18-8784563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784563
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784563
    reference: chr 18
allele count: 11
allele frequency: 9.613535858488752e-5
allele num: 114422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2533C>T
  hgvsp: ENSP00000305027.11:p.Arg845Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1453C>T
  hgvsp: ENSP00000382924.3:p.Arg485Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-603C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1453C>T
  hgvsp: ENSP00000429556.1:p.Arg485Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.979C>T
  hgvsp: ENSP00000463438.1:p.Arg327Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1453C>T
  hgvsp: ENSP00000352927.3:p.Arg485Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.25C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8270
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg485Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

18-8784564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784564
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784564
    reference: chr 18
allele count: 1
allele frequency: 8.718699867475763e-6
allele num: 114696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1454G>A
  hgvsp: ENSP00000352927.3:p.Arg485Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1454G>A
  hgvsp: ENSP00000382924.3:p.Arg485Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.26G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.980G>A
  hgvsp: ENSP00000463438.1:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1454G>A
  hgvsp: ENSP00000429556.1:p.Arg485Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2534G>A
  hgvsp: ENSP00000305027.11:p.Arg845Gln
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-602G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11066
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg485Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

18-8784567-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784567
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784567
    reference: chr 18
allele count: 92
allele frequency: 8.007101951295932e-4
allele num: 114898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1457G>C
  hgvsp: ENSP00000382924.3:p.Gly486Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1457G>C
  hgvsp: ENSP00000429556.1:p.Gly486Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.29G>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1457G>C
  hgvsp: ENSP00000352927.3:p.Gly486Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2537G>C
  hgvsp: ENSP00000305027.11:p.Gly846Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-599G>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.983G>C
  hgvsp: ENSP00000463438.1:p.Gly328Ala
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 9.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly486Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

18-8784573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784573
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784573
    reference: chr 18
allele count: 2
allele frequency: 1.739675028704638e-5
allele num: 114964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2543C>G
  hgvsp: ENSP00000305027.11:p.Ala848Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.35C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.989C>G
  hgvsp: ENSP00000463438.1:p.Ala330Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1463C>G
  hgvsp: ENSP00000429556.1:p.Ala488Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1463C>G
  hgvsp: ENSP00000352927.3:p.Ala488Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1463C>G
  hgvsp: ENSP00000382924.3:p.Ala488Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-593C>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37709
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala488Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

18-8784573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784573
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784573
    reference: chr 18
allele count: 11
allele frequency: 9.568212657875508e-5
allele num: 114964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.989C>T
  hgvsp: ENSP00000463438.1:p.Ala330Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-593C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2543C>T
  hgvsp: ENSP00000305027.11:p.Ala848Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1463C>T
  hgvsp: ENSP00000429556.1:p.Ala488Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1463C>T
  hgvsp: ENSP00000382924.3:p.Ala488Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1463C>T
  hgvsp: ENSP00000352927.3:p.Ala488Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.35C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala488Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

18-8784574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784574
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784574
    reference: chr 18
allele count: 125
allele frequency: 1.084937594389571e-3
allele num: 115214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1464G>A
  hgvsp: ENST00000359865.3:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.990G>A
  hgvsp: ENST00000520495.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2544G>A
  hgvsp: ENST00000306329.11:c.2544G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1464G>A
  hgvsp: ENST00000517570.1:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1464G>A
  hgvsp: ENST00000400050.3:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-592G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.36G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11110
  bin: 9.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala488Ala
num of homozygotes: 1
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

18-8784582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784582
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784582
    reference: chr 18
allele count: 7
allele frequency: 6.047098256707959e-5
allele num: 115758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2552C>T
  hgvsp: ENSP00000305027.11:p.Pro851Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.44C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1472C>T
  hgvsp: ENSP00000352927.3:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1472C>T
  hgvsp: ENSP00000382924.3:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.998C>T
  hgvsp: ENSP00000463438.1:p.Pro333Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-584C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1472C>T
  hgvsp: ENSP00000429556.1:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro491Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

18-8784583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784583
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784583
    reference: chr 18
allele count: 16
allele frequency: 1.379928933659916e-4
allele num: 115948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1473G>A
  hgvsp: ENST00000517570.1:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.45G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1473G>A
  hgvsp: ENST00000359865.3:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2553G>A
  hgvsp: ENST00000306329.11:c.2553G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1473G>A
  hgvsp: ENST00000400050.3:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-583G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.999G>A
  hgvsp: ENST00000520495.1:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro491Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

18-8784585-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784585
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784585
    reference: chr 18
allele count: 1
allele frequency: 8.605111436193099e-6
allele num: 116210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1475G>A
  hgvsp: ENSP00000429556.1:p.Gly492Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1001G>A
  hgvsp: ENSP00000463438.1:p.Gly334Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-581G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2555G>A
  hgvsp: ENSP00000305027.11:p.Gly852Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.47G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1475G>A
  hgvsp: ENSP00000352927.3:p.Gly492Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1475G>A
  hgvsp: ENSP00000382924.3:p.Gly492Glu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly492Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

18-8784586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784586
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784586
    reference: chr 18
allele count: 1
allele frequency: 8.604371020478403e-6
allele num: 116220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2556G>A
  hgvsp: ENST00000306329.11:c.2556G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1476G>A
  hgvsp: ENST00000400050.3:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-580G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1476G>A
  hgvsp: ENST00000359865.3:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.48G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1476G>A
  hgvsp: ENST00000517570.1:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1002G>A
  hgvsp: ENST00000520495.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37656
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly492Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

18-8784587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784587
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784587
    reference: chr 18
allele count: 2
allele frequency: 1.719956657092241e-5
allele num: 116282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1477C>T
  hgvsp: ENSP00000382924.3:p.Pro493Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1477C>T
  hgvsp: ENSP00000352927.3:p.Pro493Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1477C>T
  hgvsp: ENSP00000429556.1:p.Pro493Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1003C>T
  hgvsp: ENSP00000463438.1:p.Pro335Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2557C>T
  hgvsp: ENSP00000305027.11:p.Pro853Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.49C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-579C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37655
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro493Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

18-8784588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784588
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784588
    reference: chr 18
allele count: 1
allele frequency: 8.590327291469806e-6
allele num: 116410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2558C>T
  hgvsp: ENSP00000305027.11:p.Pro853Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1478C>T
  hgvsp: ENSP00000429556.1:p.Pro493Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1478C>T
  hgvsp: ENSP00000352927.3:p.Pro493Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1478C>T
  hgvsp: ENSP00000382924.3:p.Pro493Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1004C>T
  hgvsp: ENSP00000463438.1:p.Pro335Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-578C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.50C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro493Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

