X-118109404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109404
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109404
    reference: chr 0
allele count: 1
allele frequency: 3.268294277216721e-5
allele num: 30597
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.661C>T
  hgvsp: ENSP00000307732.7:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.80C>T
  hgvsp: ENSP00000414519.1:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.661C>T
  hgvsp: ENSP00000435426.1:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.661C>T
  hgvsp: ENSP00000360690.3:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1398
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro221Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-118109405-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109405
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109405
    reference: chr 0
allele count: 1
allele frequency: 3.281055187348251e-5
allele num: 30478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.662C>A
  hgvsp: ENSP00000307732.7:p.Pro221Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.81C>A
  hgvsp: ENSP00000414519.1:p.Pro28Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.662C>A
  hgvsp: ENSP00000360690.3:p.Pro221Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.662C>A
  hgvsp: ENSP00000435426.1:p.Pro221Gln
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 47
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  variant carriers: 0
hgvs: p.Pro221Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-118109409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109409
    reference: chr 0
allele count: 1
allele frequency: 3.275037662933123e-5
allele num: 30534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.666G>A
  hgvsp: ENST00000304778.7:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.85G>A
  hgvsp: ENST00000439603.1:c.85G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.666G>A
  hgvsp: ENST00000371628.3:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.666G>A
  hgvsp: ENST00000481285.1:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18194
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro222Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

X-118109418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109418
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109418
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 31323
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.675C>T
  hgvsp: ENST00000371628.3:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.675C>T
  hgvsp: ENST00000304778.7:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.94C>T
  hgvsp: ENST00000439603.1:c.94C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.675C>T
  hgvsp: ENST00000481285.1:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val225Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

X-118109422-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109422
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109422
    reference: chr 0
allele count: 1
allele frequency: 3.164757263117919e-5
allele num: 31598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.679G>C
  hgvsp: ENSP00000307732.7:p.Val227Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.679G>C
  hgvsp: ENSP00000360690.3:p.Val227Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.679G>C
  hgvsp: ENSP00000435426.1:p.Val227Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.98G>C
  hgvsp: ENSP00000414519.1:p.Val34Leu
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val227Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

X-118109431-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109431
    reference: chr 0
allele count: 1
allele frequency: 3.044603440401888e-5
allele num: 32845
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.688A>T
  hgvsp: ENSP00000307732.7:p.Ser230Cys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.107A>T
  hgvsp: ENSP00000414519.1:p.Ser37Cys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.688A>T
  hgvsp: ENSP00000435426.1:p.Ser230Cys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.688A>T
  hgvsp: ENSP00000360690.3:p.Ser230Cys
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser230Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-118109432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109432
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109432
    reference: chr 0
allele count: 2
allele frequency: 6.074411541381929e-5
allele num: 32925
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.689G>A
  hgvsp: ENSP00000435426.1:p.Ser230Asn
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.689G>A
  hgvsp: ENSP00000307732.7:p.Ser230Asn
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.108G>A
  hgvsp: ENSP00000414519.1:p.Ser37Asn
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.689G>A
  hgvsp: ENSP00000360690.3:p.Ser230Asn
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser230Asn
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-118109433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109433
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109433
    reference: chr 0
allele count: 1
allele frequency: 3.063162408870918e-5
allele num: 32646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.109C>T
  hgvsp: ENST00000439603.1:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.690C>T
  hgvsp: ENST00000481285.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.690C>T
  hgvsp: ENST00000304778.7:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.690C>T
  hgvsp: ENST00000371628.3:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8588
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser230Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-118109434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109434
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109434
    reference: chr 0
allele count: 1
allele frequency: 3.000120004800192e-5
allele num: 33332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.110G>A
  hgvsp: ENSP00000414519.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.691G>A
  hgvsp: ENSP00000307732.7:p.Gly231Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.691G>A
  hgvsp: ENSP00000435426.1:p.Gly231Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.691G>A
  hgvsp: ENSP00000360690.3:p.Gly231Ser
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7531
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly231Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-118109448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109448
    reference: chr 0
allele count: 1
allele frequency: 2.654702806020866e-5
allele num: 37669
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.705G>A
  hgvsp: ENST00000371628.3:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.124G>A
  hgvsp: ENST00000439603.1:c.124G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.705G>A
  hgvsp: ENST00000481285.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.705G>A
  hgvsp: ENST00000304778.7:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 420
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  variant carriers: 0
hgvs: p.Lys235Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

X-118109454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109454
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109454
    reference: chr 0
allele count: 4
allele frequency: 1.019419950048423e-4
allele num: 39238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.711T>C
  hgvsp: ENST00000481285.1:c.711T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.130T>C
  hgvsp: ENST00000439603.1:c.130T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.711T>C
  hgvsp: ENST00000304778.7:c.711T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.711T>C
  hgvsp: ENST00000371628.3:c.711T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Phe237Phe
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

X-118109472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109472
    reference: chr 0
allele count: 1
allele frequency: 2.171081198436822e-5
allele num: 46060
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.729G>A
  hgvsp: ENST00000371628.3:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.729G>A
  hgvsp: ENST00000481285.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.729G>A
  hgvsp: ENST00000304778.7:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.148G>A
  hgvsp: ENST00000439603.1:c.148G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala243Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

X-118109476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109476
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109476
    reference: chr 0
allele count: 1
allele frequency: 2.129607939178397e-5
allele num: 46957
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.733C>T
  hgvsp: ENSP00000360690.3:p.Gln245Ter
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.733C>T
  hgvsp: ENSP00000435426.1:p.Gln245Ter
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.733C>T
  hgvsp: ENSP00000307732.7:p.Gln245Ter
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.152C>T
  hgvsp: ENSP00000414519.1:p.Gln52Ter
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 872
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln245Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS

