19-5244420-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244420
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244420
    reference: chr 19
allele count: 14
allele frequency: 1.155229890748259e-4
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1050G>C
  hgvsp: ENST00000262963.6:c.1050G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.1023G>C
  hgvsp: ENST00000348075.2:c.1023G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1062G>C
  hgvsp: ENST00000587303.1:c.1062G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1065G>C
  hgvsp: ENST00000372412.4:c.1065G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.1023G>C
  hgvsp: ENST00000353284.2:c.1023G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1257G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1062G>C
  hgvsp: ENST00000357368.4:c.1062G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.1023G>C
  hgvsp: ENST00000592099.1:c.1023G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.1023G>C
  hgvsp: ENST00000588012.1:c.1023G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 41909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser354Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-5244438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244438
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244438
    reference: chr 19
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.1005C>T
  hgvsp: ENST00000353284.2:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1032C>T
  hgvsp: ENST00000262963.6:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1047C>T
  hgvsp: ENST00000372412.4:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1044C>T
  hgvsp: ENST00000587303.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.1005C>T
  hgvsp: ENST00000592099.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1044C>T
  hgvsp: ENST00000357368.4:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1239C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.1005C>T
  hgvsp: ENST00000588012.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.1005C>T
  hgvsp: ENST00000348075.2:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile348Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

19-5244440-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244440
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244440
    reference: chr 19
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.1003A>T
  hgvsp: ENSP00000467398.1:p.Ile335Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1045A>T
  hgvsp: ENSP00000361489.4:p.Ile349Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.1003A>T
  hgvsp: ENSP00000327313.2:p.Ile335Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1042A>T
  hgvsp: ENSP00000467537.1:p.Ile348Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1030A>T
  hgvsp: ENSP00000262963.6:p.Ile344Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1042A>T
  hgvsp: ENSP00000349932.4:p.Ile348Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.1003A>T
  hgvsp: ENSP00000269907.3:p.Ile335Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1237A>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.1003A>T
  hgvsp: ENSP00000465443.1:p.Ile335Phe
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile348Phe
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-5244454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244454
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244454
    reference: chr 19
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.989A>G
  hgvsp: ENSP00000269907.3:p.Asn330Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1016A>G
  hgvsp: ENSP00000262963.6:p.Asn339Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1028A>G
  hgvsp: ENSP00000467537.1:p.Asn343Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.989A>G
  hgvsp: ENSP00000465443.1:p.Asn330Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1223A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.989A>G
  hgvsp: ENSP00000467398.1:p.Asn330Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1028A>G
  hgvsp: ENSP00000349932.4:p.Asn343Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.989A>G
  hgvsp: ENSP00000327313.2:p.Asn330Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1031A>G
  hgvsp: ENSP00000361489.4:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn343Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

19-5244460-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244460
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244460
    reference: chr 19
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.983C>G
  hgvsp: ENSP00000269907.3:p.Thr328Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.983C>G
  hgvsp: ENSP00000465443.1:p.Thr328Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.983C>G
  hgvsp: ENSP00000327313.2:p.Thr328Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1010C>G
  hgvsp: ENSP00000262963.6:p.Thr337Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1025C>G
  hgvsp: ENSP00000361489.4:p.Thr342Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.983C>G
  hgvsp: ENSP00000467398.1:p.Thr328Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1217C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1022C>G
  hgvsp: ENSP00000349932.4:p.Thr341Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1022C>G
  hgvsp: ENSP00000467537.1:p.Thr341Ser
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr341Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-5244467-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244467
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244467
    reference: chr 19
allele count: 3
allele frequency: 2.500375056258439e-5
allele num: 119982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1015A>G
  hgvsp: ENSP00000467537.1:p.Met339Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1210A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1018A>G
  hgvsp: ENSP00000361489.4:p.Met340Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.976A>G
  hgvsp: ENSP00000327313.2:p.Met326Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1003A>G
  hgvsp: ENSP00000262963.6:p.Met335Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.976A>G
  hgvsp: ENSP00000467398.1:p.Met326Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.976A>G
  hgvsp: ENSP00000465443.1:p.Met326Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.976A>G
  hgvsp: ENSP00000269907.3:p.Met326Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1015A>G
  hgvsp: ENSP00000349932.4:p.Met339Val
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met339Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-5244469-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244469
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244469
    reference: chr 19
allele count: 1
allele frequency: 8.358827757995218e-6
allele num: 119634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1013C>T
  hgvsp: ENSP00000467537.1:p.Pro338Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1013C>T
  hgvsp: ENSP00000349932.4:p.Pro338Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.1001C>T
  hgvsp: ENSP00000262963.6:p.Pro334Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.974C>T
  hgvsp: ENSP00000465443.1:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.974C>T
  hgvsp: ENSP00000467398.1:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1016C>T
  hgvsp: ENSP00000361489.4:p.Pro339Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1208C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.974C>T
  hgvsp: ENSP00000327313.2:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.974C>T
  hgvsp: ENSP00000269907.3:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro338Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-5244474-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244474
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244474
    reference: chr 19
allele count: 59
allele frequency: 4.939057058665952e-4
allele num: 119456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.969G>T
  hgvsp: ENST00000588012.1:c.969G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.969G>T
  hgvsp: ENST00000353284.2:c.969G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1008G>T
  hgvsp: ENST00000357368.4:c.1008G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1011G>T
  hgvsp: ENST00000372412.4:c.1011G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1008G>T
  hgvsp: ENST00000587303.1:c.1008G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.996G>T
  hgvsp: ENST00000262963.6:c.996G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.969G>T
  hgvsp: ENST00000592099.1:c.969G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1203G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.969G>T
  hgvsp: ENST00000348075.2:c.969G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39899
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly336Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

