X-41091631-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091631
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091631
    reference: chr 0
allele count: 1
allele frequency: 1.265390309641009e-5
allele num: 79027
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7576-9C>G
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7528-9C>G
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30027
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 570
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-41091647-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091647
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091647
    reference: chr 0
allele count: 1
allele frequency: 1.187521523827619e-5
allele num: 84209
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7583A>G
  hgvsp: ENSP00000316357.6:p.His2528Arg
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7535A>G
  hgvsp: ENSP00000367558.2:p.His2512Arg
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 1
hgvs: p.His2528Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9122
  num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-41091648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091648
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091648
    reference: chr 0
allele count: 5
allele frequency: 5.925574780753733e-5
allele num: 84380
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7584T>C
  hgvsp: ENST00000324545.8:c.7584T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7536T>C
  hgvsp: ENST00000378308.2:c.7536T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5542
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  variant carriers: 4
hgvs: p.His2528His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9189
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-41091653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091653
    reference: chr 0
allele count: 1
allele frequency: 1.175792778280756e-5
allele num: 85049
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7541A>G
  hgvsp: ENSP00000367558.2:p.His2514Arg
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7589A>G
  hgvsp: ENSP00000316357.6:p.His2530Arg
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His2530Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 609
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

X-41091654-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091654
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091654
    reference: chr 0
allele count: 2
allele frequency: 2.349541252070533e-5
allele num: 85123
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7542T>C
  hgvsp: ENST00000378308.2:c.7542T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7590T>C
  hgvsp: ENST00000324545.8:c.7590T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
hgvs: p.His2530His
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.298579319534894e-5
  allele num: 46527
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-41091707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091707
    reference: chr 0
allele count: 1
allele frequency: 1.147025762198619e-5
allele num: 87182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7595C>T
  hgvsp: ENSP00000367558.2:p.Thr2532Ile
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7643C>T
  hgvsp: ENSP00000316357.6:p.Thr2548Ile
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr2548Ile
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 628
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-41091711-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091711
    reference: chr 0
allele count: 1
allele frequency: 1.147012605668536e-5
allele num: 87183
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7599C>G
  hgvsp: ENST00000378308.2:c.7599C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7647C>G
  hgvsp: ENST00000324545.8:c.7647C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly2549Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8471
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-41091719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091719
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091719
    reference: chr 0
allele count: 11
allele frequency: 1.260802787520345e-4
allele num: 87246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7607C>T
  hgvsp: ENSP00000367558.2:p.Ala2536Val
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7655C>T
  hgvsp: ENSP00000316357.6:p.Ala2552Val
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala2552Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8474
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-41091730-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091730
    reference: chr 0
allele count: 4
allele frequency: 4.587208568905607e-5
allele num: 87199
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7666T>G
  hgvsp: ENSP00000316357.6:p.Tyr2556Asp
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7618T>G
  hgvsp: ENSP00000367558.2:p.Tyr2540Asp
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr2556Asp
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 629
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-41091731-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091731
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091731
    reference: chr 0
allele count: 1
allele frequency: 1.146999449440264e-5
allele num: 87184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7619A>G
  hgvsp: ENSP00000367558.2:p.Tyr2540Cys
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7667A>G
  hgvsp: ENSP00000316357.6:p.Tyr2556Cys
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr2556Cys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47730
  num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-41091732-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091732
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091732
    reference: chr 0
allele count: 1
allele frequency: 1.148211087126257e-5
allele num: 87092
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7668T>C
  hgvsp: ENST00000324545.8:c.7668T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7620T>C
  hgvsp: ENST00000378308.2:c.7620T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Tyr2556Tyr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9290
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-41091737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091737
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091737
    reference: chr 0
allele count: 1
allele frequency: 1.148237455505799e-5
allele num: 87090
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7673G>A
  hgvsp: ENSP00000316357.6:p.Gly2558Asp
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7625G>A
  hgvsp: ENSP00000367558.2:p.Gly2542Asp
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5393
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  variant carriers: 0
hgvs: p.Gly2558Asp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47712
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