X-118109482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109482
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109482
    reference: chr 0
allele count: 1
allele frequency: 2.082248828735034e-5
allele num: 48025
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.739C>T
  hgvsp: ENSP00000360690.3:p.Arg247Trp
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.739C>T
  hgvsp: ENSP00000307732.7:p.Arg247Trp
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.739C>T
  hgvsp: ENSP00000435426.1:p.Arg247Trp
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.158C>T
  hgvsp: ENSP00000414519.1:p.Arg54Trp
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 353
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg247Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-118109483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109483
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109483
    reference: chr 0
allele count: 1
allele frequency: 2.075506942570723e-5
allele num: 48181
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.740G>A
  hgvsp: ENSP00000360690.3:p.Arg247Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.740G>A
  hgvsp: ENSP00000307732.7:p.Arg247Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.159G>A
  hgvsp: ENSP00000414519.1:p.Arg54Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.740G>A
  hgvsp: ENSP00000435426.1:p.Arg247Gln
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 879
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  variant carriers: 0
hgvs: p.Arg247Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-118109492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109492
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109492
    reference: chr 0
allele count: 1
allele frequency: 2.018611598942248e-5
allele num: 49539
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.168G>A
  hgvsp: ENSP00000414519.1:p.Gly57Asp
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.749G>A
  hgvsp: ENSP00000360690.3:p.Gly250Asp
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.749G>A
  hgvsp: ENSP00000307732.7:p.Gly250Asp
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.749G>A
  hgvsp: ENSP00000435426.1:p.Gly250Asp
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly250Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-118109500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109500
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109500
    reference: chr 0
allele count: 10
allele frequency: 1.981492856718251e-4
allele num: 50467
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.757C>T
  hgvsp: ENST00000371628.3:c.757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.757C>T
  hgvsp: ENST00000481285.1:c.757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.176C>T
  hgvsp: ENST00000439603.1:c.176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.757C>T
  hgvsp: ENST00000304778.7:c.757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1204
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu253Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-118109509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109509
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109509
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 49749
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.185G>A
  hgvsp: ENSP00000414519.1:p.Glu63Lys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.766G>A
  hgvsp: ENSP00000307732.7:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.766G>A
  hgvsp: ENSP00000435426.1:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.766G>A
  hgvsp: ENSP00000360690.3:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu256Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-118109529-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109529
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45876
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.786A>G
  hgvsp: ENST00000371628.3:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.786A>G
  hgvsp: ENST00000481285.1:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.786A>G
  hgvsp: ENST00000304778.7:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.205A>G
  hgvsp: ENST00000439603.1:c.205A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 720
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala262Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS

X-118109557-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109557
    reference: chr 0
allele count: 6
allele frequency: 1.665510062456627e-4
allele num: 36025
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.814T>C
  hgvsp: ENST00000481285.1:c.814T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.233T>C
  hgvsp: ENST00000439603.1:c.233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.814T>C
  hgvsp: ENST00000304778.7:c.814T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.814T>C
  hgvsp: ENST00000371628.3:c.814T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
hgvs: p.Leu272Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-118109560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109560
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 34553
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817G>A
  hgvsp: ENSP00000307732.7:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236G>A
  hgvsp: ENSP00000414519.1:p.Ala80Thr
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817G>A
  hgvsp: ENSP00000360690.3:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817G>A
  hgvsp: ENSP00000435426.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23755
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29379
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala273Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

X-118109570-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109570
    reference: chr 0
allele count: 2
allele frequency: 6.978854072161351e-5
allele num: 28658
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+10A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+10A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+10A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+10A>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 49
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
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genotype quality: GenotypeQuality
  all individuals: 2609
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genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

X-118109571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109571
    reference: chr 0
allele count: 8
allele frequency: 2.856224784890571e-4
allele num: 28009
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+11C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+11C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+11C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+11C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22244
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19578
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11650
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

X-118109574-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109574
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109574
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 26246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+14G>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+14G>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+14G>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+14G>C
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23181
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-118109579-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109579
    reference: chr 0
allele count: 1
allele frequency: 4.205214465937763e-5
allele num: 23780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+19C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+19C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+19C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+19C>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 147
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
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genotype quality: GenotypeQuality
  all individuals: 21865
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-118109594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109594
    reference: chr 0
allele count: 1
allele frequency: 5.313496280552604e-5
allele num: 18820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+34G>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+34G>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+34G>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+34G>C
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

X-118109595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109595
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109595
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 18804
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+35C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+35C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+35C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+35C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD

X-118109607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109607
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109607
    reference: chr 0
allele count: 4
allele frequency: 2.518415916388592e-4
allele num: 15883
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+47A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+47A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+47A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+47A>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-118109608-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109608
    reference: chr 0
allele count: 1
allele frequency: 6.375111564452378e-5
allele num: 15686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+48T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+48T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+48T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+48T>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22122
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9857
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6749
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6667
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4710
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-118109610-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118109610
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118109610
    reference: chr 0
allele count: 1
allele frequency: 6.863889079552475e-5
allele num: 14569
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.817+50A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.236+50A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.817+50A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.817+50A>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22268
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5981
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6716
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21459
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-118112257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112257
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112257
    reference: chr 0
allele count: 21
allele frequency: 2.487680060652009e-4
allele num: 84416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-51C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-51C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-51C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-51C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-51C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-51C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-118112258-TGCTTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112258
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112252
    reference: chr 0
allele count: 133
allele frequency: 1.573312829005737e-3
allele num: 84535
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-46_818-41delTGCGCT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-46_615-41delTGCGCT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-46_-107-41delTGCGCT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-46_818-41delTGCGCT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-46_818-41delTGCGCT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-46_237-41delTGCGCT
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1985
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  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2460
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 29215
  bin: 9.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 1
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: TGCTTGC
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-118112264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112264
    reference: chr 0
allele count: 5
allele frequency: 5.929861597030325e-5
allele num: 84319
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-44C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-44C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-44C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-44C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-44C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-44C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