19-5244474-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244474
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244474
    reference: chr 19
allele count: 15
allele frequency: 1.255692472542191e-4
allele num: 119456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1203G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.969G>C
  hgvsp: ENST00000353284.2:c.969G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1008G>C
  hgvsp: ENST00000587303.1:c.1008G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1008G>C
  hgvsp: ENST00000357368.4:c.1008G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.969G>C
  hgvsp: ENST00000588012.1:c.969G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1011G>C
  hgvsp: ENST00000372412.4:c.1011G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.969G>C
  hgvsp: ENST00000348075.2:c.969G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.969G>C
  hgvsp: ENST00000592099.1:c.969G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.996G>C
  hgvsp: ENST00000262963.6:c.996G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly336Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-5244474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244474
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244474
    reference: chr 19
allele count: 2
allele frequency: 1.674256630056255e-5
allele num: 119456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1008G>A
  hgvsp: ENST00000587303.1:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.969G>A
  hgvsp: ENST00000588012.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1203G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.969G>A
  hgvsp: ENST00000353284.2:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1008G>A
  hgvsp: ENST00000357368.4:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.969G>A
  hgvsp: ENST00000592099.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1011G>A
  hgvsp: ENST00000372412.4:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.969G>A
  hgvsp: ENST00000348075.2:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.996G>A
  hgvsp: ENST00000262963.6:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly336Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-5244476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244476
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244476
    reference: chr 19
allele count: 1
allele frequency: 8.391092016715055e-6
allele num: 119174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.967G>A
  hgvsp: ENSP00000269907.3:p.Gly323Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.967G>A
  hgvsp: ENSP00000467398.1:p.Gly323Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1006G>A
  hgvsp: ENSP00000349932.4:p.Gly336Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1006G>A
  hgvsp: ENSP00000467537.1:p.Gly336Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.967G>A
  hgvsp: ENSP00000465443.1:p.Gly323Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1009G>A
  hgvsp: ENSP00000361489.4:p.Gly337Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.967G>A
  hgvsp: ENSP00000327313.2:p.Gly323Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1201G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.994G>A
  hgvsp: ENSP00000262963.6:p.Gly332Arg
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly336Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-5244477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244477
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244477
    reference: chr 19
allele count: 2
allele frequency: 1.685260709831811e-5
allele num: 118676
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.1005C>T
  hgvsp: ENST00000357368.4:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.993C>T
  hgvsp: ENST00000262963.6:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.966C>T
  hgvsp: ENST00000348075.2:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.966C>T
  hgvsp: ENST00000592099.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.966C>T
  hgvsp: ENST00000353284.2:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1200C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.1005C>T
  hgvsp: ENST00000587303.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.1008C>T
  hgvsp: ENST00000372412.4:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.966C>T
  hgvsp: ENST00000588012.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro335Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-5244491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244491
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244491
    reference: chr 19
allele count: 1
allele frequency: 8.509479560230096e-6
allele num: 117516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.952C>T
  hgvsp: ENSP00000467398.1:p.Leu318Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.952C>T
  hgvsp: ENSP00000269907.3:p.Leu318Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.994C>T
  hgvsp: ENSP00000361489.4:p.Leu332Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.952C>T
  hgvsp: ENSP00000465443.1:p.Leu318Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.952C>T
  hgvsp: ENSP00000327313.2:p.Leu318Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.991C>T
  hgvsp: ENSP00000349932.4:p.Leu331Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.991C>T
  hgvsp: ENSP00000467537.1:p.Leu331Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.979C>T
  hgvsp: ENSP00000262963.6:p.Leu327Phe
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1186C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu331Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-5244491-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244491
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244491
    reference: chr 19
allele count: 3
allele frequency: 2.552843868069029e-5
allele num: 117516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.952C>G
  hgvsp: ENSP00000467398.1:p.Leu318Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.979C>G
  hgvsp: ENSP00000262963.6:p.Leu327Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.952C>G
  hgvsp: ENSP00000465443.1:p.Leu318Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.991C>G
  hgvsp: ENSP00000467537.1:p.Leu331Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.991C>G
  hgvsp: ENSP00000349932.4:p.Leu331Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.952C>G
  hgvsp: ENSP00000327313.2:p.Leu318Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.994C>G
  hgvsp: ENSP00000361489.4:p.Leu332Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1186C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.952C>G
  hgvsp: ENSP00000269907.3:p.Leu318Val
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu331Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-5244498-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244498
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244498
    reference: chr 19
allele count: 4
allele frequency: 3.434478731990452e-5
allele num: 116466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-5C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-5C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
hgvs: c.989-5C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

19-5244504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244504
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244504
    reference: chr 19
allele count: 1
allele frequency: 8.664159836420662e-6
allele num: 115418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-11C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-11C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-5244506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244506
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244506
    reference: chr 19
allele count: 1
allele frequency: 8.682364381468362e-6
allele num: 115176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-13C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-5244508-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244508
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244508
    reference: chr 19
allele count: 1
allele frequency: 8.743551630672379e-6
allele num: 114370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-15G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-15G>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

19-5244519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244519
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244519
    reference: chr 19
allele count: 10
allele frequency: 8.911067545891998e-5
allele num: 112220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-26G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-26G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26085
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

19-5244520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244520
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244520
    reference: chr 19
allele count: 71
allele frequency: 6.366913571390139e-4
allele num: 111514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-27C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 25067
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12347
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10589
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-5244523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244523
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244523
    reference: chr 19
allele count: 2
allele frequency: 1.804891255301868e-5
allele num: 110810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-30A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-30A>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-5244531-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244531
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244531
    reference: chr 19
allele count: 1124
allele frequency: 1.030379700419852e-2
allele num: 109086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-38T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-38T>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 2.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 16896
  bin: 2.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 14575
  bin: 1.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 1.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 7.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 5247
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 1095
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.25e1
  variant carriers: 4
num of homozygotes: 8
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum

19-5244532-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5244532
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5244532
    reference: chr 19
allele count: 11
allele frequency: 1.011829203230495e-4
allele num: 108714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.977-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.950-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.992-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.950-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.950-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1184-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.989-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.989-39A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.950-39A>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16075
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

19-5245736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245736
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245736
    reference: chr 19
allele count: 1
allele frequency: 9.313762014753e-6
allele num: 107368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+51C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+51C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

19-5245739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245739
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245739
    reference: chr 19
allele count: 2
allele frequency: 1.866368047779022e-5
allele num: 107160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+48G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+48G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-5245740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245740
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245740
    reference: chr 19
allele count: 5
allele frequency: 4.661135452596253e-5
allele num: 107270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+47C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+47C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16502
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-5245742-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245742
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245743
    reference: chr 19
allele count: 1
allele frequency: 9.309773400115442e-6
allele num: 107414
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+44dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+44dupA
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5831
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

19-5245744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245744
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245744
    reference: chr 19
allele count: 10
allele frequency: 9.304402843425508e-5
allele num: 107476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+43G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+43G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 18038
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

19-5245747-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245747
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245747
    reference: chr 19
allele count: 1
allele frequency: 9.295235262404491e-6
allele num: 107582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+40C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+40C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

19-5245765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245765
    reference: chr 19
allele count: 2
allele frequency: 1.846585663108912e-5
allele num: 108308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+22C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+22C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

19-5245767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245767
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245767
    reference: chr 19
allele count: 1
allele frequency: 9.217269476090403e-6
allele num: 108492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+20C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+20C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-5245772-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245772
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245772
    reference: chr 19
allele count: 9
allele frequency: 8.267043888817445e-5
allele num: 108866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+15T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+15T>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20451
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23230
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5245774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245774
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245774
    reference: chr 19
allele count: 1
allele frequency: 9.182905103858657e-6
allele num: 108898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.991+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1183+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.949+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.949+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.988+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.949+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.976+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.949+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.988+13C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23106
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