18-8784593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784593
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784593
    reference: chr 18
allele count: 2
allele frequency: 1.712152861007431e-5
allele num: 116812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2563C>T
  hgvsp: ENSP00000305027.11:p.Leu855Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1009C>T
  hgvsp: ENSP00000463438.1:p.Leu337Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1483C>T
  hgvsp: ENSP00000429556.1:p.Leu495Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1483C>T
  hgvsp: ENSP00000382924.3:p.Leu495Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1483C>T
  hgvsp: ENSP00000352927.3:p.Leu495Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-573C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.55C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11014
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu495Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

18-8784599-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784599
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784599
    reference: chr 18
allele count: 1
allele frequency: 8.523986498005388e-6
allele num: 117316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1489G>T
  hgvsp: ENSP00000429556.1:p.Gly497Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.61G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1489G>T
  hgvsp: ENSP00000382924.3:p.Gly497Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1489G>T
  hgvsp: ENSP00000352927.3:p.Gly497Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1015G>T
  hgvsp: ENSP00000463438.1:p.Gly339Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2569G>T
  hgvsp: ENSP00000305027.11:p.Gly857Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-567G>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37652
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly497Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

18-8784601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784601
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784601
    reference: chr 18
allele count: 16
allele frequency: 1.363419455995637e-4
allele num: 117352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1491C>T
  hgvsp: ENST00000517570.1:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2571C>T
  hgvsp: ENST00000306329.11:c.2571C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1491C>T
  hgvsp: ENST00000359865.3:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1017C>T
  hgvsp: ENST00000520495.1:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-565C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.63C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1491C>T
  hgvsp: ENST00000400050.3:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly497Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

18-8784602-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784602
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784602
    reference: chr 18
allele count: 4
allele frequency: 3.398239711829273e-5
allele num: 117708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2572G>A
  hgvsp: ENSP00000305027.11:p.Glu858Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1018G>A
  hgvsp: ENSP00000463438.1:p.Glu340Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-564G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1492G>A
  hgvsp: ENSP00000352927.3:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.64G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1492G>A
  hgvsp: ENSP00000429556.1:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1492G>A
  hgvsp: ENSP00000382924.3:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37651
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu498Lys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

18-8784611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784611
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784611
    reference: chr 18
allele count: 5
allele frequency: 4.22754329004329e-5
allele num: 118272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1501C>T
  hgvsp: ENSP00000352927.3:p.Gln501Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2581C>T
  hgvsp: ENSP00000305027.11:p.Gln861Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1501C>T
  hgvsp: ENSP00000382924.3:p.Gln501Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1501C>T
  hgvsp: ENSP00000429556.1:p.Gln501Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-555C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1027C>T
  hgvsp: ENSP00000463438.1:p.Gln343Ter
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.73C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37653
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln501Ter
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

18-8784612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784612
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784612
    reference: chr 18
allele count: 44236
allele frequency: 3.700766321989091e-1
allele num: 119532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1502A>G
  hgvsp: ENSP00000352927.3:p.Gln501Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1502A>G
  hgvsp: ENSP00000429556.1:p.Gln501Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-554A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2582A>G
  hgvsp: ENSP00000305027.11:p.Gln861Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1502A>G
  hgvsp: ENSP00000382924.3:p.Gln501Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1028A>G
  hgvsp: ENSP00000463438.1:p.Gln343Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.74A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 516
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 4.25e1
  variant carriers: 778
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 8.25e1
  variant carriers: 2326
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.25e1
  variant carriers: 1044
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 9.75e1
  variant carriers: 11715
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.75e1
  variant carriers: 835
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 5.75e1
  variant carriers: 1163
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.25e1
  variant carriers: 1033
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 8.75e1
  variant carriers: 2273
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 2.75e1
  variant carriers: 1210
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 1296
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 909
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 7.75e1
  variant carriers: 2265
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 9.25e1
  variant carriers: 2161
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.75e1
  variant carriers: 1705
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 6.25e1
  variant carriers: 1387
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.25e1
  variant carriers: 2066
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 806
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.75e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 11
hgvs: p.Gln501Arg
num of homozygotes: 8774
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

18-8784619-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784619
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784619
    reference: chr 18
allele count: 2
allele frequency: 1.668669069550127e-5
allele num: 119856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1035G>C
  hgvsp: ENSP00000463438.1:p.Glu345Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1509G>C
  hgvsp: ENSP00000352927.3:p.Glu503Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1509G>C
  hgvsp: ENSP00000429556.1:p.Glu503Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2589G>C
  hgvsp: ENSP00000305027.11:p.Glu863Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-547G>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1509G>C
  hgvsp: ENSP00000382924.3:p.Glu503Asp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.81G>C
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu503Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/18-8784639-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784639
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784639
    reference: chr 18
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1529A>C
  hgvsp: ENSP00000352927.3:p.Gln510Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.101A>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1529A>C
  hgvsp: ENSP00000429556.1:p.Gln510Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1055A>C
  hgvsp: ENSP00000463438.1:p.Gln352Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1529A>C
  hgvsp: ENSP00000382924.3:p.Gln510Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2609A>C
  hgvsp: ENSP00000305027.11:p.Gln870Pro
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-527A>C
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15712
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln510Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

18-8784647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784647
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784647
    reference: chr 18
allele count: 4
allele frequency: 3.319061369444721e-5
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1537G>A
  hgvsp: ENSP00000352927.3:p.Gly513Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-519G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2617G>A
  hgvsp: ENSP00000305027.11:p.Gly873Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1537G>A
  hgvsp: ENSP00000429556.1:p.Gly513Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1063G>A
  hgvsp: ENSP00000463438.1:p.Gly355Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1537G>A
  hgvsp: ENSP00000382924.3:p.Gly513Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.109G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly513Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

18-8784653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784653
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784653
    reference: chr 18
allele count: 1
allele frequency: 8.290224167661493e-6
allele num: 120624
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1543A>G
  hgvsp: ENSP00000352927.3:p.Ile515Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1543A>G
  hgvsp: ENSP00000429556.1:p.Ile515Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2623A>G
  hgvsp: ENSP00000305027.11:p.Ile875Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1069A>G
  hgvsp: ENSP00000463438.1:p.Ile357Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1543A>G
  hgvsp: ENSP00000382924.3:p.Ile515Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.115A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-513A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile515Val
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