X-118112265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112265
    reference: chr 0
allele count: 3
allele frequency: 3.555049948451776e-5
allele num: 84387
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-43G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-43G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-43G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-43G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-43G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-43G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29117
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 532
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-118112271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112271
    reference: chr 0
allele count: 2
allele frequency: 2.361079957972777e-5
allele num: 84707
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-37G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-37G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-37G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-37G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-37G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-37G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

X-118112272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112272
    reference: chr 0
allele count: 1
allele frequency: 1.180526042404495e-5
allele num: 84708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-36G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-36G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-36G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-36G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-36G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-36G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-118112273-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112273
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112273
    reference: chr 0
allele count: 1
allele frequency: 1.180512106151649e-5
allele num: 84709
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-35C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-35C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-35C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-35C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-35C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-35C>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-118112279-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112279
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112279
    reference: chr 0
allele count: 1
allele frequency: 1.177218468203329e-5
allele num: 84946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-29A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-29A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-29A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-29A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-29A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-29A>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

X-118112285-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112285
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112286
    reference: chr 0
allele count: 2
allele frequency: 2.347335187728132e-5
allele num: 85203
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-18dupT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-18dupT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-18dupT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-18dupT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-18dupT
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-18dupT
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4969
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-118112293-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112293
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112293
    reference: chr 0
allele count: 23
allele frequency: 2.689335032681267e-4
allele num: 85523
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-15T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-15T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-15T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-15T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-15T>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-15T>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-118112295-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112295
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112295
    reference: chr 0
allele count: 3
allele frequency: 3.503731474019831e-5
allele num: 85623
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-13C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-13C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-13C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-13C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-13C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-13C>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-118112304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112304
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112304
    reference: chr 0
allele count: 5
allele frequency: 5.79575750550597e-5
allele num: 86270
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.818-4A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.818-4A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.615-4A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-107-4A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.237-4A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.818-4A>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7197
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29134
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
hgvs: c.818-4A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

X-118112318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112318
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112318
    reference: chr 0
allele count: 1
allele frequency: 1.148408879497456e-5
allele num: 87077
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.247C>T
  hgvsp: ENST00000439603.1:c.247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.828C>T
  hgvsp: ENST00000304778.7:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.625C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.828C>T
  hgvsp: ENST00000371628.3:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.828C>T
  hgvsp: ENST00000481285.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-97C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp276Asp
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

X-118112331-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112331
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112331
    reference: chr 0
allele count: 1
allele frequency: 1.142765721599415e-5
allele num: 87507
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.841A>G
  hgvsp: ENSP00000360690.3:p.Ser281Gly
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.260A>G
  hgvsp: ENSP00000414519.1:p.Ser88Gly
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.638A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-84A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.841A>G
  hgvsp: ENSP00000307732.7:p.Ser281Gly
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.841A>G
  hgvsp: ENSP00000435426.1:p.Ser281Gly
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12983
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser281Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

X-118112336-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112336
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112336
    reference: chr 0
allele count: 1462
allele frequency: 1.669178426268439e-2
allele num: 87588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.846T>C
  hgvsp: ENST00000304778.7:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-79T>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.846T>C
  hgvsp: ENST00000371628.3:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.265T>C
  hgvsp: ENST00000439603.1:c.265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.846T>C
  hgvsp: ENST00000481285.1:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.643T>C
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 8.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 9.75e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 6.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 6.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 8.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 5.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 4.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 7.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 5.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 29331
  bin: 9.75e1
  variant carriers: 1316
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 8.25e1
  variant carriers: 18
hgvs: p.Asn282Asn
num of homozygotes: 8
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-118112386-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112386
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112386
    reference: chr 0
allele count: 1
allele frequency: 1.141096593826667e-5
allele num: 87635
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.896A>T
  hgvsp: ENSP00000360690.3:p.Asp299Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.896A>T
  hgvsp: ENSP00000307732.7:p.Asp299Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.315A>T
  hgvsp: ENSP00000414519.1:p.Asp106Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.896A>T
  hgvsp: ENSP00000435426.1:p.Asp299Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-29A>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.693A>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp299Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-118112409-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112409
    reference: chr 0
allele count: 2
allele frequency: 2.29016374670789e-5
allele num: 87330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.919C>A
  hgvsp: ENSP00000307732.7:p.Arg307Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.338C>A
  hgvsp: ENSP00000414519.1:p.Arg114Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-6C>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.919C>A
  hgvsp: ENSP00000435426.1:p.Arg307Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.919C>A
  hgvsp: ENSP00000360690.3:p.Arg307Ser
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.716C>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7711
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3876
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
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genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 16
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genotype quality: GenotypeQuality
  all individuals: 95
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg307Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-118112410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112410
    reference: chr 0
allele count: 1
allele frequency: 1.145436010217289e-5
allele num: 87303
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.339G>A
  hgvsp: ENSP00000414519.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.920G>A
  hgvsp: ENSP00000307732.7:p.Arg307His
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.717G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.920G>A
  hgvsp: ENSP00000435426.1:p.Arg307His
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.920G>A
  hgvsp: ENSP00000360690.3:p.Arg307His
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28772
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg307His
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