19-5245794-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245794
    reference: chr 19
allele count: 682
allele frequency: 6.158569622539281e-3
allele num: 110740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1176G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.942G>C
  hgvsp: ENST00000592099.1:c.942G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.981G>C
  hgvsp: ENST00000587303.1:c.981G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.981G>C
  hgvsp: ENST00000357368.4:c.981G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.942G>C
  hgvsp: ENST00000588012.1:c.942G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.942G>C
  hgvsp: ENST00000348075.2:c.942G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.969G>C
  hgvsp: ENST00000262963.6:c.969G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.942G>C
  hgvsp: ENST00000353284.2:c.942G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.984G>C
  hgvsp: ENST00000372412.4:c.984G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21442
  bin: 2.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 22879
  bin: 2.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 3.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6103
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr327Thr
num of homozygotes: 27
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-5245794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245794
    reference: chr 19
allele count: 12
allele frequency: 1.083619288423334e-4
allele num: 110740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.981G>A
  hgvsp: ENST00000587303.1:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.942G>A
  hgvsp: ENST00000588012.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.969G>A
  hgvsp: ENST00000262963.6:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.942G>A
  hgvsp: ENST00000348075.2:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.942G>A
  hgvsp: ENST00000353284.2:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1176G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.942G>A
  hgvsp: ENST00000592099.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.981G>A
  hgvsp: ENST00000357368.4:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.984G>A
  hgvsp: ENST00000372412.4:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22879
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21442
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5309
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr327Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

19-5245795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245795
    reference: chr 19
allele count: 2
allele frequency: 1.8001800180018e-5
allele num: 111100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.941C>T
  hgvsp: ENSP00000269907.3:p.Thr314Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.941C>T
  hgvsp: ENSP00000327313.2:p.Thr314Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1175C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.980C>T
  hgvsp: ENSP00000349932.4:p.Thr327Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.980C>T
  hgvsp: ENSP00000467537.1:p.Thr327Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.968C>T
  hgvsp: ENSP00000262963.6:p.Thr323Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.941C>T
  hgvsp: ENSP00000465443.1:p.Thr314Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.983C>T
  hgvsp: ENSP00000361489.4:p.Thr328Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.941C>T
  hgvsp: ENSP00000467398.1:p.Thr314Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr327Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

19-5245809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245809
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245809
    reference: chr 19
allele count: 6
allele frequency: 5.302508086324832e-5
allele num: 113154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.927G>A
  hgvsp: ENST00000588012.1:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.966G>A
  hgvsp: ENST00000587303.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.966G>A
  hgvsp: ENST00000357368.4:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1161G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.969G>A
  hgvsp: ENST00000372412.4:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.927G>A
  hgvsp: ENST00000592099.1:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.927G>A
  hgvsp: ENST00000353284.2:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.954G>A
  hgvsp: ENST00000262963.6:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.927G>A
  hgvsp: ENST00000348075.2:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22512
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40521
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala322Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

19-5245817-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245817
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245817
    reference: chr 19
allele count: 1
allele frequency: 8.688248275382717e-6
allele num: 115098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.919A>G
  hgvsp: ENSP00000327313.2:p.Ile307Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.919A>G
  hgvsp: ENSP00000465443.1:p.Ile307Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.946A>G
  hgvsp: ENSP00000262963.6:p.Ile316Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.919A>G
  hgvsp: ENSP00000269907.3:p.Ile307Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.961A>G
  hgvsp: ENSP00000361489.4:p.Ile321Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1153A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.919A>G
  hgvsp: ENSP00000467398.1:p.Ile307Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.958A>G
  hgvsp: ENSP00000349932.4:p.Ile320Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.958A>G
  hgvsp: ENSP00000467537.1:p.Ile320Val
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22686
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile320Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-5245820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245820
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245820
    reference: chr 19
allele count: 1
allele frequency: 8.670019074041962e-6
allele num: 115340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.916G>A
  hgvsp: ENSP00000327313.2:p.Val306Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.955G>A
  hgvsp: ENSP00000467537.1:p.Val319Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.955G>A
  hgvsp: ENSP00000349932.4:p.Val319Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.916G>A
  hgvsp: ENSP00000467398.1:p.Val306Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.943G>A
  hgvsp: ENSP00000262963.6:p.Val315Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.958G>A
  hgvsp: ENSP00000361489.4:p.Val320Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1150G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.916G>A
  hgvsp: ENSP00000465443.1:p.Val306Ile
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.916G>A
  hgvsp: ENSP00000269907.3:p.Val306Ile
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val319Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-5245821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245821
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245821
    reference: chr 19
allele count: 1
allele frequency: 8.641399215360951e-6
allele num: 115722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.954C>T
  hgvsp: ENST00000357368.4:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.942C>T
  hgvsp: ENST00000262963.6:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.915C>T
  hgvsp: ENST00000592099.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1149C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.954C>T
  hgvsp: ENST00000587303.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.957C>T
  hgvsp: ENST00000372412.4:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.915C>T
  hgvsp: ENST00000353284.2:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.915C>T
  hgvsp: ENST00000588012.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.915C>T
  hgvsp: ENST00000348075.2:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly318Gly
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

19-5245841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245841
    reference: chr 19
allele count: 1
allele frequency: 8.45337120443633e-6
allele num: 118296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.895G>A
  hgvsp: ENSP00000465443.1:p.Val299Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.922G>A
  hgvsp: ENSP00000262963.6:p.Val308Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.934G>A
  hgvsp: ENSP00000467537.1:p.Val312Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.937G>A
  hgvsp: ENSP00000361489.4:p.Val313Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.895G>A
  hgvsp: ENSP00000327313.2:p.Val299Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.895G>A
  hgvsp: ENSP00000269907.3:p.Val299Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1129G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.934G>A
  hgvsp: ENSP00000349932.4:p.Val312Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.895G>A
  hgvsp: ENSP00000467398.1:p.Val299Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val312Met
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

19-5245842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245842
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245842
    reference: chr 19
allele count: 1
allele frequency: 8.449514152936206e-6
allele num: 118350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.933C>T
  hgvsp: ENST00000587303.1:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.933C>T
  hgvsp: ENST00000357368.4:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.894C>T
  hgvsp: ENST00000588012.1:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.921C>T
  hgvsp: ENST00000262963.6:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.936C>T
  hgvsp: ENST00000372412.4:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1128C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.894C>T
  hgvsp: ENST00000353284.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.894C>T
  hgvsp: ENST00000348075.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.894C>T
  hgvsp: ENST00000592099.1:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys311Cys
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