18-8784654-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784654
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784654
    reference: chr 18
allele count: 2
allele frequency: 1.657989853102099e-5
allele num: 120628
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1544T>C
  hgvsp: ENSP00000352927.3:p.Ile515Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-512T>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1070T>C
  hgvsp: ENSP00000463438.1:p.Ile357Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1544T>C
  hgvsp: ENSP00000429556.1:p.Ile515Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.116T>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2624T>C
  hgvsp: ENSP00000305027.11:p.Ile875Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1544T>C
  hgvsp: ENSP00000382924.3:p.Ile515Thr
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15711
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile515Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

18-8784655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784655
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784655
    reference: chr 18
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2625C>T
  hgvsp: ENST00000306329.11:c.2625C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1545C>T
  hgvsp: ENST00000400050.3:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1071C>T
  hgvsp: ENST00000520495.1:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1545C>T
  hgvsp: ENST00000359865.3:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1545C>T
  hgvsp: ENST00000517570.1:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-511C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.117C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile515Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

18-8784657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784657
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784657
    reference: chr 18
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2627A>G
  hgvsp: ENSP00000305027.11:p.Asn876Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1073A>G
  hgvsp: ENSP00000463438.1:p.Asn358Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1547A>G
  hgvsp: ENSP00000429556.1:p.Asn516Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1547A>G
  hgvsp: ENSP00000382924.3:p.Asn516Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-509A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1547A>G
  hgvsp: ENSP00000352927.3:p.Asn516Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.119A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.2A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn516Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

18-8784658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784658
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784658
    reference: chr 18
allele count: 14
allele frequency: 1.160015908789606e-4
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1074C>T
  hgvsp: ENST00000520495.1:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1548C>T
  hgvsp: ENST00000359865.3:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1548C>T
  hgvsp: ENST00000517570.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2628C>T
  hgvsp: ENST00000306329.11:c.2628C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1548C>T
  hgvsp: ENST00000400050.3:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.3C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-508C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.120C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15710
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn516Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

18-8784659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784659
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784659
    reference: chr 18
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2629G>A
  hgvsp: ENSP00000305027.11:p.Ala877Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.121G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1549G>A
  hgvsp: ENSP00000429556.1:p.Ala517Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1549G>A
  hgvsp: ENSP00000352927.3:p.Ala517Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1075G>A
  hgvsp: ENSP00000463438.1:p.Ala359Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1549G>A
  hgvsp: ENSP00000382924.3:p.Ala517Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-507G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.4G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8442
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala517Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

18-8784662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784662
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784662
    reference: chr 18
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1552A>G
  hgvsp: ENSP00000352927.3:p.Lys518Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1078A>G
  hgvsp: ENSP00000463438.1:p.Lys360Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.124A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1552A>G
  hgvsp: ENSP00000382924.3:p.Lys518Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.7A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2632A>G
  hgvsp: ENSP00000305027.11:p.Lys878Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-504A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1552A>G
  hgvsp: ENSP00000429556.1:p.Lys518Glu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys518Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

18-8784665-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784665
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784665
    reference: chr 18
allele count: 408
allele frequency: 3.375359872927628e-3
allele num: 120876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2635A>G
  hgvsp: ENSP00000305027.11:p.Met879Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1081A>G
  hgvsp: ENSP00000463438.1:p.Met361Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1555A>G
  hgvsp: ENSP00000352927.3:p.Met519Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.127A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.10A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1555A>G
  hgvsp: ENSP00000429556.1:p.Met519Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-501A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1555A>G
  hgvsp: ENSP00000382924.3:p.Met519Val
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 18813
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 9.75e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met519Val
num of homozygotes: 7
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

18-8784670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784670
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784670
    reference: chr 18
allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.15G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1086G>A
  hgvsp: ENST00000520495.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1560G>A
  hgvsp: ENST00000517570.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1560G>A
  hgvsp: ENST00000400050.3:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2640G>A
  hgvsp: ENST00000306329.11:c.2640G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1560G>A
  hgvsp: ENST00000359865.3:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.132G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-496G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys520Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

18-8784671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784671
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784671
    reference: chr 18
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-495G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1561G>A
  hgvsp: ENSP00000429556.1:p.Ala521Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.133G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1087G>A
  hgvsp: ENSP00000463438.1:p.Ala363Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1561G>A
  hgvsp: ENSP00000382924.3:p.Ala521Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.16G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2641G>A
  hgvsp: ENSP00000305027.11:p.Ala881Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1561G>A
  hgvsp: ENSP00000352927.3:p.Ala521Thr
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15507
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26336
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala521Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

18-8784672-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784672
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784672
    reference: chr 18
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1088C>G
  hgvsp: ENSP00000463438.1:p.Ala363Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1562C>G
  hgvsp: ENSP00000352927.3:p.Ala521Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1562C>G
  hgvsp: ENSP00000382924.3:p.Ala521Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.17C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-494C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1562C>G
  hgvsp: ENSP00000429556.1:p.Ala521Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2642C>G
  hgvsp: ENSP00000305027.11:p.Ala881Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.1C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.134C>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala521Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

18-8784678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784678
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784678
    reference: chr 18
allele count: 2
allele frequency: 1.652209830648492e-5
allele num: 121050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.140A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.7A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1568A>G
  hgvsp: ENSP00000429556.1:p.Lys523Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1094A>G
  hgvsp: ENSP00000463438.1:p.Lys365Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1568A>G
  hgvsp: ENSP00000382924.3:p.Lys523Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-488A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1568A>G
  hgvsp: ENSP00000352927.3:p.Lys523Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2648A>G
  hgvsp: ENSP00000305027.11:p.Lys883Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.23A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15507
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26462
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys523Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

18-8784681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784681
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784681
    reference: chr 18
allele count: 11
allele frequency: 9.085352759469415e-5
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1571A>G
  hgvsp: ENSP00000352927.3:p.Lys524Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.26A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1571A>G
  hgvsp: ENSP00000429556.1:p.Lys524Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2651A>G
  hgvsp: ENSP00000305027.11:p.Lys884Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1097A>G
  hgvsp: ENSP00000463438.1:p.Lys366Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1571A>G
  hgvsp: ENSP00000382924.3:p.Lys524Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.143A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-485A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.10A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys524Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

18-8784682-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784682
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784682
    reference: chr 18
allele count: 2
allele frequency: 1.651718613217052e-5
allele num: 121086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1098A>G
  hgvsp: ENST00000520495.1:c.1098A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1572A>G
  hgvsp: ENST00000400050.3:c.1572A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.11A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2652A>G
  hgvsp: ENST00000306329.11:c.2652A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1572A>G
  hgvsp: ENST00000359865.3:c.1572A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.27A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-484A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1572A>G
  hgvsp: ENST00000517570.1:c.1572A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.144A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys524Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