X-41091754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091754
    reference: chr 0
allele count: 1
allele frequency: 1.155855564288687e-5
allele num: 86516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7642C>T
  hgvsp: ENSP00000367558.2:p.Pro2548Ser
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7690C>T
  hgvsp: ENSP00000316357.6:p.Pro2564Ser
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro2564Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9290
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-41091758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091758
    reference: chr 0
allele count: 1
allele frequency: 1.156323354262786e-5
allele num: 86481
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7646C>T
  hgvsp: ENSP00000367558.2:p.Pro2549Leu
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7694C>T
  hgvsp: ENSP00000316357.6:p.Pro2565Leu
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro2565Leu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8465
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-41091776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091776
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091776
    reference: chr 0
allele count: 2
allele frequency: 2.333613366937366e-5
allele num: 85704
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.7712G>A
  hgvsp: ENST00000324545.8:c.7712G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.7664G>A
  hgvsp: ENST00000378308.2:c.7664G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ter2571Ter
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4526
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

X-41091780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091780
    reference: chr 0
allele count: 1
allele frequency: 1.169440188981535e-5
allele num: 85511
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.*3T>C
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.*3T>C
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
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  allele num: 8783
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
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site quality: VQSLOD

X-41091780-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091780
    reference: chr 0
allele count: 1
allele frequency: 1.169440188981535e-5
allele num: 85511
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.*3T>G
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.*3T>G
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 615
  num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

X-41091789-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091789
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091789
    reference: chr 0
allele count: 1
allele frequency: 1.174356746092328e-5
allele num: 85153
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.*12T>G
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.*12T>G
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 608
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population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-41091799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091799
    reference: chr 0
allele count: 2
allele frequency: 2.363172322525759e-5
allele num: 84632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.*22C>T
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.*22C>T
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
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  allele num: 8258
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-41091807-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091807
    reference: chr 0
allele count: 1
allele frequency: 1.185311618424484e-5
allele num: 84366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.*30A>C
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.*30A>C
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
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genotype depth: GenotypeDepth
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population: African
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  allele num: 8303
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population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-41091816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041091816
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041091816
    reference: chr 0
allele count: 1
allele frequency: 1.195128655599775e-5
allele num: 83673
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000316357
  ensembl transcript: ENST00000324545
  gene symbol: USP9X
  hgvsc: ENST00000324545.8:c.*39C>T
  variant of: http://identifiers.org/hgnc/12632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124486
  ensembl protein: ENSP00000367558
  ensembl transcript: ENST00000378308
  gene symbol: USP9X
  hgvsc: ENST00000378308.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/12632
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
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genotype depth: GenotypeDepth
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  allele frequency: 0.0e0
  allele num: 4516
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
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X-41193455-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193457
    reference: chr 0
allele count: 1
allele frequency: 1.653029175964956e-5
allele num: 60495
alternate allele: CAA
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-49_-48dupAA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.807_808dupAA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-49_-48dupAA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.31_32dupAA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-49_-48dupAA
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15222
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5133
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

X-41193456-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193456
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193456
    reference: chr 0
allele count: 1
allele frequency: 1.645575869275453e-5
allele num: 60769
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-50A>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.30A>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-50A>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-50A>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.806A>C
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13054
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-41193457-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193457
    reference: chr 0
allele count: 4
allele frequency: 6.578730962797277e-5
allele num: 60802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-49A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.807A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-49A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.31A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-49A>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15215
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

X-41193459-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193460
    reference: chr 0
allele count: 1
allele frequency: 1.65000165000165e-5
allele num: 60606
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-46dupA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-46dupA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-46dupA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.810dupA
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.34dupA
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-41193459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193459
    reference: chr 0
allele count: 1
allele frequency: 1.65000165000165e-5
allele num: 60606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.33C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.809C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-41193460-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193460
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193460
    reference: chr 0
allele count: 1
allele frequency: 1.643385373870173e-5
allele num: 60850
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-46A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.810A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-46A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.34A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-46A>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15183
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3735
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-41193461-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193461
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193461
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 60754
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-45C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.35C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-45C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.811C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-45C>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18324
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14511
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-41193466-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193466
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193466
    reference: chr 0
allele count: 1178
allele frequency: 1.925812094361523e-2
allele num: 61169
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-40T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.816T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-40T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-40T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.40T>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14841
  bin: 1.25e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 2.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 2.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 7.5e0
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 1.75e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 1.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 16167
  bin: 2.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 4045
  bin: 2.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 9.75e1
  variant carriers: 825
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.75e1
  variant carriers: 8
num of homozygotes: 11
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

