19-47177908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177908
    reference: chr 19
allele count: 2
allele frequency: 1.657632569164719e-5
allele num: 120654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2539T>C
  hgvsp: ENSP00000470804.1:p.Trp847Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1377T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2509T>C
  hgvsp: ENSP00000393978.1:p.Trp837Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.711T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1391T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2038T>C
  hgvsp: ENSP00000469106.1:p.Trp680Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2489A>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2509T>C
  hgvsp: ENSP00000291281.3:p.Trp837Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*569T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2038T>C
  hgvsp: ENSP00000472744.1:p.Trp680Arg
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp837Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

19-47177910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177910
    reference: chr 19
allele count: 2
allele frequency: 1.657522666622466e-5
allele num: 120662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2537G>A
  hgvsp: ENSP00000470804.1:p.Arg846His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.709G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1389G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2507G>A
  hgvsp: ENSP00000291281.3:p.Arg836His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2036G>A
  hgvsp: ENSP00000469106.1:p.Arg679His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2507G>A
  hgvsp: ENSP00000393978.1:p.Arg836His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*567G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2036G>A
  hgvsp: ENSP00000472744.1:p.Arg679His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2487C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1375G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg836His
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-47177911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177911
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177911
    reference: chr 19
allele count: 3
allele frequency: 2.485665992774998e-5
allele num: 120692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*566C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2536C>T
  hgvsp: ENSP00000470804.1:p.Arg846Cys
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2506C>T
  hgvsp: ENSP00000393978.1:p.Arg836Cys
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.708C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2506C>T
  hgvsp: ENSP00000291281.3:p.Arg836Cys
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2035C>T
  hgvsp: ENSP00000472744.1:p.Arg679Cys
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1374C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2035C>T
  hgvsp: ENSP00000469106.1:p.Arg679Cys
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2486G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1388C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg836Cys
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

19-47177912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177912
    reference: chr 19
allele count: 4
allele frequency: 3.313617310336829e-5
allele num: 120714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1387G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.707G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2505G>A
  hgvsp: ENST00000433867.1:c.2505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2505G>A
  hgvsp: ENST00000291281.4:c.2505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2034G>A
  hgvsp: ENST00000601806.1:c.2034G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*565G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2535G>A
  hgvsp: ENST00000595515.1:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1373G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2034G>A
  hgvsp: ENST00000600194.1:c.2034G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2485C>T
  variant of: http://identifiers.org/hgnc/44120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val835Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

19-47177913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177913
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177913
    reference: chr 19
allele count: 121215
allele frequency: 9.995959229449796e-1
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2033T>C
  hgvsp: ENSP00000469106.1:p.Val678Ala
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2534T>C
  hgvsp: ENSP00000470804.1:p.Val845Ala
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1372T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*564T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2504T>C
  hgvsp: ENSP00000393978.1:p.Val835Ala
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1386T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.706T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2504T>C
  hgvsp: ENSP00000291281.3:p.Val835Ala
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2484A>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2033T>C
  hgvsp: ENSP00000472744.1:p.Val678Ala
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.25e1
  variant carriers: 1631
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 7.25e1
  variant carriers: 2793
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.75e1
  variant carriers: 6628
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.75e1
  variant carriers: 1182
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 6.75e1
  variant carriers: 3675
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 7.75e1
  variant carriers: 2045
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 5.25e1
  variant carriers: 6340
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 2.75e1
  variant carriers: 3041
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 3.25e1
  variant carriers: 4701
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 5.75e1
  variant carriers: 5221
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 6457
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 9.75e1
  variant carriers: 3259
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.25e1
  variant carriers: 866
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 6.25e1
  variant carriers: 4444
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 3.75e1
  variant carriers: 5932
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 8.25e1
  variant carriers: 1548
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Val835Ala
num of homozygotes: 60583
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

19-47177914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177914
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177914
    reference: chr 19
allele count: 5
allele frequency: 4.136812668575116e-5
allele num: 120866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1371G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2032G>A
  hgvsp: ENSP00000469106.1:p.Val678Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*563G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2503G>A
  hgvsp: ENSP00000393978.1:p.Val835Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2503G>A
  hgvsp: ENSP00000291281.3:p.Val835Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2032G>A
  hgvsp: ENSP00000472744.1:p.Val678Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2533G>A
  hgvsp: ENSP00000470804.1:p.Val845Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2483C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1385G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.705G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12930
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32184
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val835Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-47177915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177915
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177915
    reference: chr 19
allele count: 82
allele frequency: 6.784821857055387e-4
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2502C>T
  hgvsp: ENST00000291281.4:c.2502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2031C>T
  hgvsp: ENST00000601806.1:c.2031C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*562C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2031C>T
  hgvsp: ENST00000600194.1:c.2031C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1384C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2532C>T
  hgvsp: ENST00000595515.1:c.2532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2502C>T
  hgvsp: ENST00000433867.1:c.2502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.704C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1370C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2482G>A
  variant of: http://identifiers.org/hgnc/44120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 32191
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp834Asp
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