X-118112410-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112410
    reference: chr 0
allele count: 1
allele frequency: 1.145436010217289e-5
allele num: 87303
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.920G>T
  hgvsp: ENSP00000435426.1:p.Arg307Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.339G>T
  hgvsp: ENSP00000414519.1:p.Arg114Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.920G>T
  hgvsp: ENSP00000360690.3:p.Arg307Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.920G>T
  hgvsp: ENSP00000307732.7:p.Arg307Leu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.717G>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-5G>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg307Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-118112414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112414
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112414
    reference: chr 0
allele count: 145
allele frequency: 1.662558046207648e-3
allele num: 87215
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.-1G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.924G>A
  hgvsp: ENST00000304778.7:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.343G>A
  hgvsp: ENST00000439603.1:c.343G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.924G>A
  hgvsp: ENST00000481285.1:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.924G>A
  hgvsp: ENST00000371628.3:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.721G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 12230
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5056
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 8.25e1
  variant carriers: 6
hgvs: p.Pro308Pro
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-118112415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112415
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112415
    reference: chr 0
allele count: 1
allele frequency: 1.146973137889111e-5
allele num: 87186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.722A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.1A>G
  hgvsp: ENSP00000408894.2:p.Met1?
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.925A>G
  hgvsp: ENSP00000435426.1:p.Met309Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.925A>G
  hgvsp: ENSP00000360690.3:p.Met309Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.925A>G
  hgvsp: ENSP00000307732.7:p.Met309Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.344A>G
  hgvsp: ENSP00000414519.1:p.Met116Val
  variant of: http://identifiers.org/hgnc/21152
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28750
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

X-118112457-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112457
    reference: chr 0
allele count: 2
allele frequency: 2.323690019751365e-5
allele num: 86070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.733+31G>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+31G>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.936+31G>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.12+31G>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.936+31G>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+31G>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1033
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28722
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-118112472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112472
    reference: chr 0
allele count: 1
allele frequency: 1.170548987475126e-5
allele num: 85430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.936+46G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.12+46G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.733+46G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.936+46G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+46G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+46G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 471
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genotype quality: GenotypeQuality
  all individuals: 2393
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6689
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
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genotype quality: GenotypeQuality
  all individuals: 289
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-118112474-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118112474
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118112474
    reference: chr 0
allele count: 335
allele frequency: 3.922992247698901e-3
allele num: 85394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+48T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.733+48T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.936+48T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+48T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.936+48T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.12+48T>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5548
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  variant carriers: 12
genotype depth: GenotypeDepth
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  variant carriers: 51
genotype depth: GenotypeDepth
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  variant carriers: 22
genotype depth: GenotypeDepth
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  variant carriers: 23
genotype depth: GenotypeDepth
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  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 207
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
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genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
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  variant carriers: 23
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1770
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 169
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3101
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genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 2
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-118116736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116736
    reference: chr 0
allele count: 1868
allele frequency: 2.13173871365317e-2
allele num: 87628
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.937-48G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4310G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4310G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.13-48G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.937-48G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.734-48G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 4.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 9.75e1
  variant carriers: 375
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 5.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 13035
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  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 622
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  variant carriers: 64
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 108
genotype depth: GenotypeDepth
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  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 1666
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  variant carriers: 115
genotype depth: GenotypeDepth
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  variant carriers: 74
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1550
genotype quality: GenotypeQuality
  all individuals: 206
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  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 4
num of homozygotes: 55
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-118116739-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116739
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116739
    reference: chr 0
allele count: 29
allele frequency: 3.307745828248149e-4
allele num: 87673
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.734-45A>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4313A>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4313A>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.937-45A>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.937-45A>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.13-45A>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 583
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5783
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-118116750-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116750
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116750
    reference: chr 0
allele count: 3
allele frequency: 3.421298724996008e-5
allele num: 87686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.734-34T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.13-34T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4324T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.937-34T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4324T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.937-34T>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
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genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
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genotype depth: GenotypeDepth
  all individuals: 2078
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genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
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genotype depth: GenotypeDepth
  all individuals: 13535
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2947
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 960
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2384
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2297
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-118116789-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116789
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116789
    reference: chr 0
allele count: 1
allele frequency: 1.13986093696569e-5
allele num: 87730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.942T>A
  hgvsp: ENSP00000435426.1:p.His314Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4363T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4363T>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.942T>A
  hgvsp: ENSP00000360690.3:p.His314Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.18T>A
  hgvsp: ENSP00000408894.2:p.His6Gln
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.739T>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His314Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-118116793-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116793
    reference: chr 0
allele count: 1
allele frequency: 1.13980896801696e-5
allele num: 87734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.946A>C
  hgvsp: ENST00000481285.1:c.946A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4367A>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.946A>C
  hgvsp: ENST00000371628.3:c.946A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.22A>C
  hgvsp: ENST00000422289.2:c.22A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4367A>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.743A>C
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13824
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2383
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg316Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-118116799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116799
    reference: chr 0
allele count: 1
allele frequency: 1.139744013494569e-5
allele num: 87739
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.952G>A
  hgvsp: ENSP00000435426.1:p.Ala318Thr
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.749G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.952G>A
  hgvsp: ENSP00000360690.3:p.Ala318Thr
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4373G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.28G>A
  hgvsp: ENSP00000408894.2:p.Ala10Thr
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4373G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala318Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-118116806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116806
    reference: chr 0
allele count: 2
allele frequency: 2.27956597063919e-5
allele num: 87736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.756C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.959C>T
  hgvsp: ENSP00000435426.1:p.Ala320Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4380C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.959C>T
  hgvsp: ENSP00000360690.3:p.Ala320Val
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4380C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.35C>T
  hgvsp: ENSP00000408894.2:p.Ala12Val
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17344
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala320Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-118116819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116819
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116819
    reference: chr 0
allele count: 2
allele frequency: 2.279462046956918e-5
allele num: 87740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.769A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.48A>G
  hgvsp: ENST00000422289.2:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.972A>G
  hgvsp: ENST00000481285.1:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4393A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4393A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.972A>G
  hgvsp: ENST00000371628.3:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu324Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-118116824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116824
    reference: chr 0
allele count: 2
allele frequency: 2.279436067516896e-5
allele num: 87741
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.774A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4398A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.53A>G
  hgvsp: ENSP00000408894.2:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4398A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.977A>G
  hgvsp: ENSP00000435426.1:p.Lys326Arg
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.977A>G
  hgvsp: ENSP00000360690.3:p.Lys326Arg
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25175
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys326Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-118116831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116831
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.984G>A
  hgvsp: ENST00000481285.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4405G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.984G>A
  hgvsp: ENST00000371628.3:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.60G>A
  hgvsp: ENST00000422289.2:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.781G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4405G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17406
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25174
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu328Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-118116834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116834
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116834
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4408G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.987G>A
  hgvsp: ENST00000371628.3:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.987G>A
  hgvsp: ENST00000481285.1:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.63G>A
  hgvsp: ENST00000422289.2:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4408G>A
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.784G>A
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu329Glu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-118116838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116838
    reference: chr 0
allele count: 1
allele frequency: 1.139718033758448e-5
allele num: 87741
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4412C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.788C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.991C>T
  hgvsp: ENST00000481285.1:c.991C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4412C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.991C>T
  hgvsp: ENST00000371628.3:c.991C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.67C>T
  hgvsp: ENST00000422289.2:c.67C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25174
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5851
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu331Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

