000300: 1.086e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 247
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.032128514056225e-5
allele num: 12450
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.086e1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

DP
type: SiteQuality
SIO_000300: 1.432753e6

FS
type: SiteQuality
SIO_000300: 6.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1732
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578133383833602e-5
allele num: 63366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.999e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 5.607e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.251e0

QD
type: SiteQuality
SIO_000300: 1.633e1

DP
type: SiteQuality
SIO_000300: 1.399074e6

GenotypeQuality
all individuals: 1592
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.046245140167792e-4
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

DP
type: SiteQuality
SIO_000300: 1.399262e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.185e1

GenotypeQuality
all individuals: 886
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5316
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578133383833602e-5
allele num: 63366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.399262e6

QD
type: SiteQuality
SIO_000300: 1.185e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3