19-47177917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177917
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177917
    reference: chr 19
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2480C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2530G>A
  hgvsp: ENSP00000470804.1:p.Asp844Asn
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2029G>A
  hgvsp: ENSP00000472744.1:p.Asp677Asn
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*560G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2500G>A
  hgvsp: ENSP00000393978.1:p.Asp834Asn
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.702G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2500G>A
  hgvsp: ENSP00000291281.3:p.Asp834Asn
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1368G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1382G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2029G>A
  hgvsp: ENSP00000469106.1:p.Asp677Asn
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp834Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-47177918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177918
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177918
    reference: chr 19
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2499C>T
  hgvsp: ENST00000291281.4:c.2499C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2499C>T
  hgvsp: ENST00000433867.1:c.2499C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2529C>T
  hgvsp: ENST00000595515.1:c.2529C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2479G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2028C>T
  hgvsp: ENST00000601806.1:c.2028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1381C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*559C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.701C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2028C>T
  hgvsp: ENST00000600194.1:c.2028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1367C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp833Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-47177918-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177918
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177918
    reference: chr 19
allele count: 2
allele frequency: 1.655190677966102e-5
allele num: 120832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.701C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2028C>G
  hgvsp: ENSP00000469106.1:p.Asp676Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*559C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2499C>G
  hgvsp: ENSP00000393978.1:p.Asp833Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2028C>G
  hgvsp: ENSP00000472744.1:p.Asp676Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2479G>C
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2529C>G
  hgvsp: ENSP00000470804.1:p.Asp843Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2499C>G
  hgvsp: ENSP00000291281.3:p.Asp833Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1381C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1367C>G
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp833Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-47177939-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177939
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177939
    reference: chr 19
allele count: 2
allele frequency: 1.658897496723677e-5
allele num: 120562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2478A>G
  hgvsp: ENST00000291281.4:c.2478A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1360A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2478A>G
  hgvsp: ENST00000433867.1:c.2478A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2458T>C
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2007A>G
  hgvsp: ENST00000601806.1:c.2007A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2508A>G
  hgvsp: ENST00000595515.1:c.2508A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*538A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1346A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.680A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2007A>G
  hgvsp: ENST00000600194.1:c.2007A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg826Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

19-47177940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177940
    reference: chr 19
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.679G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.2006G>A
  hgvsp: ENSP00000472744.1:p.Arg669Gln
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2507G>A
  hgvsp: ENSP00000470804.1:p.Arg836Gln
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2477G>A
  hgvsp: ENSP00000291281.3:p.Arg826Gln
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.2006G>A
  hgvsp: ENSP00000469106.1:p.Arg669Gln
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1359G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2477G>A
  hgvsp: ENSP00000393978.1:p.Arg826Gln
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1345G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*537G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2457C>T
  variant of: http://identifiers.org/hgnc/44120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg826Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-47177947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177947
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177947
    reference: chr 19
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1352G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1999G>A
  hgvsp: ENSP00000469106.1:p.Gly667Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1999G>A
  hgvsp: ENSP00000472744.1:p.Gly667Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2470G>A
  hgvsp: ENSP00000393978.1:p.Gly824Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2450C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*530G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2500G>A
  hgvsp: ENSP00000470804.1:p.Gly834Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2470G>A
  hgvsp: ENSP00000291281.3:p.Gly824Arg
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1338G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.672G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8881
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly824Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

19-47177955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177955
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177955
    reference: chr 19
allele count: 1
allele frequency: 8.348220994106157e-6
allele num: 119786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.664G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2462G>A
  hgvsp: ENSP00000393978.1:p.Gly821Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*522G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2492G>A
  hgvsp: ENSP00000470804.1:p.Gly831Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2442C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1991G>A
  hgvsp: ENSP00000469106.1:p.Gly664Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1344G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1330G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1991G>A
  hgvsp: ENSP00000472744.1:p.Gly664Glu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2462G>A
  hgvsp: ENSP00000291281.3:p.Gly821Glu
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly821Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-47177960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177960
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177960
    reference: chr 19
allele count: 7
allele frequency: 5.86451299408522e-5
allele num: 119362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1986G>A
  hgvsp: ENST00000600194.1:c.1986G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2487G>A
  hgvsp: ENST00000595515.1:c.2487G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2437C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2457G>A
  hgvsp: ENST00000291281.4:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1339G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.659G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*517G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2457G>A
  hgvsp: ENST00000433867.1:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1986G>A
  hgvsp: ENST00000601806.1:c.1986G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1325G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu819Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-47177962-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177962
    reference: chr 19
allele count: 2
allele frequency: 1.679571373385512e-5
allele num: 119078
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2455C>A
  hgvsp: ENSP00000393978.1:p.Leu819Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2485C>A
  hgvsp: ENSP00000470804.1:p.Leu829Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*515C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1337C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2455C>A
  hgvsp: ENSP00000291281.3:p.Leu819Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1984C>A
  hgvsp: ENSP00000472744.1:p.Leu662Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1323C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1984C>A
  hgvsp: ENSP00000469106.1:p.Leu662Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.657C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2435G>T
  variant of: http://identifiers.org/hgnc/44120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11435
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8404
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu819Met
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/19-47177967-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177967
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177967
    reference: chr 19
allele count: 2
allele frequency: 1.687393483286368e-5
allele num: 118526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2450G>T
  hgvsp: ENSP00000291281.3:p.Arg817Leu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*510G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2480G>T
  hgvsp: ENSP00000470804.1:p.Arg827Leu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2450G>T
  hgvsp: ENSP00000393978.1:p.Arg817Leu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2430C>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1332G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1979G>T
  hgvsp: ENSP00000472744.1:p.Arg660Leu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1318G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1979G>T
  hgvsp: ENSP00000469106.1:p.Arg660Leu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.652G>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30537
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg817Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