X-118116841-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116841
    reference: chr 0
allele count: 1
allele frequency: 1.139705044334526e-5
allele num: 87742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4415A>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.994A>C
  hgvsp: ENST00000481285.1:c.994A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.70A>C
  hgvsp: ENST00000422289.2:c.70A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4415A>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.994A>C
  hgvsp: ENST00000371628.3:c.994A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.791A>C
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg332Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-118116861-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116861
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116861
    reference: chr 0
allele count: 1
allele frequency: 1.139899916787306e-5
allele num: 87727
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1014A>G
  hgvsp: ENST00000371628.3:c.1014A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1014A>G
  hgvsp: ENST00000481285.1:c.1014A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.811A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.90A>G
  hgvsp: ENST00000422289.2:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4435A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4435A>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val338Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

X-118116863-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116863
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116863
    reference: chr 0
allele count: 1
allele frequency: 1.139951894030072e-5
allele num: 87723
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4437C>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.92C>G
  hgvsp: ENSP00000408894.2:p.Ser31Cys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4437C>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1016C>G
  hgvsp: ENSP00000435426.1:p.Ser339Cys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1016C>G
  hgvsp: ENSP00000360690.3:p.Ser339Cys
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.813C>G
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser339Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-118116867-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116867
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116867
    reference: chr 0
allele count: 1
allele frequency: 1.140016872249709e-5
allele num: 87718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.817T>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1020T>C
  hgvsp: ENST00000371628.3:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.96T>C
  hgvsp: ENST00000422289.2:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1020T>C
  hgvsp: ENST00000481285.1:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4441T>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4441T>C
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu340Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

X-118116880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116880
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116880
    reference: chr 0
allele count: 1
allele frequency: 1.140888295626975e-5
allele num: 87651
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1033A>G
  hgvsp: ENSP00000360690.3:p.Lys345Glu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.830A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4454A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4454A>G
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.109A>G
  hgvsp: ENSP00000408894.2:p.Lys37Glu
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1033A>G
  hgvsp: ENSP00000435426.1:p.Lys345Glu
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys345Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-118116892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116892
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116892
    reference: chr 0
allele count: 1
allele frequency: 1.142387132151343e-5
allele num: 87536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4466T>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1045T>C
  hgvsp: ENSP00000435426.1:p.Cys349Arg
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.121T>C
  hgvsp: ENSP00000408894.2:p.Cys41Arg
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.842T>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4466T>C
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1045T>C
  hgvsp: ENSP00000360690.3:p.Cys349Arg
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25161
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys349Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-118116900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116900
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116900
    reference: chr 0
allele count: 1
allele frequency: 1.144701747959569e-5
allele num: 87359
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4474C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.850C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.129C>T
  hgvsp: ENST00000422289.2:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1053C>T
  hgvsp: ENST00000481285.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1053C>T
  hgvsp: ENST00000371628.3:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4474C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala351Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-118116901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116901
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116901
    reference: chr 0
allele count: 1
allele frequency: 1.14510809820447e-5
allele num: 87328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1054C>T
  hgvsp: ENSP00000435426.1:p.Gln352Ter
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1054C>T
  hgvsp: ENSP00000360690.3:p.Gln352Ter
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4475C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.130C>T
  hgvsp: ENSP00000408894.2:p.Gln44Ter
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.851C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4475C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln352Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-118116921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24118116921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24118116921
    reference: chr 0
allele count: 1
allele frequency: 1.152286135693215e-5
allele num: 86784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000435426
  ensembl transcript: ENST00000481285
  gene symbol: LONRF3
  hgvsc: ENST00000481285.1:c.1059+15C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000307732
  ensembl transcript: ENST00000304778
  gene symbol: LONRF3
  hgvsc: ENST00000304778.7:c.936+4495C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000414519
  ensembl transcript: ENST00000439603
  gene symbol: LONRF3
  hgvsc: ENST00000439603.1:c.355+4495C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000360690
  ensembl transcript: ENST00000371628
  gene symbol: LONRF3
  hgvsc: ENST00000371628.3:c.1059+15C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl transcript: ENST00000472173
  gene symbol: LONRF3
  hgvsc: ENST00000472173.1:n.856+15C>T
  variant of: http://identifiers.org/hgnc/21152
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175556
  ensembl protein: ENSP00000408894
  ensembl transcript: ENST00000422289
  gene symbol: LONRF3
  hgvsc: ENST00000422289.2:c.135+15C>T
  variant of: http://identifiers.org/hgnc/21152
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.812250815512867e-4
allele num: 5518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2365
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 1.271e0

BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 4.96116e5

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.088e0

QD
type: SiteQuality
SIO_000300: 9.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.249893752656184e-4
allele num: 2353
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 907
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.74e-1

DP
type: SiteQuality
SIO_000300: 4.98665e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2417
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2361
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 203
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.821161901293025e-4
allele num: 5491
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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DP
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SIO_000300: 5.09749e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.587e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16027
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2473
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.394e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.33633e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.188118811881188e-5
allele num: 16160
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2499
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 931
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3699
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.083e1

MQRankSum
type: SiteQuality
SIO_000300: -1.322e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

DP
type: SiteQuality
SIO_000300: 5.44059e5

VQSLOD
type: SiteQuality
SIO_000300: -1.944e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5575
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 969
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3861
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 225
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.937889674009857e-5
allele num: 16841
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.25e0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.70184e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.635e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5571
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2763
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 229
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.183852255238546e-4
allele num: 16894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2625
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3873
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.975e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

DP
type: SiteQuality
SIO_000300: 5.72581e5

QD
type: SiteQuality
SIO_000300: 1.234e1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 5.762e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16769
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.650967506389193e-4
allele num: 2739
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2609
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 947
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
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MQRankSum
type: SiteQuality
SIO_000300: -1.27e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 5.75838e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17147
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2675
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Latino
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allele count: 1
allele frequency: 2.54323499491353e-4
allele num: 3932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 4609
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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allele num: 5717
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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FS
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MQ
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
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South Asian
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allele num: 5755
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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FS
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QD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 24849
num of homozygotes: 0

Latino
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Other
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

QD
type: SiteQuality
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.92695857058708e-5
allele num: 25465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6329
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4225
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.92872e5

FS
type: SiteQuality
SIO_000300: 1.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17435
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5579
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.905334687182692e-5
allele num: 25606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.936e0

FS
type: SiteQuality
SIO_000300: 3.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 7.90805e5

QD
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

GenotypeQuality
all individuals: 1227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.122691572914456e-4
allele num: 4711
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.08235e5

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

QD
type: SiteQuality
SIO_000300: 1.017e1

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
type: SiteQuality
SIO_000300: 2.107e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 405
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 10
allele frequency: 2.219755826859046e-3
allele num: 4505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 313
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4905
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5101
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6709
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27202
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

QD
type: SiteQuality
SIO_000300: 1.303e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.177e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

DP
type: SiteQuality
SIO_000300: 8.18644e5

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

GenotypeQuality
all individuals: 64
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4619
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1757
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6671
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.196e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.034e0

DP
type: SiteQuality
SIO_000300: 8.05027e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4221
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4707
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

DP
type: SiteQuality
SIO_000300: 7.29178e5

QD
type: SiteQuality
SIO_000300: 2.366e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20222
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.513240857503153e-3
allele num: 3965
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

MQ
type: SiteQuality
SIO_000300: 5.845e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 4.502e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

DP
type: SiteQuality
SIO_000300: 5.55708e5

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 4948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 231
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1219
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4551
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.34453e5

VQSLOD
type: SiteQuality
SIO_000300: -1.338e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.567e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.221597849987784e-4
allele num: 16372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1605
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3797
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.454e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -4.717e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

DP
type: SiteQuality
SIO_000300: 4.57789e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1539
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3011
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 3.129890453834116e-3
allele num: 2556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 957
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 2.61e0

DP
type: SiteQuality
SIO_000300: 4.52186e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2839
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1400
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2387
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

FS
type: SiteQuality
SIO_000300: 1.2632e1

DP
type: SiteQuality
SIO_000300: 4.37002e5

VQSLOD
type: SiteQuality
SIO_000300: -1.675e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13915
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3049
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 793
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 4.697040864255519e-4
allele num: 2129
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 2.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.1293e5

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.36e-2

QD
type: SiteQuality
SIO_000300: 2.937e1

VQSLOD
type: SiteQuality
SIO_000300: -3.111e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11171
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.361098996947231e-4
allele num: 2293
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.99e-2

QD
type: SiteQuality
SIO_000300: 1.067e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -1.013e0

DP
type: SiteQuality
SIO_000300: 3.6338e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 817
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.94e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.725e1