X-41193474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193474
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193474
    reference: chr 0
allele count: 1
allele frequency: 1.616971735334066e-5
allele num: 61844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.48G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.824G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3651
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-41193482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193482
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193482
    reference: chr 0
allele count: 1
allele frequency: 1.586520918278308e-5
allele num: 63031
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.56C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-24C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-24C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-24C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.832C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18919
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16139
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 650
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17113
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-41193493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193493
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193493
    reference: chr 0
allele count: 477
allele frequency: 7.263258873509661e-3
allele num: 65673
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.843G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.-13G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.67G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.-13G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.-13G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 20700
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 421
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  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 493
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genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 3
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-41193518-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193518
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193518
    reference: chr 0
allele count: 1
allele frequency: 1.408212696445671e-5
allele num: 71012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.13G>T
  hgvsp: ENSP00000382840.2:p.Ala5Ser
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.13G>T
  hgvsp: ENSP00000414281.2:p.Ala5Ser
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.868G>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.92G>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.13G>T
  hgvsp: ENSP00000392494.2:p.Ala5Ser
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala5Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-41193532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193532
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 71390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.106G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.27G>A
  hgvsp: ENST00000441189.2:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.27G>A
  hgvsp: ENST00000399959.2:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.27G>A
  hgvsp: ENST00000457138.2:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.882G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28000
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala9Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-41193544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193544
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193544
    reference: chr 0
allele count: 1
allele frequency: 1.405935861206012e-5
allele num: 71127
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.39C>T
  hgvsp: ENST00000441189.2:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.118C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.39C>T
  hgvsp: ENST00000399959.2:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.39C>T
  hgvsp: ENST00000457138.2:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.894C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp13Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-41193553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193553
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193553
    reference: chr 0
allele count: 1
allele frequency: 1.417514813029796e-5
allele num: 70546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+3G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+3G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+3G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+3G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+3G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1052
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  variant carriers: 0
hgvs: c.45+3G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-41193559-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193559
    reference: chr 0
allele count: 1
allele frequency: 1.426269022863092e-5
allele num: 70113
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+9C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+9C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+9C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+9C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+9C>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

X-41193562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193562
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193562
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 69839
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+12G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+12G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+12G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+12G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+12G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

X-41193566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193566
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193566
    reference: chr 0
allele count: 1
allele frequency: 1.43589449047284e-5
allele num: 69643
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+16C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+16C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+16C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+16C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+16C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-41193567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193567
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193567
    reference: chr 0
allele count: 1
allele frequency: 1.439532439863532e-5
allele num: 69467
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+17C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+17C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+17C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+17C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+17C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-41193569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193569
    reference: chr 0
allele count: 1
allele frequency: 1.44654997830175e-5
allele num: 69130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+19A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+19A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+19A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+19A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+19A>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

X-41193570-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193570
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 69199
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+20C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+20C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+20C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+20C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+20C>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

X-41193574-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193574
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193574
    reference: chr 0
allele count: 14
allele frequency: 2.055588999662296e-4
allele num: 68107
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+24G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+24G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+24G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+24G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+24G>C
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-41193582-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193582
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193582
    reference: chr 0
allele count: 3
allele frequency: 4.452227597874803e-5
allele num: 67382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+32C>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+32C>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+32C>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+32C>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+32C>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15614
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