19-47177972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177972
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177972
    reference: chr 19
allele count: 1
allele frequency: 8.539126276599378e-6
allele num: 117108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*505C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2425G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1327C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.647C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2475C>T
  hgvsp: ENST00000595515.1:c.2475C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1313C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2445C>T
  hgvsp: ENST00000433867.1:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1974C>T
  hgvsp: ENST00000601806.1:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1974C>T
  hgvsp: ENST00000600194.1:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2445C>T
  hgvsp: ENST00000291281.4:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11054
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7590
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp815Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-47177981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177981
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177981
    reference: chr 19
allele count: 1
allele frequency: 8.701402666109778e-6
allele num: 114924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1965G>A
  hgvsp: ENST00000601806.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2436G>A
  hgvsp: ENST00000433867.1:c.2436G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*496G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1304G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2416C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2436G>A
  hgvsp: ENST00000291281.4:c.2436G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2466G>A
  hgvsp: ENST00000595515.1:c.2466G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1965G>A
  hgvsp: ENST00000600194.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1318G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.638G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr812Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

19-47177982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177982
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177982
    reference: chr 19
allele count: 1
allele frequency: 8.72691730373163e-6
allele num: 114588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2465C>T
  hgvsp: ENSP00000470804.1:p.Thr822Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2415G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1303C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2435C>T
  hgvsp: ENSP00000291281.3:p.Thr812Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1964C>T
  hgvsp: ENSP00000469106.1:p.Thr655Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2435C>T
  hgvsp: ENSP00000393978.1:p.Thr812Met
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1317C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.637C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*495C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1964C>T
  hgvsp: ENSP00000472744.1:p.Thr655Met
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6635
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr812Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

19-47177984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177984
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177984
    reference: chr 19
allele count: 1
allele frequency: 8.9355922510544e-6
allele num: 111912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1301G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1962G>A
  hgvsp: ENST00000600194.1:c.1962G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*493G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2433G>A
  hgvsp: ENST00000291281.4:c.2433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2463G>A
  hgvsp: ENST00000595515.1:c.2463G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1315G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2433G>A
  hgvsp: ENST00000433867.1:c.2433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2413C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.635G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1962G>A
  hgvsp: ENST00000601806.1:c.1962G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9972
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln811Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

19-47177990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177990
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177990
    reference: chr 19
allele count: 32
allele frequency: 2.933519122877782e-4
allele num: 109084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*487G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2427G>A
  hgvsp: ENST00000291281.4:c.2427G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1956G>A
  hgvsp: ENST00000601806.1:c.1956G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.629G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1309G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2457G>A
  hgvsp: ENST00000595515.1:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2407C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1295G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1956G>A
  hgvsp: ENST00000600194.1:c.1956G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2427G>A
  hgvsp: ENST00000433867.1:c.2427G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23090
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2427G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-47177997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177997
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177997
    reference: chr 19
allele count: 5
allele frequency: 4.768444342717632e-5
allele num: 104856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-5C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2400G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-5C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2425-5C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-47177997-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177997
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177997
    reference: chr 19
allele count: 1
allele frequency: 9.536888685435264e-6
allele num: 104856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2400G>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-5C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-5C>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2425-5C>A
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/19-47177998-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47177998
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47177998
    reference: chr 19
allele count: 1
allele frequency: 9.6324266009093e-6
allele num: 103816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2399C>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-6G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-6G>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2425-6G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-47178000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178000
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178000
    reference: chr 19
allele count: 1
allele frequency: 9.71307574256464e-6
allele num: 102954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-8G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2397C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-8G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2425-8G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-47178001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178001
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178001
    reference: chr 19
allele count: 1
allele frequency: 9.829555507499951e-6
allele num: 101734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2396G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-9C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-9C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