DP
type: SiteQuality
SIO_000300: 3.63188e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 10338
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 9.803921568627451e-3
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.111728738187882e-3
allele num: 1799
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.04384133611691e-4
allele num: 9580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.43e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 3.45044e5

QD
type: SiteQuality
SIO_000300: 1.027e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 2.861e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

GenotypeQuality
all individuals: 1519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9465
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1899
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.716049382716049e-4
allele num: 1296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 655
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.448e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.44826e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.894e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeQuality
all individuals: 1607
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1585
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1185
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 465
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.134429948950652e-4
allele num: 8815
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 93
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.74e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.447e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -1.882e0

DP
type: SiteQuality
SIO_000300: 3.44098e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

GenotypeQuality
all individuals: 7924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.548853016142736e-3
allele num: 8239
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.764e1

FS
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

DP
type: SiteQuality
SIO_000300: 3.000255e6

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.41e-2

GenotypeQuality
all individuals: 341
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 7994
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2944
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 372
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 612
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1552
bin: 8.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47319
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074922068150059e-4
allele num: 9303
num of homozygotes: 0

South Asian
type: Population
allele count: 132
allele frequency: 1.664564943253468e-2
allele num: 7930
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 4.245e1

DP
type: SiteQuality
SIO_000300: 3.000287e6

FS
type: SiteQuality
SIO_000300: 4.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.458e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29128
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.20799293442261e-4
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07515320933233e-4
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.641660597232338e-4
allele num: 8238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7735
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47302
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.175e0

DP
type: SiteQuality
SIO_000300: 2.996326e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

QD
type: SiteQuality
SIO_000300: 1.2e1

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4851
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.63901018922853e-4
allele num: 8244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7773
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 4.071e0

DP
type: SiteQuality
SIO_000300: 3.002955e6

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.784e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29141
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.22225975342003e-5
allele num: 47368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 2.004e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.05e-2

DP
type: SiteQuality
SIO_000300: 3.006055e6

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: -1.734e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeQuality
all individuals: 296
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4904
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variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.110951616988939e-5
allele num: 47372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8261
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 3.006704e6

QD
type: SiteQuality
SIO_000300: 1.031e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 9.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
all individuals: 2930
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512172992590352e-4
allele num: 6613
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47365
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.127e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.425e0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 3.007638e6

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29141
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2940
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8181
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.205254911413764e-4
allele num: 8297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.013064e6

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 3.181e1

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29139
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47451
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.395783421178726e-4
allele num: 8348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

FS
type: SiteQuality
SIO_000300: 9.419999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 3.020082e6

GenotypeQuality
all individuals: 29141
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2369
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.624671916010499e-3
allele num: 8382
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 2.1e1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 3.02666e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.853e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

GenotypeQuality
all individuals: 10445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29133
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.311139160618491e-5
allele num: 47535
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.284e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

DP
type: SiteQuality
SIO_000300: 3.028604e6

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2949
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.729250413809411e-4
allele num: 8458
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9051
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47677
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.433e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

FS
type: SiteQuality
SIO_000300: 1.104e0

DP
type: SiteQuality
SIO_000300: 3.0404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

GenotypeQuality
all individuals: 29128
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5124
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2946
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.040907671489539e-4
allele num: 9607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.57e-2

DP
type: SiteQuality
SIO_000300: 3.056257e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 3.058e1

GenotypeQuality
all individuals: 2446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47939
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175778953556731e-4
allele num: 8505
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.164e-1

FS
type: SiteQuality
SIO_000300: 1.887e0

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

QD
type: SiteQuality
SIO_000300: 3.044e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

DP
type: SiteQuality
SIO_000300: 3.063965e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5129
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1526
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 13000
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2361
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3450
bin: 7.75e1
variant carriers: 18

Latino
type: Population
allele count: 31
allele frequency: 3.326537182101084e-3
allele num: 9319
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 202
allele frequency: 4.46113074204947e-2
allele num: 4528
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 966
allele frequency: 2.014472504327154e-2
allele num: 47953
num of homozygotes: 6

South Asian
type: Population
allele count: 214
allele frequency: 2.137435077906512e-2
allele num: 10012
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 3.014318010550113e-4
allele num: 6635
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 3.407755581668625e-3
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.852614896988907e-2
allele num: 631
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.077804e6

VQSLOD
type: SiteQuality
SIO_000300: 3.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.525e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

QD
type: SiteQuality
SIO_000300: 1.963e1

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13521
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28781
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5186
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08494047494944e-5
allele num: 47963
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.441e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

DP
type: SiteQuality
SIO_000300: 3.041021e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 2.746e1

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28774
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073767851390529e-4
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47887
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9823
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 2.025e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

FS
type: SiteQuality
SIO_000300: 1.455e0

MQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

DP
type: SiteQuality
SIO_000300: 3.029558e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073767851390529e-4
allele num: 9313
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47883
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9801
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.779e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

DP
type: SiteQuality
SIO_000300: 3.02872e6

QD
type: SiteQuality
SIO_000300: 1.914e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 5.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28772
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088423866507947e-5
allele num: 47883
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9801
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

DP
type: SiteQuality
SIO_000300: 3.02872e6

FS
type: SiteQuality
SIO_000300: 5.13e0

VQSLOD
type: SiteQuality
SIO_000300: -8.779e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

QD
type: SiteQuality
SIO_000300: 1.914e1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28819
bin: 9.75e1
variant carriers: 111