X-41193583-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193583
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193583
    reference: chr 0
allele count: 1
allele frequency: 1.483789598634914e-5
allele num: 67395
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+33T>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+33T>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+33T>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+33T>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+33T>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-41193586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193586
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193586
    reference: chr 0
allele count: 2
allele frequency: 2.996120024568184e-5
allele num: 66753
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+36G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+36G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+36G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+36G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+36G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-41193588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193588
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193588
    reference: chr 0
allele count: 1
allele frequency: 1.501118333158203e-5
allele num: 66617
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+38G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+38G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+38G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+38G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+38G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17564
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-41193597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193597
    reference: chr 0
allele count: 1
allele frequency: 1.536074714674122e-5
allele num: 65101
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+47C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+47C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-41193598-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193598
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193596
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 63730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+49_124+50delCT
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+49_45+50delCT
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+49_900+50delCT
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+49_45+50delCT
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+49_45+50delCT
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 14262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16314
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6545
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: CCT
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-41193816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193816
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193816
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+266G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+266G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+266G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+266G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+266G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

X-41193852-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193852
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193852
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 617
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+302G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+302G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.7G>C
  hgvsp: ENSP00000439799.1:p.Glu3Gln
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+302G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+302G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+302G>C
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Glu3Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-41193866-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193866
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193866
    reference: chr 0
allele count: 1
allele frequency: 7.8064012490242e-4
allele num: 1281
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+316T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.21T>G
  hgvsp: ENSP00000439799.1:p.Ile7Met
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+316T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+316T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+316T>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+316T>G
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4211
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile7Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-41193872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193872
    reference: chr 0
allele count: 1
allele frequency: 6.25e-4
allele num: 1600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+322C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.27C>T
  hgvsp: ENST00000542215.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+322C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+322C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+322C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+322C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp9Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

X-41193874-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193874
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193875
    reference: chr 0
allele count: 2
allele frequency: 1.185536455245999e-3
allele num: 1687
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+331dupG
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+331dupG
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.36dupG
  hgvsp: ENSP00000439799.1:p.Phe13ValfsTer58
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+331dupG
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+331dupG
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+331dupG
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe13ValfsTer58
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

X-41193901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193901
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193901
    reference: chr 0
allele count: 1
allele frequency: 2.719608376393799e-4
allele num: 3677
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+351C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+351C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.56C>T
  hgvsp: ENSP00000439799.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+351C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+351C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+351C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 144
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 80
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala19Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

X-41193907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193907
    reference: chr 0
allele count: 1
allele frequency: 2.433682161109759e-4
allele num: 4109
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.62G>A
  hgvsp: ENSP00000439799.1:p.Gly21Glu
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+357G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+357G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+357G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+357G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+357G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
hgvs: p.Gly21Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS

X-41193914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193914
    reference: chr 0
allele count: 1
allele frequency: 2.248201438848921e-4
allele num: 4448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+364C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.69C>T
  hgvsp: ENST00000542215.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+364C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+364C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+364C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+364C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
hgvs: p.Asp23Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-41193920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193920
    reference: chr 0
allele count: 1
allele frequency: 2.153779883695886e-4
allele num: 4643
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+370G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+370G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+370G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+370G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.75G>A
  hgvsp: ENST00000542215.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+370G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg25Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-41193920-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193920
    reference: chr 0
allele count: 3
allele frequency: 6.461339651087659e-4
allele num: 4643
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.75G>T
  hgvsp: ENSP00000439799.1:p.Arg25Ser
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+370G>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+370G>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+370G>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+370G>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+370G>T
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg25Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

X-41193926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193926
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193926
    reference: chr 0
allele count: 4
allele frequency: 8.428150021070375e-4
allele num: 4746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+376T>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+376T>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+376T>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+376T>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+376T>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.81T>C
  hgvsp: ENST00000542215.1:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe27Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-41193956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193956
    reference: chr 0
allele count: 1
allele frequency: 2.352387673488591e-4
allele num: 4251
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+406G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+406G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+406G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.111G>A
  hgvsp: ENST00000542215.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+406G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+406G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Leu37Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-41193973-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193973
    reference: chr 0
allele count: 1
allele frequency: 2.620545073375262e-4
allele num: 3816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+423C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.128C>G
  hgvsp: ENSP00000439799.1:p.Pro43Arg
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+423C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+423C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+423C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+423C>G
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro43Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-41193985-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193985
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+435C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.140C>G
  hgvsp: ENSP00000439799.1:p.Pro47Arg
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+435C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+435C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+435C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+435C>G
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 204
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  variant carriers: 0
hgvs: p.Pro47Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-41193992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041193992
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041193992
    reference: chr 0
allele count: 2
allele frequency: 6.756756756756757e-4
allele num: 2960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+442C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+442C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.147C>T
  hgvsp: ENST00000542215.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+442C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+442C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+442C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
hgvs: p.Gly49Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