19-47178014-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178014
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178014
    reference: chr 19
allele count: 2
allele frequency: 2.101811761738619e-5
allele num: 95156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2383T>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-22A>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-22A>C
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26477
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-47178040-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178040
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178040
    reference: chr 19
allele count: 6
allele frequency: 7.980421366248138e-5
allele num: 75184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2357T>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-48A>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-48A>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23219
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17582
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-47178043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178043
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178043
    reference: chr 19
allele count: 1
allele frequency: 1.369900545220417e-5
allele num: 72998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2354C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-51G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-51G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9641
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6459
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

19-47178044-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178044
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178044
    reference: chr 19
allele count: 11
allele frequency: 1.50680803265664e-4
allele num: 73002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1307-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2455-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2353T>C
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2425-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2425-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*485-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1954-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.627-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1954-52A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1293-52A>G
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23029
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19578
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-47178242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178242
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178242
    reference: chr 19
allele count: 2
allele frequency: 4.769399532598846e-5
allele num: 41934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1306+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1953+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.626+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2424+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2155C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*484+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1953+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2454+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2424+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1292+48G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8368
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-47178252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178252
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178252
    reference: chr 19
allele count: 1
allele frequency: 2.315672471285661e-5
allele num: 43184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.626+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1306+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1292+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1953+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*484+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2454+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2145C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2424+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2424+38G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1953+38G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

19-47178254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178254
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178254
    reference: chr 19
allele count: 1
allele frequency: 2.281230039237157e-5
allele num: 43836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1953+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1292+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*484+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.626+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2424+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2424+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1306+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1953+36T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2143A>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2454+36T>C
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

19-47178278-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178278
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178278
    reference: chr 19
allele count: 6
allele frequency: 1.035911602209945e-4
allele num: 57920
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2424+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1953+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2454+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.626+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1953+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1306+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*484+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1292+12G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2119C>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2424+12G>C
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28348
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7784
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11543
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-47178280-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178280
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178280
    reference: chr 19
allele count: 1
allele frequency: 1.68084176555619e-5
allele num: 59494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2454+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1953+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1292+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1953+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2117C>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2424+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.626+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1306+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2424+10G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*484+10G>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-47178280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178280
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178280
    reference: chr 19
allele count: 6
allele frequency: 1.008505059333714e-4
allele num: 59494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1953+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*484+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2117C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1953+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2454+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1306+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2424+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.626+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1292+10G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2424+10G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-47178300-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178300
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178300
    reference: chr 19
allele count: 3
allele frequency: 3.955487579768999e-5
allele num: 75844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1943C>A
  hgvsp: ENSP00000469106.1:p.Pro648His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2414C>A
  hgvsp: ENSP00000393978.1:p.Pro805His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1282C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*474C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.616C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2414C>A
  hgvsp: ENSP00000291281.3:p.Pro805His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1943C>A
  hgvsp: ENSP00000472744.1:p.Pro648His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2097G>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2444C>A
  hgvsp: ENSP00000470804.1:p.Pro815His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1296C>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23758
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro805His
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

19-47178330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178330
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178330
    reference: chr 19
allele count: 2
allele frequency: 2.230101915657545e-5
allele num: 89682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1266G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.586G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2414G>A
  hgvsp: ENSP00000470804.1:p.Arg805His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1913G>A
  hgvsp: ENSP00000472744.1:p.Arg638His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1913G>A
  hgvsp: ENSP00000469106.1:p.Arg638His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*444G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2384G>A
  hgvsp: ENSP00000291281.3:p.Arg795His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2384G>A
  hgvsp: ENSP00000393978.1:p.Arg795His
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1252G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2067C>T
  variant of: http://identifiers.org/hgnc/44120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28297
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg795His
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-47178338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178338
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178338
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 91256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*436G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1905G>A
  hgvsp: ENSP00000469106.1:p.Met635Ile
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.578G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1244G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1258G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2376G>A
  hgvsp: ENSP00000393978.1:p.Met792Ile
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2376G>A
  hgvsp: ENSP00000291281.3:p.Met792Ile
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1905G>A
  hgvsp: ENSP00000472744.1:p.Met635Ile
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2406G>A
  hgvsp: ENSP00000470804.1:p.Met802Ile
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2059C>T
  variant of: http://identifiers.org/hgnc/44120
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16691
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met792Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-47178352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178352
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178352
    reference: chr 19
allele count: 23
allele frequency: 2.591315712386489e-4
allele num: 88758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2045G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1891C>T
  hgvsp: ENST00000601806.1:c.1891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2392C>T
  hgvsp: ENST00000595515.1:c.2392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.564C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2362C>T
  hgvsp: ENST00000433867.1:c.2362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1230C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*422C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2362C>T
  hgvsp: ENST00000291281.4:c.2362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1244C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1891C>T
  hgvsp: ENST00000600194.1:c.1891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24445
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu788Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-47178353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178353
    reference: chr 19
allele count: 1
allele frequency: 1.126633618747183e-5
allele num: 88760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2391G>A
  hgvsp: ENST00000595515.1:c.2391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.563G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2044C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1890G>A
  hgvsp: ENST00000601806.1:c.1890G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2361G>A
  hgvsp: ENST00000291281.4:c.2361G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1229G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1243G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2361G>A
  hgvsp: ENST00000433867.1:c.2361G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1890G>A
  hgvsp: ENST00000600194.1:c.1890G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*421G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu787Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