18-8784686-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784686
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784686
    reference: chr 18
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.148C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.15C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2656C>G
  hgvsp: ENSP00000305027.11:p.Leu886Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1576C>G
  hgvsp: ENSP00000429556.1:p.Leu526Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1576C>G
  hgvsp: ENSP00000352927.3:p.Leu526Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1576C>G
  hgvsp: ENSP00000382924.3:p.Leu526Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-480C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1102C>G
  hgvsp: ENSP00000463438.1:p.Leu368Val
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.31C>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu526Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

18-8784697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784697
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784697
    reference: chr 18
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1113C>T
  hgvsp: ENST00000520495.1:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1587C>T
  hgvsp: ENST00000400050.3:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1587C>T
  hgvsp: ENST00000359865.3:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.26C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1587C>T
  hgvsp: ENST00000517570.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.42C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2667C>T
  hgvsp: ENST00000306329.11:c.2667C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-469C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.159C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe529Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

18-8784701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784701
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784701
    reference: chr 18
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1591G>A
  hgvsp: ENSP00000352927.3:p.Glu531Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2671G>A
  hgvsp: ENSP00000305027.11:p.Glu891Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1591G>A
  hgvsp: ENSP00000382924.3:p.Glu531Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1591G>A
  hgvsp: ENSP00000429556.1:p.Glu531Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1117G>A
  hgvsp: ENSP00000463438.1:p.Glu373Lys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.30G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-465G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.163G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.46G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8578
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26645
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu531Lys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

18-8784705-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784705
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784705
    reference: chr 18
allele count: 10
allele frequency: 8.248919391559706e-5
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1595A>G
  hgvsp: ENSP00000429556.1:p.Gln532Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1595A>G
  hgvsp: ENSP00000382924.3:p.Gln532Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-461A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1595A>G
  hgvsp: ENSP00000352927.3:p.Gln532Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.167A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1121A>G
  hgvsp: ENSP00000463438.1:p.Gln374Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2675A>G
  hgvsp: ENSP00000305027.11:p.Gln892Arg
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.50A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.34A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln532Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

18-8784706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784706
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784706
    reference: chr 18
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.168G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-460G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1596G>A
  hgvsp: ENST00000400050.3:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1596G>A
  hgvsp: ENST00000517570.1:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2676G>A
  hgvsp: ENST00000306329.11:c.2676G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1122G>A
  hgvsp: ENST00000520495.1:c.1122G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1596G>A
  hgvsp: ENST00000359865.3:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.51G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.35G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln532Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

18-8784708-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784708
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784708
    reference: chr 18
allele count: 2
allele frequency: 1.649702228747711e-5
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.170T>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1598T>A
  hgvsp: ENSP00000352927.3:p.Val533Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.53T>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-458T>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1598T>A
  hgvsp: ENSP00000382924.3:p.Val533Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.37T>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2678T>A
  hgvsp: ENSP00000305027.11:p.Val893Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1124T>A
  hgvsp: ENSP00000463438.1:p.Val375Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1598T>A
  hgvsp: ENSP00000429556.1:p.Val533Glu
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val533Glu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

18-8784712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784712
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784712
    reference: chr 18
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1602C>T
  hgvsp: ENST00000400050.3:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1128C>T
  hgvsp: ENST00000520495.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-454C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2682C>T
  hgvsp: ENST00000306329.11:c.2682C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.174C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.41C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1602C>T
  hgvsp: ENST00000359865.3:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1602C>T
  hgvsp: ENST00000517570.1:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.57C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15514
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn534Asn
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

18-8784713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784713
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784713
    reference: chr 18
allele count: 16
allele frequency: 1.319674700186404e-4
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-453C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.42C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.175C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.58C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2683C>T
  hgvsp: ENSP00000305027.11:p.Arg895Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1603C>T
  hgvsp: ENSP00000352927.3:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1603C>T
  hgvsp: ENSP00000429556.1:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1603C>T
  hgvsp: ENSP00000382924.3:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1129C>T
  hgvsp: ENSP00000463438.1:p.Arg377Cys
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg535Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

18-8784714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784714
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784714
    reference: chr 18
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.176G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1604G>A
  hgvsp: ENSP00000352927.3:p.Arg535His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.43G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1604G>A
  hgvsp: ENSP00000429556.1:p.Arg535His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-452G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.59G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2684G>A
  hgvsp: ENSP00000305027.11:p.Arg895His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1604G>A
  hgvsp: ENSP00000382924.3:p.Arg535His
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1130G>A
  hgvsp: ENSP00000463438.1:p.Arg377His
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26670
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg535His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

18-8784714-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784714
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784714
    reference: chr 18
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1130G>T
  hgvsp: ENSP00000463438.1:p.Arg377Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1604G>T
  hgvsp: ENSP00000429556.1:p.Arg535Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-452G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.59G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1604G>T
  hgvsp: ENSP00000352927.3:p.Arg535Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.176G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2684G>T
  hgvsp: ENSP00000305027.11:p.Arg895Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1604G>T
  hgvsp: ENSP00000382924.3:p.Arg535Leu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.43G>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15504
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg535Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

18-8784717-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784717
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784717
    reference: chr 18
allele count: 61
allele frequency: 5.030761871773303e-4
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1607T>C
  hgvsp: ENSP00000382924.3:p.Ile536Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1607T>C
  hgvsp: ENSP00000352927.3:p.Ile536Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1607T>C
  hgvsp: ENSP00000429556.1:p.Ile536Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.62T>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-449T>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.46T>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1133T>C
  hgvsp: ENSP00000463438.1:p.Ile378Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2687T>C
  hgvsp: ENSP00000305027.11:p.Ile896Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.179T>C
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile536Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

18-8784718-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784718
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784718
    reference: chr 18
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.47T>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1134T>G
  hgvsp: ENSP00000463438.1:p.Ile378Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1608T>G
  hgvsp: ENSP00000382924.3:p.Ile536Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1608T>G
  hgvsp: ENSP00000352927.3:p.Ile536Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2688T>G
  hgvsp: ENSP00000305027.11:p.Ile896Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.180T>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.63T>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1608T>G
  hgvsp: ENSP00000429556.1:p.Ile536Met
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-448T>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile536Met
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