19-5245845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245845
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245845
    reference: chr 19
allele count: 4
allele frequency: 3.37490086228717e-5
allele num: 118522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.891C>T
  hgvsp: ENST00000348075.2:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.891C>T
  hgvsp: ENST00000592099.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.933C>T
  hgvsp: ENST00000372412.4:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1125C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.918C>T
  hgvsp: ENST00000262963.6:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.891C>T
  hgvsp: ENST00000353284.2:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.930C>T
  hgvsp: ENST00000587303.1:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.930C>T
  hgvsp: ENST00000357368.4:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.891C>T
  hgvsp: ENST00000588012.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25201
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr310Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-5245848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245848
    reference: chr 19
allele count: 1
allele frequency: 8.430992327796981e-6
allele num: 118610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.927C>T
  hgvsp: ENST00000587303.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.930C>T
  hgvsp: ENST00000372412.4:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1122C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.915C>T
  hgvsp: ENST00000262963.6:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.927C>T
  hgvsp: ENST00000357368.4:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.888C>T
  hgvsp: ENST00000592099.1:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.888C>T
  hgvsp: ENST00000348075.2:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.888C>T
  hgvsp: ENST00000353284.2:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.888C>T
  hgvsp: ENST00000588012.1:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr309Tyr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-5245851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245851
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245851
    reference: chr 19
allele count: 2
allele frequency: 1.684721262867059e-5
allele num: 118714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1119C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.885C>T
  hgvsp: ENST00000348075.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.885C>T
  hgvsp: ENST00000592099.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.924C>T
  hgvsp: ENST00000357368.4:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.924C>T
  hgvsp: ENST00000587303.1:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.912C>T
  hgvsp: ENST00000262963.6:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.885C>T
  hgvsp: ENST00000353284.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.927C>T
  hgvsp: ENST00000372412.4:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.885C>T
  hgvsp: ENST00000588012.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25511
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn308Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

19-5245854-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245854
    reference: chr 19
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.882C>A
  hgvsp: ENST00000348075.2:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.921C>A
  hgvsp: ENST00000357368.4:c.921C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.882C>A
  hgvsp: ENST00000588012.1:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.924C>A
  hgvsp: ENST00000372412.4:c.924C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1116C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.882C>A
  hgvsp: ENST00000353284.2:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.921C>A
  hgvsp: ENST00000587303.1:c.921C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.909C>A
  hgvsp: ENST00000262963.6:c.909C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.882C>A
  hgvsp: ENST00000592099.1:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala307Ala
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-5245856-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245856
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245856
    reference: chr 19
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.907G>T
  hgvsp: ENSP00000262963.6:p.Ala303Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.880G>T
  hgvsp: ENSP00000465443.1:p.Ala294Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.880G>T
  hgvsp: ENSP00000327313.2:p.Ala294Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.919G>T
  hgvsp: ENSP00000349932.4:p.Ala307Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.919G>T
  hgvsp: ENSP00000467537.1:p.Ala307Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.880G>T
  hgvsp: ENSP00000467398.1:p.Ala294Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.880G>T
  hgvsp: ENSP00000269907.3:p.Ala294Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.922G>T
  hgvsp: ENSP00000361489.4:p.Ala308Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1114G>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala307Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-5245869-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245869
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245869
    reference: chr 19
allele count: 2
allele frequency: 1.679853516773338e-5
allele num: 119058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.867T>C
  hgvsp: ENST00000592099.1:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.906T>C
  hgvsp: ENST00000587303.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.867T>C
  hgvsp: ENST00000353284.2:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.867T>C
  hgvsp: ENST00000348075.2:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.906T>C
  hgvsp: ENST00000357368.4:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1101T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.867T>C
  hgvsp: ENST00000588012.1:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.894T>C
  hgvsp: ENST00000262963.6:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.909T>C
  hgvsp: ENST00000372412.4:c.909T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp302Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-5245875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245875
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245875
    reference: chr 19
allele count: 2
allele frequency: 1.681067814275628e-5
allele num: 118972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.861C>T
  hgvsp: ENST00000348075.2:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.903C>T
  hgvsp: ENST00000372412.4:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.861C>T
  hgvsp: ENST00000588012.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.888C>T
  hgvsp: ENST00000262963.6:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.861C>T
  hgvsp: ENST00000353284.2:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.861C>T
  hgvsp: ENST00000592099.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.900C>T
  hgvsp: ENST00000587303.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.900C>T
  hgvsp: ENST00000357368.4:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1095C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu300Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-5245878-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245878
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245878
    reference: chr 19
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.900A>G
  hgvsp: ENST00000372412.4:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.858A>G
  hgvsp: ENST00000588012.1:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.858A>G
  hgvsp: ENST00000348075.2:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.897A>G
  hgvsp: ENST00000357368.4:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.897A>G
  hgvsp: ENST00000587303.1:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.858A>G
  hgvsp: ENST00000353284.2:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.858A>G
  hgvsp: ENST00000592099.1:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1092A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.885A>G
  hgvsp: ENST00000262963.6:c.885A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu299Glu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

19-5245884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245884
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245884
    reference: chr 19
allele count: 1
allele frequency: 8.41864224137931e-6
allele num: 118784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.852G>A
  hgvsp: ENST00000592099.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.891G>A
  hgvsp: ENST00000357368.4:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.852G>A
  hgvsp: ENST00000353284.2:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.891G>A
  hgvsp: ENST00000587303.1:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.852G>A
  hgvsp: ENST00000588012.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.894G>A
  hgvsp: ENST00000372412.4:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.879G>A
  hgvsp: ENST00000262963.6:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1086G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.852G>A
  hgvsp: ENST00000348075.2:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val297Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

19-5245898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245898
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245898
    reference: chr 19
allele count: 3
allele frequency: 2.535411243703729e-5
allele num: 118324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.838G>A
  hgvsp: ENSP00000465443.1:p.Val280Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.880G>A
  hgvsp: ENSP00000361489.4:p.Val294Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.838G>A
  hgvsp: ENSP00000467398.1:p.Val280Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1072G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.838G>A
  hgvsp: ENSP00000269907.3:p.Val280Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.838G>A
  hgvsp: ENSP00000327313.2:p.Val280Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.865G>A
  hgvsp: ENSP00000262963.6:p.Val289Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.877G>A
  hgvsp: ENSP00000467537.1:p.Val293Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.877G>A
  hgvsp: ENSP00000349932.4:p.Val293Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val293Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-5245899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245899
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245899
    reference: chr 19
allele count: 7
allele frequency: 5.919962112242481e-5
allele num: 118244
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.876C>T
  hgvsp: ENST00000357368.4:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.876C>T
  hgvsp: ENST00000587303.1:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.864C>T
  hgvsp: ENST00000262963.6:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.879C>T
  hgvsp: ENST00000372412.4:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.837C>T
  hgvsp: ENST00000348075.2:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.837C>T
  hgvsp: ENST00000592099.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.837C>T
  hgvsp: ENST00000353284.2:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.837C>T
  hgvsp: ENST00000588012.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1071C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26482
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro292Pro
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