GenotypeQuality
all individuals: 2313
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3405
bin: 7.75e1
variant carriers: 5

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 111
allele frequency: 1.138695116947066e-2
allele num: 9748
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.819880155093408e-3
allele num: 8511
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.253866087101897e-4
allele num: 47852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.221303554171588e-4
allele num: 9313
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.791e1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 2.042e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.635e-1

DP
type: SiteQuality
SIO_000300: 3.027245e6

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089864158829676e-5
allele num: 47850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 3.022209e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.294e1

GenotypeQuality
all individuals: 4653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.202298657365579e-5
allele num: 47593
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.977928e6

FS
type: SiteQuality
SIO_000300: 1.7545e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

QD
type: SiteQuality
SIO_000300: 1.47e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.536e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

GenotypeQuality
all individuals: 343
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078981441519206e-4
allele num: 9268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8455
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.957067e6

FS
type: SiteQuality
SIO_000300: 5.409e0

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.502e0

QD
type: SiteQuality
SIO_000300: 1.104e1

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 251
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2024
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 348
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1112
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1209
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4000
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1464
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 2.480319206297854e-3
allele num: 9273
num of homozygotes: 0

African
type: Population
allele count: 309
allele frequency: 3.657237542904486e-2
allele num: 8449
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.214785467419708e-5
allele num: 47452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.642036124794745e-3
allele num: 609
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 6.899999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.779999999999999e0

DP
type: SiteQuality
SIO_000300: 2.958824e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.625e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3350
bin: 7.75e1
variant carriers: 25

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 5677
bin: 6.75e1
variant carriers: 29

GenotypeQuality
all individuals: 2815
bin: 8.25e1
variant carriers: 31

African
type: Population
allele count: 532
allele frequency: 6.283959366879281e-2
allele num: 8466
num of homozygotes: 11

Other
type: Population
allele count: 6
allele frequency: 9.478672985781991e-3
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 395
allele frequency: 3.90625e-2
allele num: 10112
num of homozygotes: 3

Latino
type: Population
allele count: 34
allele frequency: 3.649243318664806e-3
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 5.004483182851305e-4
allele num: 47957
num of homozygotes: 0

East Asian
type: Population
allele count: 877
allele frequency: 1.326175714501739e-1
allele num: 6613
num of homozygotes: 41

DP
type: SiteQuality
SIO_000300: 2.75631e6

QD
type: SiteQuality
SIO_000300: 1.71e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.413e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.803e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

FS
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.558e0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15916
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25208
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 2292
bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 26
allele frequency: 2.569677801937142e-3
allele num: 10118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.254821424848321e-5
allele num: 47963
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

FS
type: SiteQuality
SIO_000300: 6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.097e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 2.123e1

QD
type: SiteQuality
SIO_000300: 1.895e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.716904e6

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25181
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.536484734174231e-4
allele num: 8483
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47967
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 2.719384e6

FS
type: SiteQuality
SIO_000300: 3.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073191672032625e-4
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.608e0

QD
type: SiteQuality
SIO_000300: 1.439e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.724594e6

VQSLOD
type: SiteQuality
SIO_000300: -8.157e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.977e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25176
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47983
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073191672032625e-4
allele num: 9318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.241e1

MQRankSum
type: SiteQuality
SIO_000300: -1.501e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 5.554e0

DP
type: SiteQuality
SIO_000300: 2.724686e6

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08389772229979e-5
allele num: 47987
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.061e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.683e0

FS
type: SiteQuality
SIO_000300: 4.511e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.724886e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 9.16e0

GenotypeQuality
all individuals: 3349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.349900129244507e-4
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.554e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.354e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 2.725181e6

QD
type: SiteQuality
SIO_000300: 1.353e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

FS
type: SiteQuality
SIO_000300: 1.181e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17383
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
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variant carriers: 0

GenotypeQuality
all individuals: 25175
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.14569252226156e-4
allele num: 9321
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

DP
type: SiteQuality
SIO_000300: 2.725353e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.975894092076665e-4
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.363e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.725302e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.951e0

MQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 2.08e1

VQSLOD
type: SiteQuality
SIO_000300: -2.86e-2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3347
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2380
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variant carriers: 0

GenotypeQuality
all individuals: 2299
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083941149501938e-5
allele num: 47986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.427e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e0

DP
type: SiteQuality
SIO_000300: 2.725356e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
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allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
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MQ
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VQSLOD
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DP
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QD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.08389772229979e-5
allele num: 47987
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10121
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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FS
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DP
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele num: 10121
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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Other
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allele num: 633
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.08389772229979e-5
allele num: 47987
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 8.399999999999999e-3

DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 9.894132779261898e-5
allele num: 10107
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.72454e6

QD
type: SiteQuality
SIO_000300: 3.147e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47983
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.895111814763506e-5
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.078e1

DP
type: SiteQuality
SIO_000300: 2.724243e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.101e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.943323058566172e-5
allele num: 10057
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.720956e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.198e-1

QD
type: SiteQuality
SIO_000300: 3.218e1

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47948
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

FS
type: SiteQuality
SIO_000300: 1.143e0

VQSLOD
type: SiteQuality
SIO_000300: -2.902e-1

DP
type: SiteQuality
SIO_000300: 2.713842e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25157
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16541
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.015331505736623e-4
allele num: 9849
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

QD
type: SiteQuality
SIO_000300: 2.577e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.65e0

DP
type: SiteQuality
SIO_000300: 2.704761e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088205813564985e-5
allele num: 47888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.995e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.70345e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.667e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1