18-8784719-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784719
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784719
    reference: chr 18
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1609G>T
  hgvsp: ENSP00000429556.1:p.Gly537Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.181G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-447G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1135G>T
  hgvsp: ENSP00000463438.1:p.Gly379Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2689G>T
  hgvsp: ENSP00000305027.11:p.Gly897Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.64G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1609G>T
  hgvsp: ENSP00000382924.3:p.Gly537Trp
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.48G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1609G>T
  hgvsp: ENSP00000352927.3:p.Gly537Trp
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15468
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly537Trp
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-8784720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784720
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784720
    reference: chr 18
allele count: 2
allele frequency: 1.649321304283287e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1610G>A
  hgvsp: ENSP00000352927.3:p.Gly537Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2690G>A
  hgvsp: ENSP00000305027.11:p.Gly897Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-446G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.182G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.49G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1136G>A
  hgvsp: ENSP00000463438.1:p.Gly379Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1610G>A
  hgvsp: ENSP00000382924.3:p.Gly537Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1610G>A
  hgvsp: ENSP00000429556.1:p.Gly537Glu
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.65G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly537Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

18-8784720-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784720
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784720
    reference: chr 18
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.49G>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2690G>C
  hgvsp: ENSP00000305027.11:p.Gly897Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1610G>C
  hgvsp: ENSP00000429556.1:p.Gly537Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1136G>C
  hgvsp: ENSP00000463438.1:p.Gly379Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.65G>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.182G>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1610G>C
  hgvsp: ENSP00000352927.3:p.Gly537Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1610G>C
  hgvsp: ENSP00000382924.3:p.Gly537Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-446G>C
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly537Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-8784721-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784721
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784721
    reference: chr 18
allele count: 7
allele frequency: 5.772814989526464e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-445G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.183G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1611G>T
  hgvsp: ENST00000400050.3:c.1611G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.66G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1611G>T
  hgvsp: ENST00000517570.1:c.1611G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1137G>T
  hgvsp: ENST00000520495.1:c.1137G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.50G>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1611G>T
  hgvsp: ENST00000359865.3:c.1611G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2691G>T
  hgvsp: ENST00000306329.11:c.2691G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly537Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

18-8784722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784722
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784722
    reference: chr 18
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1612G>A
  hgvsp: ENSP00000382924.3:p.Asp538Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1612G>A
  hgvsp: ENSP00000429556.1:p.Asp538Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.51G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-444G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.184G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1612G>A
  hgvsp: ENSP00000352927.3:p.Asp538Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2692G>A
  hgvsp: ENSP00000305027.11:p.Asp898Asn
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.67G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1138G>A
  hgvsp: ENSP00000463438.1:p.Asp380Asn
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp538Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

18-8784723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784723
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784723
    reference: chr 18
allele count: 17958
allele frequency: 1.480632554458058e-1
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1613A>G
  hgvsp: ENSP00000352927.3:p.Asp538Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-443A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.68A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2693A>G
  hgvsp: ENSP00000305027.11:p.Asp898Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1613A>G
  hgvsp: ENSP00000429556.1:p.Asp538Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1613A>G
  hgvsp: ENSP00000382924.3:p.Asp538Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.52A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1139A>G
  hgvsp: ENSP00000463438.1:p.Asp380Gly
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.185A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 699
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 3.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 9.75e1
  variant carriers: 11801
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.25e1
  variant carriers: 395
genotype depth: GenotypeDepth
  all individuals: 18446
  bin: 2.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 3.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 420
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp538Gly
num of homozygotes: 1585
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

18-8784727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784727
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784727
    reference: chr 18
allele count: 9
allele frequency: 7.421823459559309e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1617C>T
  hgvsp: ENST00000517570.1:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1143C>T
  hgvsp: ENST00000520495.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1617C>T
  hgvsp: ENST00000359865.3:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1617C>T
  hgvsp: ENST00000400050.3:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-439C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2697C>T
  hgvsp: ENST00000306329.11:c.2697C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.72C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.189C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.56C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly539Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

18-8784728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784728
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784728
    reference: chr 18
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1144C>T
  hgvsp: ENST00000520495.1:c.1144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-438C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1618C>T
  hgvsp: ENST00000400050.3:c.1618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1618C>T
  hgvsp: ENST00000359865.3:c.1618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.190C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2698C>T
  hgvsp: ENST00000306329.11:c.2698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.57C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.73C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1618C>T
  hgvsp: ENST00000517570.1:c.1618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu540Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/18-8784730-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784730
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784730
    reference: chr 18
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-436A>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.75A>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.59A>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1620A>C
  hgvsp: ENST00000517570.1:c.1620A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1146A>C
  hgvsp: ENST00000520495.1:c.1146A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1620A>C
  hgvsp: ENST00000400050.3:c.1620A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2700A>C
  hgvsp: ENST00000306329.11:c.2700A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.192A>C
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1620A>C
  hgvsp: ENST00000359865.3:c.1620A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu540Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

18-8784730-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784730
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784730
    reference: chr 18
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.75A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2700A>G
  hgvsp: ENST00000306329.11:c.2700A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1620A>G
  hgvsp: ENST00000517570.1:c.1620A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.192A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1146A>G
  hgvsp: ENST00000520495.1:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1620A>G
  hgvsp: ENST00000359865.3:c.1620A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1620A>G
  hgvsp: ENST00000400050.3:c.1620A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-436A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.59A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu540Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/18-8784732-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784732
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784732
    reference: chr 18
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.61C>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2702C>A
  hgvsp: ENSP00000305027.11:p.Ser901Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1148C>A
  hgvsp: ENSP00000463438.1:p.Ser383Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-434C>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1622C>A
  hgvsp: ENSP00000382924.3:p.Ser541Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.77C>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1622C>A
  hgvsp: ENSP00000429556.1:p.Ser541Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1622C>A
  hgvsp: ENSP00000352927.3:p.Ser541Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.194C>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser541Tyr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

18-8784732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784732
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784732
    reference: chr 18
allele count: 3
allele frequency: 2.474063566939913e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1622C>T
  hgvsp: ENSP00000382924.3:p.Ser541Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1622C>T
  hgvsp: ENSP00000429556.1:p.Ser541Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.77C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-434C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2702C>T
  hgvsp: ENSP00000305027.11:p.Ser901Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.194C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1622C>T
  hgvsp: ENSP00000352927.3:p.Ser541Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.61C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1148C>T
  hgvsp: ENSP00000463438.1:p.Ser383Phe
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser541Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