X-41194014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041194014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041194014
    reference: chr 0
allele count: 1
allele frequency: 5.035246727089627e-4
allele num: 1986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+464G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+464G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+464G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.169G>A
  hgvsp: ENSP00000439799.1:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+464G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+464G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu57Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-41194020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041194020
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041194020
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+470G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+470G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+470G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.175G>C
  hgvsp: ENSP00000439799.1:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+470G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+470G>C
  variant of: http://identifiers.org/hgnc/2745
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly59Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

X-41194036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041194036
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041194036
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+486C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+486C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+486C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.177+14C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+486C>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+486C>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

X-41194039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041194039
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041194039
    reference: chr 0
allele count: 1
allele frequency: 9.165902841429881e-4
allele num: 1091
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+489G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+489G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+489G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.177+17G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+489G>A
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+489G>A
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1696
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
  all individuals: 391
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genotype quality: GenotypeQuality
  all individuals: 78
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 4302
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genotype quality: GenotypeQuality
  all individuals: 152
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

X-41194051-GGGCGGCCTTCGCTCGGGGTAATGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041194051
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041194026
    reference: chr 0
allele count: 1
allele frequency: 1.400560224089636e-3
allele num: 714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: GGGCGGCCTTCGCTCGGGGTAATGGC
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-41194068-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041194068
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041194068
    reference: chr 0
allele count: 8
allele frequency: 2.826855123674912e-2
allele num: 283
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.124+518G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.45+518G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.45+518G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.45+518G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.177+46G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.900+518G>C
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

X-41196618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041196618
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041196618
    reference: chr 0
allele count: 1
allele frequency: 1.153203021391916e-5
allele num: 86715
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.901-43G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.125-43G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.46-43G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.46-43G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.178-43G>C
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.46-43G>C
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-41196625-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041196625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041196625
    reference: chr 0
allele count: 1
allele frequency: 1.152392366552964e-5
allele num: 86776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.46-36A>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.178-36A>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.125-36A>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.46-36A>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.901-36A>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.46-36A>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3094
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16934
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-41196628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041196628
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041196628
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.46-33A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.46-33A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.901-33A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.125-33A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.178-33A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.46-33A>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

X-41196642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041196642
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041196642
    reference: chr 0
allele count: 1
allele frequency: 1.150284695462127e-5
allele num: 86935
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.178-19C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.46-19C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.46-19C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.46-19C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.125-19C>T
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.901-19C>T
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16931
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

X-41196644-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24041196644
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24041196644
    reference: chr 0
allele count: 1
allele frequency: 1.150059803109762e-5
allele num: 86952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000478993
  gene symbol: DDX3X
  hgvsc: ENST00000478993.1:n.901-17A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000439799
  ensembl transcript: ENST00000542215
  gene symbol: DDX3X
  hgvsc: ENST00000542215.1:c.178-17A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000382840
  ensembl transcript: ENST00000399959
  gene symbol: DDX3X
  hgvsc: ENST00000399959.2:c.46-17A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000414281
  ensembl transcript: ENST00000441189
  gene symbol: DDX3X
  hgvsc: ENST00000441189.2:c.46-17A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl transcript: ENST00000480592
  gene symbol: DDX3X
  hgvsc: ENST00000480592.1:n.125-17A>G
  variant of: http://identifiers.org/hgnc/2745
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215301
  ensembl protein: ENSP00000392494
  ensembl transcript: ENST00000457138
  gene symbol: DDX3X
  hgvsc: ENST00000457138.2:c.46-17A>G
  variant of: http://identifiers.org/hgnc/2745
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16932
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6386
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43289
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.237011380504701e-4
allele num: 8084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.493117e6

FS
type: SiteQuality
SIO_000300: 1.725e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.922e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 2.497e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8339
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.172165866585572e-5
allele num: 46037
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.604219e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.475e1