19-5245899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245899
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245899
    reference: chr 19
allele count: 1
allele frequency: 8.457088731774973e-6
allele num: 118244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.837C>G
  hgvsp: ENST00000348075.2:c.837C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.837C>G
  hgvsp: ENST00000353284.2:c.837C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.879C>G
  hgvsp: ENST00000372412.4:c.879C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.876C>G
  hgvsp: ENST00000587303.1:c.876C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.876C>G
  hgvsp: ENST00000357368.4:c.876C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1071C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.864C>G
  hgvsp: ENST00000262963.6:c.864C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.837C>G
  hgvsp: ENST00000588012.1:c.837C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.837C>G
  hgvsp: ENST00000592099.1:c.837C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5747
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro292Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5245905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245905
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245905
    reference: chr 19
allele count: 7
allele frequency: 5.945707199402032e-5
allele num: 117732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.873C>T
  hgvsp: ENST00000372412.4:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.870C>T
  hgvsp: ENST00000587303.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.831C>T
  hgvsp: ENST00000348075.2:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.831C>T
  hgvsp: ENST00000588012.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.831C>T
  hgvsp: ENST00000592099.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.858C>T
  hgvsp: ENST00000262963.6:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.831C>T
  hgvsp: ENST00000353284.2:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1065C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.870C>T
  hgvsp: ENST00000357368.4:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25883
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp290Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

19-5245910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245910
    reference: chr 19
allele count: 6
allele frequency: 5.116921659929386e-5
allele num: 117258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.826G>A
  hgvsp: ENSP00000467398.1:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.865G>A
  hgvsp: ENSP00000349932.4:p.Asp289Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.865G>A
  hgvsp: ENSP00000467537.1:p.Asp289Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.826G>A
  hgvsp: ENSP00000327313.2:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.853G>A
  hgvsp: ENSP00000262963.6:p.Asp285Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.826G>A
  hgvsp: ENSP00000269907.3:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1060G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.868G>A
  hgvsp: ENSP00000361489.4:p.Asp290Asn
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.826G>A
  hgvsp: ENSP00000465443.1:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp289Asn
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-5245913-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245913
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245912
    reference: chr 19
allele count: 1
allele frequency: 8.545693824881643e-6
allele num: 117018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.822delC
  hgvsp: ENSP00000327313.2:p.Glu275ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.822delC
  hgvsp: ENSP00000269907.3:p.Glu275ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.822delC
  hgvsp: ENSP00000465443.1:p.Glu275ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1056delC
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.849delC
  hgvsp: ENSP00000262963.6:p.Glu284ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.864delC
  hgvsp: ENSP00000361489.4:p.Glu289ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.861delC
  hgvsp: ENSP00000467537.1:p.Glu288ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.822delC
  hgvsp: ENSP00000467398.1:p.Glu275ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.861delC
  hgvsp: ENSP00000349932.4:p.Glu288ArgfsTer41
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu288ArgfsTer41
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: CG
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-5245914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245914
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245914
    reference: chr 19
allele count: 3
allele frequency: 2.567086527929901e-5
allele num: 116864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.822C>T
  hgvsp: ENST00000348075.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.861C>T
  hgvsp: ENST00000357368.4:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.864C>T
  hgvsp: ENST00000372412.4:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.822C>T
  hgvsp: ENST00000353284.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.822C>T
  hgvsp: ENST00000588012.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.822C>T
  hgvsp: ENST00000592099.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.861C>T
  hgvsp: ENST00000587303.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.849C>T
  hgvsp: ENST00000262963.6:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1056C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro287Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-5245917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245917
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245917
    reference: chr 19
allele count: 1
allele frequency: 8.582659594555161e-6
allele num: 116514
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.858C>T
  hgvsp: ENST00000357368.4:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.861C>T
  hgvsp: ENST00000372412.4:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.819C>T
  hgvsp: ENST00000588012.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.858C>T
  hgvsp: ENST00000587303.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.819C>T
  hgvsp: ENST00000592099.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1053C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.819C>T
  hgvsp: ENST00000353284.2:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.846C>T
  hgvsp: ENST00000262963.6:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.819C>T
  hgvsp: ENST00000348075.2:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45753
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr286Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

19-5245928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245928
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245928
    reference: chr 19
allele count: 1
allele frequency: 8.819586537783108e-6
allele num: 113384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.808G>A
  hgvsp: ENSP00000327313.2:p.Glu270Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1042G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.847G>A
  hgvsp: ENSP00000467537.1:p.Glu283Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.808G>A
  hgvsp: ENSP00000465443.1:p.Glu270Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.835G>A
  hgvsp: ENSP00000262963.6:p.Glu279Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.850G>A
  hgvsp: ENSP00000361489.4:p.Glu284Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.808G>A
  hgvsp: ENSP00000269907.3:p.Glu270Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.847G>A
  hgvsp: ENSP00000349932.4:p.Glu283Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.808G>A
  hgvsp: ENSP00000467398.1:p.Glu270Lys
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu283Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

19-5245929-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245929
    reference: chr 19
allele count: 1
allele frequency: 8.822543362800628e-6
allele num: 113346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.846C>G
  hgvsp: ENST00000587303.1:c.846C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.807C>G
  hgvsp: ENST00000592099.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.807C>G
  hgvsp: ENST00000353284.2:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.807C>G
  hgvsp: ENST00000588012.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.846C>G
  hgvsp: ENST00000357368.4:c.846C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.807C>G
  hgvsp: ENST00000348075.2:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.849C>G
  hgvsp: ENST00000372412.4:c.849C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1041C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.834C>G
  hgvsp: ENST00000262963.6:c.834C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala282Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-5245929-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245929
    reference: chr 19
allele count: 1
allele frequency: 8.822543362800628e-6
allele num: 113346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.834C>T
  hgvsp: ENST00000262963.6:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1041C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.846C>T
  hgvsp: ENST00000587303.1:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.807C>T
  hgvsp: ENST00000353284.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.849C>T
  hgvsp: ENST00000372412.4:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.807C>T
  hgvsp: ENST00000592099.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.807C>T
  hgvsp: ENST00000348075.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.807C>T
  hgvsp: ENST00000588012.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.846C>T
  hgvsp: ENST00000357368.4:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala282Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

19-5245932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245932
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245932
    reference: chr 19
allele count: 2
allele frequency: 1.776451360761742e-5
allele num: 112584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.804G>A
  hgvsp: ENST00000353284.2:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.804G>A
  hgvsp: ENST00000348075.2:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.846G>A
  hgvsp: ENST00000372412.4:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.843G>A
  hgvsp: ENST00000587303.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.843G>A
  hgvsp: ENST00000357368.4:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.804G>A
  hgvsp: ENST00000588012.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1038G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.804G>A
  hgvsp: ENST00000592099.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.831G>A
  hgvsp: ENST00000262963.6:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly281Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