19-47178360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178360
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178360
    reference: chr 19
allele count: 1
allele frequency: 1.149240352127244e-5
allele num: 87014
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2354A>G
  hgvsp: ENSP00000393978.1:p.Asn785Ser
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1222A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1236A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2037T>C
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2384A>G
  hgvsp: ENSP00000470804.1:p.Asn795Ser
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1883A>G
  hgvsp: ENSP00000472744.1:p.Asn628Ser
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*414A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1883A>G
  hgvsp: ENSP00000469106.1:p.Asn628Ser
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.556A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2354A>G
  hgvsp: ENSP00000291281.3:p.Asn785Ser
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn785Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

19-47178360-TTGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178360
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178357
    reference: chr 19
allele count: 1
allele frequency: 1.149240352127244e-5
allele num: 87014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2381_2383delTCA
  hgvsp: ENSP00000470804.1:p.Ile794del
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.553_555delTCA
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*411_*413delTCA
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2351_2353delTCA
  hgvsp: ENSP00000291281.3:p.Ile784del
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2351_2353delTCA
  hgvsp: ENSP00000393978.1:p.Ile784del
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1880_1882delTCA
  hgvsp: ENSP00000469106.1:p.Ile627del
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1219_1221delTCA
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2033_189-2031delTGA
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1233_1235delTCA
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1880_1882delTCA
  hgvsp: ENSP00000472744.1:p.Ile627del
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27432
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile784del
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: TTGA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-47178383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178383
    reference: chr 19
allele count: 1
allele frequency: 1.289923120582013e-5
allele num: 77524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2014G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-8C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-8C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2339-8C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-47178386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178386
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 76180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2011A>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-11T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-11T>C
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19839
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-47178388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178388
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178388
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 74922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2009G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-13C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-13C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19977
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

19-47178390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178390
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178390
    reference: chr 19
allele count: 2
allele frequency: 2.71370420624152e-5
allele num: 73700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-2007G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-15C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-15C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17439
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/19-47178405-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178405
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178405
    reference: chr 19
allele count: 2
allele frequency: 3.174804749507905e-5
allele num: 62996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1992C>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-30G>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-30G>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17942
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6283
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

19-47178406-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178406
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178406
    reference: chr 19
allele count: 1
allele frequency: 1.599692858971077e-5
allele num: 62512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-31A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1991T>C
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-31A>G
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17728
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6097
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

19-47178412-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178412
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178412
    reference: chr 19
allele count: 1
allele frequency: 1.740219963803425e-5
allele num: 57464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1985T>C
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-37A>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-37A>G
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15712
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

19-47178417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178417
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178417
    reference: chr 19
allele count: 1
allele frequency: 1.846244738202496e-5
allele num: 54164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1980G>A
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-42C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-42C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24150
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4619
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-47178418-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178418
    reference: chr 19
allele count: 1
allele frequency: 1.863585538576221e-5
allele num: 53660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1979G>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-43C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-43C>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-47178421-ACTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178421
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178418
    reference: chr 19
allele count: 1
allele frequency: 1.980433318810155e-5
allele num: 50494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-49_1221-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-49_1868-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1968_189-1966delTCC
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-49_1207-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-49_2339-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-49_1868-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-49_2369-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-49_541-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-49_*399-47delGAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-49_2339-47delGAG
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10368
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: ACTC
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-47178425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178425
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178425
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 49022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1972C>G
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-50G>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-50G>C
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25999
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-47178427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47178427
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47178427
    reference: chr 19
allele count: 1
allele frequency: 2.081598667776853e-5
allele num: 48040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1868-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1868-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000245598
  ensembl transcript: ENST00000525008
  gene symbol: DACT3-AS1
  hgvsc: ENST00000525008.1:n.189-1970C>T
  variant of: http://identifiers.org/hgnc/44120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1221-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*399-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2339-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1207-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.541-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2369-52G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2339-52G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25921
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-47181575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181575
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181575
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 32372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+78G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+78G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+78G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+78G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+78G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+48G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+78G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+78G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27959
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9406
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