African
type: Population
allele count: 5
allele frequency: 5.993048064245475e-4
allele num: 8343
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6509
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9131
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.60766e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

QD
type: SiteQuality
SIO_000300: 1.809e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8383
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.151370422959425e-5
allele num: 46482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6531
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.16e-2

MQ
type: SiteQuality
SIO_000300: 5.896e1

DP
type: SiteQuality
SIO_000300: 1.623278e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9427
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.797e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 4.079e0

DP
type: SiteQuality
SIO_000300: 1.625968e6

QD
type: SiteQuality
SIO_000300: 1.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.138e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9987
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47667
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.43e1

FS
type: SiteQuality
SIO_000300: 3.009e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.984e0

DP
type: SiteQuality
SIO_000300: 1.679298e6

MQRankSum
type: SiteQuality
SIO_000300: -1.126e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097843416967358e-5
allele num: 47668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.680453e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.62e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.443e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.521e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.095293969743955e-4
allele num: 47726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076658053402239e-4
allele num: 9288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9975
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.069e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

DP
type: SiteQuality
SIO_000300: 1.682488e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47736
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.034291477559253e-4
allele num: 9915
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 1.680706e6

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 3.818e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.164e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 2.182e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9907
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076310407921645e-4
allele num: 9291
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

FS
type: SiteQuality
SIO_000300: 1.529e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.680021e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096304215667778e-5
allele num: 47703
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.677385e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 3.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.168e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180498170227836e-4
allele num: 8471
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9837
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.234e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.678088e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

VQSLOD
type: SiteQuality
SIO_000300: -4.639e-1

QD
type: SiteQuality
SIO_000300: 9.24e0

MQ
type: SiteQuality
SIO_000300: 5.456e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9413
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102121040129491e-5
allele num: 47571
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.472e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.782e0

DP
type: SiteQuality
SIO_000300: 1.662561e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.103e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.065416577881952e-4
allele num: 9386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.661248e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.434e0

QD
type: SiteQuality
SIO_000300: 9.15e0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8877
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.155636990730761e-4
allele num: 9278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.316e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.199e1

FS
type: SiteQuality
SIO_000300: 2.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -8.260000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 1.635574e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47286
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.681e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.46e-1

FS
type: SiteQuality
SIO_000300: 2.192e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.627981e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.88e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.138563133325743e-4
allele num: 8783
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.066e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.192e0

VQSLOD
type: SiteQuality
SIO_000300: -4.88e-1

QD
type: SiteQuality
SIO_000300: 1.681e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 1.627981e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47190
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 5.76e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.61265e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.325e0

VQSLOD
type: SiteQuality
SIO_000300: -1.934e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47049
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.398656752218757e-4
allele num: 8338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.451e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

FS
type: SiteQuality
SIO_000300: 3.486e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

DP
type: SiteQuality
SIO_000300: 1.591949e6

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.127840667290833e-5
allele num: 46996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8087
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.448e0

QD
type: SiteQuality
SIO_000300: 1.004e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 6.344e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.102e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

DP
type: SiteQuality
SIO_000300: 1.572845e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6589
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7701
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46811
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.081782778018174e-4
allele num: 9244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8215
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.565e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.540699e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 1.915e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.69e-1

GenotypeQuality
all individuals: 472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12151
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.996703626011388e-5
allele num: 33370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5989
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 403
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2287
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.35384e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

MQ
type: SiteQuality
SIO_000300: 6.098e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.06e1

GenotypeQuality
all individuals: 3396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5162
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.986233463732195e-5
allele num: 33487
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5047
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6735
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.818e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

DP
type: SiteQuality
SIO_000300: 9.36911e5

QD
type: SiteQuality
SIO_000300: 1.597e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6007
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.978239366963402e-4
allele num: 5055
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.948812790836415e-5
allele num: 33524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2309
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6714
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.37945e5

QD
type: SiteQuality
SIO_000300: 1.648e1

GenotypeQuality
all individuals: 465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5127
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5047
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.989536621823617e-5
allele num: 33450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6675
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.183e0

QD
type: SiteQuality
SIO_000300: 8.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 9.41349e5