19-5245950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245950
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245950
    reference: chr 19
allele count: 1
allele frequency: 9.561874892428907e-6
allele num: 104582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.825C>T
  hgvsp: ENST00000587303.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.786C>T
  hgvsp: ENST00000588012.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.825C>T
  hgvsp: ENST00000357368.4:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1020C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.786C>T
  hgvsp: ENST00000348075.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.786C>T
  hgvsp: ENST00000353284.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.828C>T
  hgvsp: ENST00000372412.4:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.813C>T
  hgvsp: ENST00000262963.6:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.786C>T
  hgvsp: ENST00000592099.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr275Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/19-5245962-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245962
    reference: chr 19
allele count: 5
allele frequency: 5.247360577629452e-5
allele num: 95286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.813G>T
  hgvsp: ENST00000587303.1:c.813G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.816G>T
  hgvsp: ENST00000372412.4:c.816G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.774G>T
  hgvsp: ENST00000353284.2:c.774G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.774G>T
  hgvsp: ENST00000588012.1:c.774G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.801G>T
  hgvsp: ENST00000262963.6:c.801G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.813G>T
  hgvsp: ENST00000357368.4:c.813G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.774G>T
  hgvsp: ENST00000592099.1:c.774G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1008G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.774G>T
  hgvsp: ENST00000348075.2:c.774G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser271Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

19-5245962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245962
    reference: chr 19
allele count: 5
allele frequency: 5.247360577629452e-5
allele num: 95286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.774G>A
  hgvsp: ENST00000592099.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.816G>A
  hgvsp: ENST00000372412.4:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1008G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.774G>A
  hgvsp: ENST00000588012.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.813G>A
  hgvsp: ENST00000587303.1:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.801G>A
  hgvsp: ENST00000262963.6:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.813G>A
  hgvsp: ENST00000357368.4:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.774G>A
  hgvsp: ENST00000348075.2:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.774G>A
  hgvsp: ENST00000353284.2:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser271Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

19-5245970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245970
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245970
    reference: chr 19
allele count: 1
allele frequency: 1.131324101728663e-5
allele num: 88392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.1000G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.808G>A
  hgvsp: ENSP00000361489.4:p.Val270Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.766G>A
  hgvsp: ENSP00000269907.3:p.Val256Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.766G>A
  hgvsp: ENSP00000465443.1:p.Val256Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.793G>A
  hgvsp: ENSP00000262963.6:p.Val265Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.805G>A
  hgvsp: ENSP00000467537.1:p.Val269Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.766G>A
  hgvsp: ENSP00000467398.1:p.Val256Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.766G>A
  hgvsp: ENSP00000327313.2:p.Val256Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.805G>A
  hgvsp: ENSP00000349932.4:p.Val269Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val269Met
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-5245971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245971
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245971
    reference: chr 19
allele count: 2931
allele frequency: 3.350939772259569e-2
allele num: 87468
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.804C>T
  hgvsp: ENST00000357368.4:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.792C>T
  hgvsp: ENST00000262963.6:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.765C>T
  hgvsp: ENST00000353284.2:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.804C>T
  hgvsp: ENST00000587303.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.999C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.807C>T
  hgvsp: ENST00000372412.4:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.765C>T
  hgvsp: ENST00000592099.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.765C>T
  hgvsp: ENST00000588012.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.765C>T
  hgvsp: ENST00000348075.2:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 3.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 1.75e1
  variant carriers: 609
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 1.25e1
  variant carriers: 422
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 2.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 7.5e0
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 2.25e1
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 5.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 16112
  bin: 6.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 6.75e1
  variant carriers: 30
hgvs: p.Ala268Ala
num of homozygotes: 370
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-5245977-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245977
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245977
    reference: chr 19
allele count: 2260
allele frequency: 2.712694449779143e-2
allele num: 83312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.801C>T
  hgvsp: ENST00000372412.4:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.798C>T
  hgvsp: ENST00000587303.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.759C>T
  hgvsp: ENST00000348075.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.759C>T
  hgvsp: ENST00000353284.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.798C>T
  hgvsp: ENST00000357368.4:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.759C>T
  hgvsp: ENST00000588012.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.759C>T
  hgvsp: ENST00000592099.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.786C>T
  hgvsp: ENST00000262963.6:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.993C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 7.5e0
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 1.75e1
  variant carriers: 618
genotype depth: GenotypeDepth
  all individuals: 15422
  bin: 1.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 2.25e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 2.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 26578
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.25e1
  variant carriers: 14
hgvs: p.Cys266Cys
num of homozygotes: 19
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-5245992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5245992
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5245992
    reference: chr 19
allele count: 4
allele frequency: 5.578644947142339e-5
allele num: 71702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.978C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.744C>T
  hgvsp: ENST00000592099.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.786C>T
  hgvsp: ENST00000372412.4:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.783C>T
  hgvsp: ENST00000357368.4:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.771C>T
  hgvsp: ENST00000262963.6:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.783C>T
  hgvsp: ENST00000587303.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.744C>T
  hgvsp: ENST00000588012.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.744C>T
  hgvsp: ENST00000353284.2:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.744C>T
  hgvsp: ENST00000348075.2:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19161
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn261Asn
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 52131
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.801910024626104e-4
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

FS
type: SiteQuality
SIO_000300: 1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

DP
type: SiteQuality
SIO_000300: 1.430634e6

GenotypeQuality
all individuals: 814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.085e1

FS
type: SiteQuality
SIO_000300: 7.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

DP
type: SiteQuality
SIO_000300: 1.427214e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.305e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5415
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.249e-1

FS
type: SiteQuality
SIO_000300: 2.024e0

MQ
type: SiteQuality
SIO_000300: 5.891e1

DP
type: SiteQuality
SIO_000300: 1.426472e6

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 1.664e0

QD
type: SiteQuality
SIO_000300: 1.638e1

DP
type: SiteQuality
SIO_000300: 1.422634e6

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.854e0

MQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.703e0

DP
type: SiteQuality
SIO_000300: 1.418186e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.738e0

VQSLOD
type: SiteQuality
SIO_000300: -3.892e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.534598990295958e-5
allele num: 66158
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.410646e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.188e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513821187441339e-5
allele num: 66058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 1.404325e6

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 6.956e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 324
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.561524047470331e-4
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 8.635578583765112e-4
allele num: 66006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 3.092e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.811e0

QD
type: SiteQuality
SIO_000300: 1.166e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 1.403396e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 354
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variant carriers: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.735709326544781e-3
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.811e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.403396e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

FS
type: SiteQuality
SIO_000300: 3.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73460537727667e-4
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66006
num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

FS
type: SiteQuality
SIO_000300: 3.092e0

DP
type: SiteQuality
SIO_000300: 1.403396e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-5
allele num: 65920
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6388
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 15494
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 5.475e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 1.397804e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1255e1

DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.653e0

DP
type: SiteQuality
SIO_000300: 1.361912e6

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47118
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.622836160167862e-4
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

FS
type: SiteQuality
SIO_000300: 5.653e0

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.361912e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 550
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 702
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.6165209897821e-5
allele num: 64984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.019514249613927e-5
allele num: 14246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.039e0