19-47181577-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181577
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181575
    reference: chr 19
allele count: 1
allele frequency: 3.063350079647102e-5
allele num: 32644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+44_2368+45delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+74_540+75delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+74_1867+75delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+74_*398+75delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+74_2338+75delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+74_1867+75delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+74_1206+75delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+44_1220+45delAG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+74_2338+75delAG
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28040
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4872
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: CCT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-47181583-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181583
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181583
    reference: chr 19
allele count: 2
allele frequency: 5.956635692161067e-5
allele num: 33576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+70T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+40T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+40T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+70T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+70T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+70T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+70T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+70T>C
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+70T>C
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11577
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28982
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10604
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4885
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22105
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-47181590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181590
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181590
    reference: chr 19
allele count: 3
allele frequency: 8.485602760649431e-5
allele num: 35354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+33G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+63G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+63G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+63G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+63G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+33G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+63G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+63G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+63G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11567
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-47181591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181591
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181591
    reference: chr 19
allele count: 43
allele frequency: 1.191531811128353e-3
allele num: 36088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+62C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+62C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+62C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+32C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+32C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+62C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+62C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+62C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+62C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31152
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 8782
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

19-47181604-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181604
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181605
    reference: chr 19
allele count: 3
allele frequency: 6.599788806758183e-5
allele num: 45456
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+48dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+18dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+48dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+48dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+18dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+48dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+48dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+48dupG
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+48dupG
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31903
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

19-47181611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181611
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181611
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 56374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+12G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+42G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+42G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+42G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+42G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+42G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+42G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+12G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+42G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28734
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15571
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

19-47181621-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181621
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181621
    reference: chr 19
allele count: 2
allele frequency: 2.717243628063692e-5
allele num: 73604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2368+2T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+32T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+32T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+32T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1220+2T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+32T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+32T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+32T>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+32T>A
  variant of: http://identifiers.org/hgnc/17293
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
hgvs: n.1220+2T>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

19-47181625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181625
    reference: chr 19
allele count: 2
allele frequency: 2.422187235073271e-5
allele num: 82570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+28C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+28C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1218C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+28C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+28C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2366C>T
  hgvsp: ENSP00000470804.1:p.Ala789Val
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+28C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+28C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+28C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala789Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

19-47181625-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181625
    reference: chr 19
allele count: 1
allele frequency: 1.211093617536636e-5
allele num: 82570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+28C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1218C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+28C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+28C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+28C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+28C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2366C>G
  hgvsp: ENSP00000470804.1:p.Ala789Gly
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+28C>G
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+28C>G
  variant of: http://identifiers.org/hgnc/17293
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala789Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-47181631-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181631
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181631
    reference: chr 19
allele count: 1
allele frequency: 1.055475808494469e-5
allele num: 94744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+22C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+22C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+22C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+22C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+22C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2360C>A
  hgvsp: ENSP00000470804.1:p.Pro787Gln
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+22C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1212C>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+22C>A
  variant of: http://identifiers.org/hgnc/17293
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro787Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

19-47181637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181637
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181637
    reference: chr 19
allele count: 1
allele frequency: 9.829362270975859e-6
allele num: 101736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+16C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+16C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+16C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+16C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+16C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+16C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1206C>T
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2354C>T
  hgvsp: ENSP00000470804.1:p.Pro785Leu
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+16C>T
  variant of: http://identifiers.org/hgnc/17293
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro785Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

19-47181639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47181639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47181639
    reference: chr 19
allele count: 2
allele frequency: 1.934310805060157e-5
allele num: 103396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472913
  ensembl transcript: ENST00000597390
  gene symbol: PRKD2
  hgvsc: ENST00000597390.1:c.*398+14G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000291281
  ensembl transcript: ENST00000291281
  gene symbol: PRKD2
  hgvsc: ENST00000291281.4:c.2338+14G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000469106
  ensembl transcript: ENST00000601806
  gene symbol: PRKD2
  hgvsc: ENST00000601806.1:c.1867+14G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000393978
  ensembl transcript: ENST00000433867
  gene symbol: PRKD2
  hgvsc: ENST00000433867.1:c.2338+14G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000597589
  gene symbol: PRKD2
  hgvsc: ENST00000597589.1:n.1206+14G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000599019
  gene symbol: PRKD2
  hgvsc: ENST00000599019.1:n.1204G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000470804
  ensembl transcript: ENST00000595515
  gene symbol: PRKD2
  hgvsc: ENST00000595515.1:c.2352G>A
  hgvsp: ENST00000595515.1:c.2352G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl transcript: ENST00000602155
  gene symbol: PRKD2
  hgvsc: ENST00000602155.1:n.540+14G>A
  variant of: http://identifiers.org/hgnc/17293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105287
  ensembl protein: ENSP00000472744
  ensembl transcript: ENST00000600194
  gene symbol: PRKD2
  hgvsc: ENST00000600194.1:c.1867+14G>A
  variant of: http://identifiers.org/hgnc/17293
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro784Pro
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.939111886755866e-4
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.79e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.546511e6