MQ
type: SiteQuality
SIO_000300: 6.107e1

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeQuality
all individuals: 3317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.989536621823617e-5
allele num: 33450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5047
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6675
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQ
type: SiteQuality
SIO_000300: 6.107e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 8.15e0

DP
type: SiteQuality
SIO_000300: 9.41349e5

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6796
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.973554371422933e-4
allele num: 5067
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6003
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2309
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.452e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

DP
type: SiteQuality
SIO_000300: 9.43835e5

VQSLOD
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

GenotypeQuality
all individuals: 6343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2303
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5049
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5991
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.46284e5

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.234e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.778e1

GenotypeQuality
all individuals: 757
bin: 5.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1802
bin: 4.25e1
variant carriers: 27

GenotypeQuality
all individuals: 4764
bin: 3.75e1
variant carriers: 82

GenotypeQuality
all individuals: 6015
bin: 3.25e1
variant carriers: 105

GenotypeQuality
all individuals: 454
bin: 8.25e1
variant carriers: 6

Other
type: Population
allele count: 3
allele frequency: 7.444168734491315e-3
allele num: 403
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 60
allele frequency: 2.586206896551724e-2
allele num: 2320
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 3.821232762917428e-3
allele num: 6019
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1002
allele frequency: 2.969064833471613e-2
allele num: 33748
num of homozygotes: 10

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

Latino
type: Population
allele count: 61
allele frequency: 9.011670852415424e-3
allele num: 6769
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 4.248461763844125e-3
allele num: 6826
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

QD
type: SiteQuality
SIO_000300: 1.729e1

FS
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.563e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.781e1

DP
type: SiteQuality
SIO_000300: 9.71513e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
all individuals: 3159
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2371
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6895
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.642305797339465e-4
allele num: 6089
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5107
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 1.011884e6

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.56e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeQuality
all individuals: 245
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3485
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7035
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5213
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.875380987980907e-5
allele num: 34778
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

QD
type: SiteQuality
SIO_000300: 2.441e1

VQSLOD
type: SiteQuality
SIO_000300: -1.796e0

FS
type: SiteQuality
SIO_000300: 1.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.263e0

DP
type: SiteQuality
SIO_000300: 1.0564e6

GenotypeQuality
all individuals: 1550
bin: 3.75e1
variant carriers: 20

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 22

GenotypeQuality
all individuals: 2338
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3449
bin: 9.75e1
variant carriers: 338

European (Non-Finnish)
type: Population
allele count: 420
allele frequency: 1.158492855960722e-2
allele num: 36254
num of homozygotes: 2

Other
type: Population
allele count: 3
allele frequency: 6.84931506849315e-3
allele num: 438
num of homozygotes: 1

African
type: Population
allele count: 5
allele frequency: 7.866582756450598e-4
allele num: 6356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.35685210312076e-3
allele num: 7370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 8.62406899255194e-3
allele num: 2551
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 2.339020363236103e-3
allele num: 7268
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.455e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.152e-1

DP
type: SiteQuality
SIO_000300: 1.132157e6

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 1.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeQuality
all individuals: 308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 818
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 469
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2779
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5813
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39315
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.257229067136032e-4
allele num: 7954
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 8.933999999999999e0

DP
type: SiteQuality
SIO_000300: 1.238741e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.314e0

QD
type: SiteQuality
SIO_000300: 2.439e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.759e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2815
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6789
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7953
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.811e1

DP
type: SiteQuality
SIO_000300: 1.236433e6

VQSLOD
type: SiteQuality
SIO_000300: -1.961e0

QD
type: SiteQuality
SIO_000300: 2.561e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.542782312406235e-5
allele num: 39327
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5825
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7933
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2789
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 1.22219e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

GenotypeQuality
all individuals: 429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 715
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variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 469
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.489868891537545e-4
allele num: 6712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2771
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 1.279e0

VQSLOD
type: SiteQuality
SIO_000300: -8.323e-1

QD
type: SiteQuality
SIO_000300: 1.891e1

DP
type: SiteQuality
SIO_000300: 1.19482e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5743
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6687
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.580511973575557e-5
allele num: 38752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7785
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.253e-1