18-8784733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784733
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784733
    reference: chr 18
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.62C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.78C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-433C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1623C>T
  hgvsp: ENST00000517570.1:c.1623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2703C>T
  hgvsp: ENST00000306329.11:c.2703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.195C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1623C>T
  hgvsp: ENST00000359865.3:c.1623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1149C>T
  hgvsp: ENST00000520495.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1623C>T
  hgvsp: ENST00000400050.3:c.1623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser541Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/18-8784734-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784734
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784734
    reference: chr 18
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1624C>A
  hgvsp: ENSP00000382924.3:p.Pro542Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1624C>A
  hgvsp: ENSP00000429556.1:p.Pro542Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1624C>A
  hgvsp: ENSP00000352927.3:p.Pro542Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-432C>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.196C>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.63C>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1150C>A
  hgvsp: ENSP00000463438.1:p.Pro384Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2704C>A
  hgvsp: ENSP00000305027.11:p.Pro902Thr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.79C>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro542Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

18-8784734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784734
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784734
    reference: chr 18
allele count: 24
allele frequency: 1.979283499373227e-4
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.79C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-432C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1624C>T
  hgvsp: ENSP00000382924.3:p.Pro542Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1624C>T
  hgvsp: ENSP00000429556.1:p.Pro542Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.63C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1150C>T
  hgvsp: ENSP00000463438.1:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2704C>T
  hgvsp: ENSP00000305027.11:p.Pro902Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1624C>T
  hgvsp: ENSP00000352927.3:p.Pro542Ser
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.196C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro542Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

18-8784739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784739
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784739
    reference: chr 18
allele count: 42
allele frequency: 3.463974663499604e-4
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.201G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1629G>A
  hgvsp: ENST00000359865.3:c.1629G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2709G>A
  hgvsp: ENST00000306329.11:c.2709G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1629G>A
  hgvsp: ENST00000517570.1:c.1629G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1629G>A
  hgvsp: ENST00000400050.3:c.1629G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.68G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1155G>A
  hgvsp: ENST00000520495.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-427G>A
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.84G>A
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16888
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 9.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu543Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

18-8784743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784743
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784743
    reference: chr 18
allele count: 2
allele frequency: 1.649675014022238e-5
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1633C>T
  hgvsp: ENSP00000352927.3:p.His545Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1633C>T
  hgvsp: ENSP00000429556.1:p.His545Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.88C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.205C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1633C>T
  hgvsp: ENSP00000382924.3:p.His545Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-423C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2713C>T
  hgvsp: ENSP00000305027.11:p.His905Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1159C>T
  hgvsp: ENSP00000463438.1:p.His387Tyr
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.72C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His545Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

18-8784749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784749
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784749
    reference: chr 18
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1165A>G
  hgvsp: ENSP00000463438.1:p.Thr389Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1639A>G
  hgvsp: ENSP00000352927.3:p.Thr547Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2719A>G
  hgvsp: ENSP00000305027.11:p.Thr907Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1639A>G
  hgvsp: ENSP00000382924.3:p.Thr547Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1639A>G
  hgvsp: ENSP00000429556.1:p.Thr547Ala
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.78A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.94A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.211A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-417A>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr547Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

18-8784751-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784751
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784751
    reference: chr 18
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1641A>G
  hgvsp: ENST00000517570.1:c.1641A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.96A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2721A>G
  hgvsp: ENST00000306329.11:c.2721A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-415A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1641A>G
  hgvsp: ENST00000359865.3:c.1641A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1641A>G
  hgvsp: ENST00000400050.3:c.1641A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.213A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.80A>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1167A>G
  hgvsp: ENST00000520495.1:c.1167A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34306
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr547Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

18-8784759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784759
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784759
    reference: chr 18
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1649C>T
  hgvsp: ENSP00000429556.1:p.Ser550Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-407C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.221C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2729C>T
  hgvsp: ENSP00000305027.11:p.Ser910Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.104C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1175C>T
  hgvsp: ENSP00000463438.1:p.Ser392Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1649C>T
  hgvsp: ENSP00000352927.3:p.Ser550Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1649C>T
  hgvsp: ENSP00000382924.3:p.Ser550Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.88C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34240
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser550Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

18-8784763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784763
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784763
    reference: chr 18
allele count: 2
allele frequency: 1.652264428399121e-5
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-403C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.108C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.92C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1179C>T
  hgvsp: ENST00000520495.1:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1653C>T
  hgvsp: ENST00000517570.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1653C>T
  hgvsp: ENST00000400050.3:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1653C>T
  hgvsp: ENST00000359865.3:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.225C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2733C>T
  hgvsp: ENST00000306329.11:c.2733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser551Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

18-8784771-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784771
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784771
    reference: chr 18
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.100C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.233C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1187C>G
  hgvsp: ENSP00000463438.1:p.Ser396Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2741C>G
  hgvsp: ENSP00000305027.11:p.Ser914Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1661C>G
  hgvsp: ENSP00000352927.3:p.Ser554Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-395C>G
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1661C>G
  hgvsp: ENSP00000429556.1:p.Ser554Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1661C>G
  hgvsp: ENSP00000382924.3:p.Ser554Cys
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.116C>G
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser554Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

18-8784783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784783
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784783
    reference: chr 18
allele count: 1
allele frequency: 8.332083520805212e-6
allele num: 120018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2753C>T
  hgvsp: ENSP00000305027.11:p.Ser918Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.128C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1673C>T
  hgvsp: ENSP00000382924.3:p.Ser558Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.112C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1673C>T
  hgvsp: ENSP00000429556.1:p.Ser558Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-383C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.245C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1199C>T
  hgvsp: ENSP00000463438.1:p.Ser400Phe
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1673C>T
  hgvsp: ENSP00000352927.3:p.Ser558Phe
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser558Phe
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