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.126e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.324e0

QD
type: SiteQuality
SIO_000300: 9.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.351000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -7.042e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

DP
type: SiteQuality
SIO_000300: 1.548377e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

GenotypeQuality
all individuals: 8507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.859e0

QD
type: SiteQuality
SIO_000300: 1.527e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.549458e6

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 2.0177e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8524
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.51426507764536e-5
allele num: 66456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.171e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 1.343e0

QD
type: SiteQuality
SIO_000300: 9.93e0

DP
type: SiteQuality
SIO_000300: 1.550495e6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 66

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 278

GenotypeQuality
all individuals: 1254
bin: 8.25e1
variant carriers: 1254

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 23

GenotypeQuality
all individuals: 830
bin: 8.75e1
variant carriers: 830

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 711
bin: 6.75e1
variant carriers: 711

GenotypeQuality
all individuals: 524
bin: 6.25e1
variant carriers: 524

GenotypeQuality
all individuals: 440
bin: 7.25e1
variant carriers: 440

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 235

GenotypeQuality
all individuals: 1627
bin: 9.25e1
variant carriers: 1627

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 37

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 220

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 73

GenotypeQuality
all individuals: 1022
bin: 7.75e1
variant carriers: 1022

GenotypeQuality
all individuals: 53248
bin: 9.75e1
variant carriers: 53248

Latino
type: Population
allele count: 11570
allele frequency: 1.0e0
allele num: 11570
num of homozygotes: 5785

South Asian
type: Population
allele count: 16508
allele frequency: 1.0e0
allele num: 16508
num of homozygotes: 8254

European (Finnish)
type: Population
allele count: 6604
allele frequency: 1.0e0
allele num: 6604
num of homozygotes: 3302

East Asian
type: Population
allele count: 8638
allele frequency: 1.0e0
allele num: 8638
num of homozygotes: 4319

African
type: Population
allele count: 10383
allele frequency: 9.993262752646775e-1
allele num: 10390
num of homozygotes: 5188

Other
type: Population
allele count: 908
allele frequency: 1.0e0
allele num: 908
num of homozygotes: 454

European (Non-Finnish)
type: Population
allele count: 66604
allele frequency: 9.993698046394383e-1
allele num: 66646
num of homozygotes: 33281

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 3.364e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.304541e6

GenotypeQuality
all individuals: 927
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.075030750307503e-4
allele num: 6504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

FS
type: SiteQuality
SIO_000300: 2.885e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.132e0

QD
type: SiteQuality
SIO_000300: 1.139e1

DP
type: SiteQuality
SIO_000300: 1.689128e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

GenotypeQuality
all individuals: 43398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 9.75e1
variant carriers: 80

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 81
allele frequency: 7.82608695652174e-3
allele num: 10350
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.6886e6

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
all individuals: 905
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.016e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.714e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.685687e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.217e0

DP
type: SiteQuality
SIO_000300: 1.685112e6

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

ClippingRankSum
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SIO_000300: -3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 2.312e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008785654110001e-5
allele num: 66472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

FS
type: SiteQuality
SIO_000300: 2.312e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.217e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.685112e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1759
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GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013409673045051e-5
allele num: 66370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

DP
type: SiteQuality
SIO_000300: 1.67633e6

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 7.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

FS
type: SiteQuality
SIO_000300: 8.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.677e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 876
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variant carriers: 1

GenotypeQuality
all individuals: 759
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 1.675927e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.871e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.0e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.66917e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.971e0

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

FS
type: SiteQuality
SIO_000300: 1.0178e1

QD
type: SiteQuality
SIO_000300: 1.748e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.564945226917058e-4
allele num: 6390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.948e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.205e0

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.655312e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 226
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.063474218346449e-4
allele num: 65822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.64097e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

BaseQRankSum
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SIO_000300: -2.099e0

QD
type: SiteQuality
SIO_000300: 1.075e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.045159718627242e-5
allele num: 65678
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

BaseQRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.631996e6

FS
type: SiteQuality
SIO_000300: 1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.473e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528023959415684e-5
allele num: 65444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.617764e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.909479686386316e-5
allele num: 11224
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64798
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.642e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.544e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

DP
type: SiteQuality
SIO_000300: 1.582988e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.033057851239669e-4
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.532408e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.578947368421052e-5
allele num: 15200
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.777822963264199e-5
allele num: 14754
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62274
num of homozygotes: 0

Latino
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

South Asian
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allele frequency: 2.23463687150838e-3
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Other
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Latino
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
type: SiteQuality
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.45475705557172e-4
allele num: 13748
num of homozygotes: 0

Latino
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African
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.118755118755119e-5
allele num: 58608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.246706e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

FS
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.706251706251706e-5
allele num: 58608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ClippingRankSum
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SIO_000300: -3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.246706e6