DP
type: SiteQuality
SIO_000300: 1.174249e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.537e1

GenotypeQuality
all individuals: 1426
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2336
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 225
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 469
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2708
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.155444e6

QD
type: SiteQuality
SIO_000300: 2.229e1

MQ
type: SiteQuality
SIO_000300: 5.852e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.179e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 4.163e0

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.751620248730075e-4
allele num: 5709
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2693
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 465
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.238e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.142037e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

GenotypeQuality
all individuals: 569
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 463
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7709
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2679
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5677
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265342275085411e-4
allele num: 7903
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.13368e6

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.09e1

VQSLOD
type: SiteQuality
SIO_000300: -2.111e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.61e-1

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 1984
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GenotypeQuality
all individuals: 658
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variant carriers: 0

GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
all individuals: 17906
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.616568109267884e-5
allele num: 38218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7681
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.434e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

FS
type: SiteQuality
SIO_000300: 7.314e0

MQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

DP
type: SiteQuality
SIO_000300: 1.119481e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3128
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7671
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38268
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

DP
type: SiteQuality
SIO_000300: 1.114732e6

GenotypeQuality
all individuals: 1634
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 3.722909187608031e-4
allele num: 37605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7561
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2569
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 451
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.454e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.079652e6

FS
type: SiteQuality
SIO_000300: 2.325e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5559
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.613964933866503e-4
allele num: 6502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7661
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37183
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 453
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.969e0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 1.046622e6

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 3128
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.335648457326032e-4
allele num: 7487
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37197
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.04135e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 5.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1215
bin: 4.75e1
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GenotypeQuality
all individuals: 1759
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36823
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 451
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.090712409210323e-4
allele num: 6471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2477
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

DP
type: SiteQuality
SIO_000300: 1.029514e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7413
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European (Non-Finnish)
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allele frequency: 2.721977244270238e-5
allele num: 36738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
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ClippingRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5353
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

Latino
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allele frequency: 1.384466288245881e-4
allele num: 7223
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 35875
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.99302e5

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -8.9e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5251
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35074
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 422
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 6250
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2351
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South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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FS
type: SiteQuality
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
type: Population
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allele frequency: NaN
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.05e-2

DP
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QD
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FS
type: SiteQuality
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Other
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allele count: 0
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allele num: 12
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.917e1

MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 729
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.0e-2
allele num: 50
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 1.058201058201058e-3
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
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QD
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VQSLOD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Latino
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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Latino
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Other
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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Other
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Latino
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QD
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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Latino
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Other
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East Asian
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Latino
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European (Non-Finnish)
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FS
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
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South Asian
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allele frequency: 1.029512697323267e-3
allele num: 2914
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1426
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.535795026375283e-4
allele num: 1327
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
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South Asian
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VQSLOD
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MQ
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FS
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1198
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South Asian
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QD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 0
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VQSLOD
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DP
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QD
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FS
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 954
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African
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South Asian
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
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Other
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Latino
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Other
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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InbreedingCoeff
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FS
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DP
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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FS
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VQSLOD
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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European (Finnish)
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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QD
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2
bin: 6.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.395604395604396e-2
allele num: 91
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.882352941176471e-2
allele num: 17
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.083333333333333e-2
allele num: 144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.801e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.3603e4

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16935
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 3.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7907
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47807
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.002405773857257e-4
allele num: 9976
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 2.307026e6

QD
type: SiteQuality
SIO_000300: 2.878e1

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090388394163635e-5
allele num: 47838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9989
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 2.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -2.635e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.36e-2

DP
type: SiteQuality
SIO_000300: 2.321603e6

GenotypeQuality
all individuals: 23445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16936
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 2.32765e6

QD
type: SiteQuality
SIO_000300: 3.5e0

VQSLOD
type: SiteQuality
SIO_000300: -2.694e0

GenotypeQuality
all individuals: 270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086854900978735e-5
allele num: 47919
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7917
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 2.342745e6

QD
type: SiteQuality
SIO_000300: 1.255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

FS
type: SiteQuality
SIO_000300: 3.492e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47929
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7917
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10039
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.20799293442261e-4
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.579e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.37e-2