DP
type: SiteQuality
SIO_000300: 1.338489e6

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

QD
type: SiteQuality
SIO_000300: 8.9e0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.094e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.314038e6

QD
type: SiteQuality
SIO_000300: 1.68e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeQuality
all individuals: 4310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13786
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.89521437466643e-5
allele num: 11242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.054e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

DP
type: SiteQuality
SIO_000300: 1.304232e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 4215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 7392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557001837262168e-5
allele num: 64226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.702e0

DP
type: SiteQuality
SIO_000300: 1.287414e6

MQRankSum
type: SiteQuality
SIO_000300: -1.272e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

FS
type: SiteQuality
SIO_000300: 4.262e0

QD
type: SiteQuality
SIO_000300: 4.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 616
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GenotypeQuality
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GenotypeQuality
all individuals: 3587
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.577486118122161e-4
allele num: 63392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.200399e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 202
bin: 9.75e1
variant carriers: 71

GenotypeQuality
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GenotypeQuality
all individuals: 2408
bin: 3.75e1
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GenotypeQuality
all individuals: 267
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 4175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.149130832570906e-5
allele num: 10930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585389054473968e-5
allele num: 63076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

African
type: Population
allele count: 69
allele frequency: 6.950040290088638e-3
allele num: 9928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.191625e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 9.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

GenotypeQuality
all individuals: 388
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 466
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GenotypeQuality
all individuals: 572
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variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 4.75e1
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GenotypeQuality
all individuals: 5795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.410219329959026e-4
allele num: 8298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

FS
type: SiteQuality
SIO_000300: 6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.5e1

DP
type: SiteQuality
SIO_000300: 1.139736e6

GenotypeQuality
all individuals: 519
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 595
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7081
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1578
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20190
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 285
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4644
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 484
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 11525
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1782
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 251
bin: 8.25e1
variant carriers: 9

South Asian
type: Population
allele count: 10
allele frequency: 8.69414014953921e-4
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.297229219143577e-3
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.85132382892057e-3
allele num: 9820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 4.763525008506295e-3
allele num: 5878
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 2.439619419370578e-4
allele num: 8198
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.889095992544269e-3
allele num: 10730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1020
allele frequency: 1.64082105398623e-2
allele num: 62164
num of homozygotes: 7

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

QD
type: SiteQuality
SIO_000300: 1.546e1

DP
type: SiteQuality
SIO_000300: 1.097644e6

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2001
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 243
bin: 9.75e1
variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5719
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1532
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.771279507906348e-4
allele num: 62102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 1.083956e6

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 1259
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
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variant carriers: 0

GenotypeQuality
all individuals: 1679
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variant carriers: 0

GenotypeQuality
all individuals: 1590
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variant carriers: 0

GenotypeQuality
all individuals: 1716
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variant carriers: 0

GenotypeQuality
all individuals: 25625
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variant carriers: 0

GenotypeQuality
all individuals: 3128
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variant carriers: 0

GenotypeQuality
all individuals: 2311
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variant carriers: 0

GenotypeQuality
all individuals: 219
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variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609632038116087e-5
allele num: 62126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.169e0

DP
type: SiteQuality
SIO_000300: 1.282432e6

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.115e1

FS
type: SiteQuality
SIO_000300: 3.121e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 3290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 5781
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variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
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variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.028397565922921e-4
allele num: 9860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62018
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.282302e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.893e0

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

GenotypeQuality
all individuals: 912
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
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variant carriers: 0

GenotypeQuality
all individuals: 619
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variant carriers: 1

GenotypeQuality
all individuals: 3385
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variant carriers: 0

GenotypeQuality
all individuals: 2735
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variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 5808
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.841732979664014e-5
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.198465963566635e-4
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.222272346458723e-5
allele num: 62068
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.150483202945237e-4
allele num: 8692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 1.746e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.049e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

DP
type: SiteQuality
SIO_000300: 1.284219e6

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
all individuals: 2276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
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GenotypeQuality
all individuals: 869
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19703136222169e-4
allele num: 8354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8708
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.826e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.612e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 1.287676e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

GenotypeQuality
all individuals: 316
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
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variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 2.75e1
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GenotypeQuality
all individuals: 1356
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
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variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 29516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.011940902651285e-3
allele num: 9882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.295523e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

FS
type: SiteQuality
SIO_000300: 5.1447e1

QD
type: SiteQuality
SIO_000300: 7.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.25e1

GenotypeQuality
all individuals: 1563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
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GenotypeQuality
all individuals: 1324
bin: 7.75e1
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GenotypeQuality
all individuals: 395
bin: 5.75e1
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GenotypeQuality
all individuals: 750
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
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variant carriers: 0

GenotypeQuality
all individuals: 1320
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variant carriers: 0

GenotypeQuality
all individuals: 2476
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GenotypeQuality
all individuals: 534
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GenotypeQuality
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GenotypeQuality
all individuals: 5914
bin: 6.75e1
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GenotypeQuality
all individuals: 1434
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.606890345802802e-5
allele num: 62232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 1.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

FS
type: SiteQuality
SIO_000300: 1.421e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e0

MQRankSum
type: SiteQuality
SIO_000300: -1.383e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.29e-2

DP
type: SiteQuality
SIO_000300: 1.306318e6

GenotypeQuality
all individuals: 533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36577
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.201434242540658e-5
allele num: 62472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 1.360361e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
all individuals: 427
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6128
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4682
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598874392427731e-5
allele num: 62544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.365719e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

QD
type: SiteQuality
SIO_000300: 3.496e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -3.711e0

FS
type: SiteQuality
SIO_000300: 4.075e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

GenotypeQuality
all individuals: 5107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6251
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1053
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.783010745830809e-5
allele num: 62722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.457755359394704e-4
allele num: 6344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

DP
type: SiteQuality
SIO_000300: 1.377176e6

FS
type: SiteQuality
SIO_000300: 5.263e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.126e1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1053
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.379835e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.189e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.21e0

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
all individuals: 1444
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1159
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 421
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 911
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38898
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 512
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 626
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1044
bin: 9.75e1
variant carriers: 631

GenotypeQuality
all individuals: 1127
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 641
allele frequency: 6.387006775607812e-2
allele num: 10036
num of homozygotes: 27

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.719298245614035e-3
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.262626262626263e-3
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.421711108302793e-4
allele num: 63304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.410538e6

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

FS
type: SiteQuality
SIO_000300: 1.122e0

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.02e-2

GenotypeQuality
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38898
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 421
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.89561481107039e-4
allele num: 63304
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 1.410538e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.281e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

GenotypeQuality
all individuals: 1030
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577287066246057e-5
allele num: 63400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.773469029654326e-5
allele num: 11398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.404666e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