18-8784784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8784784
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8784784
    reference: chr 18
allele count: 160
allele frequency: 1.334423112208303e-3
allele num: 119902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000429556
  ensembl transcript: ENST00000517570
  gene symbol: SOGA2
  hgvsc: ENST00000517570.1:c.1674C>T
  hgvsp: ENST00000517570.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000303670
  ensembl transcript: ENST00000306285
  gene symbol: SOGA2
  hgvsc: ENST00000306285.7:c.-382C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000305027
  ensembl transcript: ENST00000306329
  gene symbol: SOGA2
  hgvsc: ENST00000306329.11:c.2754C>T
  hgvsp: ENST00000306329.11:c.2754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000382924
  ensembl transcript: ENST00000400050
  gene symbol: SOGA2
  hgvsc: ENST00000400050.3:c.1674C>T
  hgvsp: ENST00000400050.3:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000352927
  ensembl transcript: ENST00000359865
  gene symbol: SOGA2
  hgvsc: ENST00000359865.3:c.1674C>T
  hgvsp: ENST00000359865.3:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168502
  ensembl protein: ENSP00000463438
  ensembl transcript: ENST00000520495
  gene symbol: SOGA2
  hgvsc: ENST00000520495.1:c.1200C>T
  hgvsp: ENST00000520495.1:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000523811
  gene symbol: SOGA2
  hgvsc: ENST00000523811.2:n.246C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000517554
  gene symbol: SOGA2
  hgvsc: ENST00000517554.1:n.129C>T
  variant of: http://identifiers.org/hgnc/29121
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168502
  ensembl transcript: ENST00000521018
  gene symbol: SOGA2
  hgvsc: ENST00000521018.1:n.113C>T
  variant of: http://identifiers.org/hgnc/29121
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Ser558Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37716
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.496503496503497e-4
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.666645926018106e-5
allele num: 64286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.957981855801369e-5
allele num: 12566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.992220227408737e-4
allele num: 10026
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.271e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 3.707416e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37711
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.611e0

DP
type: SiteQuality
SIO_000300: 3.708088e6

VQSLOD
type: SiteQuality
SIO_000300: -5.918e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.681e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 1361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 696
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37737
bin: 9.75e1
variant carriers: 91

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102891895246369e-5
allele num: 64456
num of homozygotes: 0

African
type: Population
allele count: 83
allele frequency: 8.257063270990848e-3
allele num: 10052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.214670606640013e-4
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

FS
type: SiteQuality
SIO_000300: 1.274e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

DP
type: SiteQuality
SIO_000300: 3.71194e6

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.244e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 3.709449e6

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

GenotypeQuality
all individuals: 3453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37709
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8362
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.538698261270965e-4
allele num: 12998
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.216484089723526e-4
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.105300748377481e-5
allele num: 64406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 3.709449e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeQuality
all individuals: 8508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37715
bin: 9.75e1
variant carriers: 124

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10022
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.551060925673161e-5
allele num: 64472
num of homozygotes: 0

South Asian
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allele frequency: 1.518141794443601e-4
allele num: 13174
num of homozygotes: 0

East Asian
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allele count: 120
allele frequency: 1.399580125962211e-2
allele num: 8574
num of homozygotes: 1

Other
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allele frequency: 0.0e0
allele num: 864
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e0

DP
type: SiteQuality
SIO_000300: 3.714029e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.083691983775583e-4
allele num: 64594
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 866
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10000
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Latino
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allele frequency: 0.0e0
allele num: 11506
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
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DP
type: SiteQuality
SIO_000300: 3.711524e6

FS
type: SiteQuality
SIO_000300: 1.347e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

Other
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allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10014
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64616
num of homozygotes: 0

East Asian
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allele frequency: 1.866977829638273e-3
allele num: 8570
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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SIO_000300: 3.713005e6

FS
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
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SIO_000300: 1.2e-3

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.441e1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10022
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Latino
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allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64708
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 5.988e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.713865e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10014
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64690
num of homozygotes: 0

South Asian
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allele frequency: 7.161271841879118e-5
allele num: 13964
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.007e0

DP
type: SiteQuality
SIO_000300: 3.715007e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.137e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10026
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.089757454039858e-5
allele num: 64730
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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QD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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allele num: 11508
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.543733983759918e-5
allele num: 64778
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.081189339084887e-5
allele num: 64910
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Other
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InbreedingCoeff
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MQRankSum
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DP
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

South Asian
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allele num: 14706
num of homozygotes: 0

African
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Latino
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allele frequency: 8.682062858135092e-5
allele num: 11518
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 10
allele frequency: 1.537893700787402e-4
allele num: 65024
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MQ
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SIO_000300: 5.978e1

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 3.728279e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.702412868632708e-5
allele num: 14920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535107918086642e-5
allele num: 65142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

DP
type: SiteQuality
SIO_000300: 3.731644e6

FS
type: SiteQuality
SIO_000300: 7.333e0

QD
type: SiteQuality
SIO_000300: 1.528e1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 1169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.544502617801048e-5
allele num: 15280
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.332089552238806e-4
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.062974761087968e-5
allele num: 65296
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 5.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.452e-1

DP
type: SiteQuality
SIO_000300: 3.741509e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.869e1

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 106

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 8386
bin: 6.25e1
variant carriers: 131

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 53

GenotypeQuality
all individuals: 956
bin: 7.25e1
variant carriers: 101

GenotypeQuality
all individuals: 2859
bin: 6.75e1
variant carriers: 139

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 141

GenotypeQuality
all individuals: 43115
bin: 9.75e1
variant carriers: 34204

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 123

GenotypeQuality
all individuals: 856
bin: 2.25e1
variant carriers: 32

Latino
type: Population
allele count: 6676
allele frequency: 5.797151788815561e-1
allele num: 11516
num of homozygotes: 1925

African
type: Population
allele count: 1772
allele frequency: 1.744094488188976e-1
allele num: 10160
num of homozygotes: 170

Other
type: Population
allele count: 304
allele frequency: 3.408071748878924e-1
allele num: 892
num of homozygotes: 48

European (Finnish)
type: Population
allele count: 2657
allele frequency: 4.028198908429351e-1
allele num: 6596
num of homozygotes: 539

East Asian
type: Population
allele count: 2109
allele frequency: 2.463785046728972e-1
allele num: 8560
num of homozygotes: 270

European (Non-Finnish)
type: Population
allele count: 24126
allele frequency: 3.665117126971106e-1
allele num: 65826
num of homozygotes: 4413

South Asian
type: Population
allele count: 6592
allele frequency: 4.124640220247779e-1
allele num: 15982
num of homozygotes: 1409

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

DP
type: SiteQuality
SIO_000300: 3.925522e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.56e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

QD
type: SiteQuality
SIO_000300: 2.003e1

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15723
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.329916123019571e-4
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65928
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.874e1

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.425e0

DP
type: SiteQuality
SIO_000300: 2.403332e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.21e-1

FS
type: SiteQuality
SIO_000300: 3.625e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

FS
type: SiteQuality
SIO_000300: 9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.414671e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

QD
type: SiteQuality
SIO_000300: 1.716e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

GenotypeQuality
all individuals: 8393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15713
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1878
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.9165856503986e-4
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.341e1