FS
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.058e1

GenotypeQuality
all individuals: 981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56289072268067e-5
allele num: 63984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.680672268907563e-4
allele num: 11900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.9708853238265e-4
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

DP
type: SiteQuality
SIO_000300: 1.426224e6

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.98e-1

GenotypeQuality
all individuals: 469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55053183241852e-5
allele num: 64494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13220
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.440436e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.244e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549474728067185e-5
allele num: 64538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.229e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 1.443173e6

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 9.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13690
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

QD
type: SiteQuality
SIO_000300: 6.49e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.446103e6

VQSLOD
type: SiteQuality
SIO_000300: -1.079e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.438320885912955e-5
allele num: 15532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

DP
type: SiteQuality
SIO_000300: 1.46829e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.79e-1

FS
type: SiteQuality
SIO_000300: 1.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.556e1

DP
type: SiteQuality
SIO_000300: 1.469583e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65382
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.492839678658749e-4
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.47067e6

FS
type: SiteQuality
SIO_000300: 9.281000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.207e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528911720637251e-5
allele num: 65406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.471644e6

VQSLOD
type: SiteQuality
SIO_000300: -8.506e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.316e0

QD
type: SiteQuality
SIO_000300: 1.465e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527930570834861e-5
allele num: 65448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

DP
type: SiteQuality
SIO_000300: 1.47322e6

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e0

QD
type: SiteQuality
SIO_000300: 1.51e1

FS
type: SiteQuality
SIO_000300: 2.145e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -6.541e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.297229219143577e-5
allele num: 15880
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
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DP
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MQ
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

FS
type: SiteQuality
SIO_000300: 1.1679e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6346
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65462
num of homozygotes: 0

South Asian
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allele frequency: 6.303580433686334e-5
allele num: 15864
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10154
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: 7.83e-1

VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8592
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.250625312656328e-4
allele num: 15992
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.161e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.05008235222351e-5
allele num: 65572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

FS
type: SiteQuality
SIO_000300: 3.796e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.493429e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.526717557251908e-5
allele num: 65500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: 4.36e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526484506182262e-5
allele num: 65510
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Latino
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Other
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European (Non-Finnish)
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allele num: 65282
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 65246
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BaseQRankSum
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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allele num: 15904
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African
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Latino
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

DP
type: SiteQuality
SIO_000300: 1.492745e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340276152586005e-4
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65034
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.298850574712644e-3
allele num: 870
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.896573523833607e-4
allele num: 15818
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.19e1

FS
type: SiteQuality
SIO_000300: 3.269e0

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

BaseQRankSum
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SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

DP
type: SiteQuality
SIO_000300: 1.483156e6

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.260974254491573e-5
allele num: 64788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.474847e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.183e0

QD
type: SiteQuality
SIO_000300: 1.084e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546216408448527e-5
allele num: 64674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.119e0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.471683e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.74e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 423
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variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.64496949803363e-5
allele num: 64586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 2.23e1

FS
type: SiteQuality
SIO_000300: 1.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

DP
type: SiteQuality
SIO_000300: 1.470184e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55269859014968e-5
allele num: 64404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.784e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.593523918794021e-5
allele num: 62754
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5632
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.410491e6

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.593625498007968e-5
allele num: 62750
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8314
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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allele num: 15172
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.409494e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 4.75e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593625498007968e-5
allele num: 62750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.424242424242424e-4
allele num: 8250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.824e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 1.393684e6

QD
type: SiteQuality
SIO_000300: 1.169e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32687
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.723543605653223e-5
allele num: 58020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.926e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.042e1

DP
type: SiteQuality
SIO_000300: 1.264669e6

GenotypeQuality
all individuals: 547
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6764
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.856239395341663e-4
allele num: 12966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.118224e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

FS
type: SiteQuality
SIO_000300: 3.028e0

QD
type: SiteQuality
SIO_000300: 1.072e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2025
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22808
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 862
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.712478790683326e-5
allele num: 12966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.582075972401244e-5
allele num: 52756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.072e1

FS
type: SiteQuality
SIO_000300: 3.028e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.118224e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

GenotypeQuality
all individuals: 1937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12214
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.485e0

DP
type: SiteQuality
SIO_000300: 1.019428e6

VQSLOD
type: SiteQuality
SIO_000300: -7.301e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 2.969e0

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

QD
type: SiteQuality
SIO_000300: 7.93e0

GenotypeQuality
all individuals: 915
bin: 4.25e1
variant carriers: 31

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 398
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1834
bin: 5.25e1
variant carriers: 40

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 45

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 18

GenotypeQuality
all individuals: 2863
bin: 2.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1098
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 1992
bin: 3.75e1
variant carriers: 30

GenotypeQuality
all individuals: 920
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 3059
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2305
bin: 9.75e1
variant carriers: 2235

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 38

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 23876
bin: 2.25e1
variant carriers: 16

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

African
type: Population
allele count: 2720
allele frequency: 3.241182078169685e-1
allele num: 8392
num of homozygotes: 367

Other
type: Population
allele count: 8
allele frequency: 1.201201201201201e-2
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 8.699254349627174e-4
allele num: 48280
num of homozygotes: 0

Latino
type: Population
allele count: 155
allele frequency: 1.924987580725286e-2
allele num: 8052
num of homozygotes: 3

South Asian
type: Population
allele count: 6
allele frequency: 4.941525284137704e-4
allele num: 12142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.710000000000001e0

QD
type: SiteQuality
SIO_000300: 1.788e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 6.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.945e-1

DP
type: SiteQuality
SIO_000300: 1.016684e6

GenotypeQuality
all individuals: 2736
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 642
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1310
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 821
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 16872
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 33

GenotypeQuality
all individuals: 654
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 26

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 32

GenotypeQuality
all individuals: 403
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 850
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 284
bin: 7.75e1
variant carriers: 26

GenotypeQuality
all individuals: 2168
bin: 9.75e1
variant carriers: 2147

GenotypeQuality
all individuals: 2727
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1596
bin: 3.75e1
variant carriers: 6

European (Finnish)
type: Population
allele count: 131
allele frequency: 3.620784964068546e-2
allele num: 3618
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.706484641638225e-4
allele num: 5860
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.857142857142857e-2
allele num: 630
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1632
allele frequency: 3.503198385781136e-2
allele num: 46586
num of homozygotes: 7

African
type: Population
allele count: 32
allele frequency: 4.481792717086834e-3
allele num: 7140
num of homozygotes: 0

Latino
type: Population
allele count: 137
allele frequency: 1.798372276187976e-2
allele num: 7618
num of homozygotes: 1

South Asian
type: Population
allele count: 309
allele frequency: 2.60539629005059e-2
allele num: 11860
num of homozygotes: 9

DP
type: SiteQuality
SIO_000300: 9.51575e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

QD
type: SiteQuality
SIO_000300: 1.317e1