VQSLOD
type: SiteQuality
SIO_000300: -5.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 2.419621e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
all individuals: 1136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25709
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.24e1

FS
type: SiteQuality
SIO_000300: 4.276e0

DP
type: SiteQuality
SIO_000300: 2.422301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-1

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.942124684404739e-4
allele num: 10298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.422653e6

QD
type: SiteQuality
SIO_000300: 1.595e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.423218e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.528e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.025e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 4.38e0

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 2.42384e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

VQSLOD
type: SiteQuality
SIO_000300: -9.569e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016682252858306e-5
allele num: 66298
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.515570934256056e-4
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.325e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.424384e6

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1885
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 2.424542e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.495e1

FS
type: SiteQuality
SIO_000300: 4.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -5.8e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8466
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 7.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.905e1

VQSLOD
type: SiteQuality
SIO_000300: -8.446e-1

DP
type: SiteQuality
SIO_000300: 2.426052e6

FS
type: SiteQuality
SIO_000300: 1.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 400

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 18
allele frequency: 1.556824078879087e-3
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.034511835210504e-5
allele num: 66412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 384
allele frequency: 3.715170278637771e-2
allele num: 10336
num of homozygotes: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.26e-2

QD
type: SiteQuality
SIO_000300: 1.566e1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 2.432962e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.758e1

FS
type: SiteQuality
SIO_000300: 9.26e-1

DP
type: SiteQuality
SIO_000300: 2.418429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.75e-1

QD
type: SiteQuality
SIO_000300: 1.607e1

VQSLOD
type: SiteQuality
SIO_000300: -8.406e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.056e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.419e0

VQSLOD
type: SiteQuality
SIO_000300: 3.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.568e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.393e0

DP
type: SiteQuality
SIO_000300: 2.418933e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1137
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GenotypeQuality
all individuals: 2707
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.276e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 2.420068e6

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.670709520921771e-4
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.611e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

DP
type: SiteQuality
SIO_000300: 2.420631e6

QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005259203606311e-5
allele num: 66550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.420436e6

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.668e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 2.421046e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.315e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.17e0

MQ
type: SiteQuality
SIO_000300: 5.731e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1908
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.706e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 2.422459e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

QD
type: SiteQuality
SIO_000300: 1.513e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.422819e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.987e0

VQSLOD
type: SiteQuality
SIO_000300: -2.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

East Asian
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allele count: 10
allele frequency: 1.16144018583043e-3
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 2.423373e6

FS
type: SiteQuality
SIO_000300: 6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.285e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.233e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.329e-1

DP
type: SiteQuality
SIO_000300: 2.423273e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.423377e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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FS
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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allele num: 16512
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Other
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African
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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DP
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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allele frequency: 6.00096015362458e-4
allele num: 66656
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MQ
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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FS
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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MQ
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DP
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.422139e6

FS
type: SiteQuality
SIO_000300: 4.485e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.179e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15469
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.050136517747307e-4
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

FS
type: SiteQuality
SIO_000300: 1.165e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

QD
type: SiteQuality
SIO_000300: 1.538e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.422463e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15463
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.421875e6

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.839e0

VQSLOD
type: SiteQuality
SIO_000300: -8.840000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8124
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 18681
bin: 9.75e1
variant carriers: 16318

GenotypeQuality
all individuals: 25398
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2764
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 2

East Asian
type: Population
allele count: 2572
allele frequency: 2.982374768089054e-1
allele num: 8624
num of homozygotes: 387

Other
type: Population
allele count: 112
allele frequency: 1.233480176211454e-1
allele num: 908
num of homozygotes: 2

African
type: Population
allele count: 1843
allele frequency: 1.775187825081873e-1
allele num: 10382
num of homozygotes: 153

European (Non-Finnish)
type: Population
allele count: 10402
allele frequency: 1.560081588577599e-1
allele num: 66676
num of homozygotes: 878

Latino
type: Population
allele count: 748
allele frequency: 6.464995678478824e-2
allele num: 11570
num of homozygotes: 23

European (Finnish)
type: Population
allele count: 1095
allele frequency: 1.655579074690051e-1
allele num: 6614
num of homozygotes: 88

South Asian
type: Population
allele count: 1186
allele frequency: 7.18265503875969e-2
allele num: 16512
num of homozygotes: 54

DP
type: SiteQuality
SIO_000300: 3.249624e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.541e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e0

GenotypeQuality
all individuals: 34333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.780082987551867e-4
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.638e0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 1.833839e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 11403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
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variant carriers: 0

GenotypeQuality
all individuals: 34356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3227
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.602e0

DP
type: SiteQuality
SIO_000300: 1.833e6

FS
type: SiteQuality
SIO_000300: 3.249e0

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 9.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.192e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

DP
type: SiteQuality
SIO_000300: 1.833003e6

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.192e0

QD
type: SiteQuality
SIO_000300: 1.352e1

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.833003e6

GenotypeQuality
all individuals: 3833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

Other
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.000300030003e-5
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European (Finnish)
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allele frequency: 0.0e0
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QD
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.5001500150015e-5
allele num: 66660
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Other
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.929012345679012e-4
allele num: 10368
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South Asian
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

African
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South Asian
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Other
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East Asian
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InbreedingCoeff
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QD
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66664
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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MQRankSum
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ClippingRankSum
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DP
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.434500347785764e-3
allele num: 8626
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Latino
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South Asian
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allele frequency: 1.817300702689605e-4
allele num: 16508
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African
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European (Finnish)
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Other
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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Latino
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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Other
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 9.82e0

FS
type: SiteQuality
SIO_000300: 6.437e0

DP
type: SiteQuality
SIO_000300: 1.827466e6

VQSLOD
type: SiteQuality
SIO_000300: -1.006e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

GenotypeQuality
all individuals: 897
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.553e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

DP
type: SiteQuality
SIO_000300: 1.825834e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.735e1

FS
type: SiteQuality
SIO_000300: 7.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34250
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 5.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

DP
type: SiteQuality
SIO_000300: 1.825313e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.44e-1

DP
type: SiteQuality
SIO_000300: 1.821757e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

FS
type: SiteQuality
SIO_000300: 6.054e0

VQSLOD
type: SiteQuality
SIO_000300: 8.159999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
all individuals: 32924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512630464377553e-5
allele num: 66110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.805736e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

VQSLOD
type: SiteQuality
SIO_000300: 7.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 2.588e0

QD
type: SiteQuality
SIO_000300: 1.49e1