QD
type: SiteQuality
SIO_000300: 1.315e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

FS
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 13580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.032631144155308e-4
allele num: 9684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -2.327e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
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SIO_000300: 1.214137e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.355e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.735026719411479e-5
allele num: 57636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 1.188466e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.16e0

QD
type: SiteQuality
SIO_000300: 1.155e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.518796992481203e-5
allele num: 13300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.701e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.155e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

DP
type: SiteQuality
SIO_000300: 1.148475e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.622323166774821e-4
allele num: 12328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 9.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.405942450089043e-4
allele num: 42676
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41524
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.500600240096038e-4
allele num: 6664
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: 7.66e-1

BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.15e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.156190876602901e-3
allele num: 9514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.5814e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.05e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.141e0

DP
type: SiteQuality
SIO_000300: 7.54138e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.117298327334321e-4
allele num: 9446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.95116e5

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 3.164556962025317e-4
allele num: 3160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.586e0

QD
type: SiteQuality
SIO_000300: 3.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

DP
type: SiteQuality
SIO_000300: 7.25649e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.000800320128051e-4
allele num: 4998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.34784e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

QD
type: SiteQuality
SIO_000300: 3.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.956e0

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 28003
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 503
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.393199323689649e-5
allele num: 10646
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.062473438164046e-3
allele num: 4706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

DP
type: SiteQuality
SIO_000300: 8.91714e5

QD
type: SiteQuality
SIO_000300: 1.073e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.255420274757471e-5
allele num: 30718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.06015e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 1.302168109902988e-4
allele num: 30718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.737091425864519e-4
allele num: 4222
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10768
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

QD
type: SiteQuality
SIO_000300: 1.365e1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 7.529742482807088e-5
allele num: 39842
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 3.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.729169887154119e-5
allele num: 12938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089951513124895e-5
allele num: 47848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 2.247e0

VQSLOD
type: SiteQuality
SIO_000300: -2.092e-1

DP
type: SiteQuality
SIO_000300: 1.19173e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

QD
type: SiteQuality
SIO_000300: 1.762e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4056
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.48e-1

DP
type: SiteQuality
SIO_000300: 1.202643e6

MQRankSum
type: SiteQuality
SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 2.808e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.203e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.5e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

East Asian
type: Population
allele count: 23
allele frequency: 3.045550847457627e-3
allele num: 7552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.475e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

QD
type: SiteQuality
SIO_000300: 1.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 1.126e0

DP
type: SiteQuality
SIO_000300: 1.162688e6

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
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variant carriers: 0

GenotypeQuality
all individuals: 19412
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.195314367678699e-4
allele num: 8366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 2.481e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 8.141e0

VQSLOD
type: SiteQuality
SIO_000300: -2.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.163218e6

GenotypeQuality
all individuals: 1487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 21214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.851758793969849e-5
allele num: 12736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.133836e6

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 1.202e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
all individuals: 21214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.155172413793103e-5
allele num: 46400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.202e0

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.535626535626536e-4
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41008
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3214
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.376e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.82144e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.763e1

MQRankSum
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SIO_000300: -6.35e-1

FS
type: SiteQuality
SIO_000300: 1.473e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12040
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.655e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.54745e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 6.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
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SIO_000300: 3.6e-2

FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

BaseQRankSum
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SIO_000300: -1.286e0

DP
type: SiteQuality
SIO_000300: 9.34953e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

QD
type: SiteQuality
SIO_000300: 1.134e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38868
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.857142857142857e-4
allele num: 7000
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11836
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -8.6e-3

MQ
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SIO_000300: 6.0e1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32724
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.005615724027276e-4
allele num: 4986
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.596933886937081e-4
allele num: 6262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

QD
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SIO_000300: 1.246e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 7.7e-1

BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
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SIO_000300: 7.94935e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.084515731030228e-5
allele num: 32420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.89214e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 2.048e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

MQ
type: SiteQuality
SIO_000300: 5.47e1

VQSLOD
type: SiteQuality
SIO_000300: -1.9e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.385469564628614e-5
allele num: 29538
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -1.185e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

QD
type: SiteQuality
SIO_000300: 1.841e1

DP
type: SiteQuality
SIO_000300: 7.51434e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.604642779900512e-5
allele num: 27742
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.77999288002848e-4
allele num: 5618
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27456
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 390
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African
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.891959212267455e-5
allele num: 25694
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DP
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
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SIO_000300: -6.183999999999999e-1

MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.14224e5

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.909854851031322e-4
allele num: 5236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1426e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 7.15315e5

QD
type: SiteQuality
SIO_000300: 1.378e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.078e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.022e1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 4.7397e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.64334085778781e-5
allele num: 17720
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 6.083e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 2.236e1

DP
type: SiteQuality
SIO_000300: 4.78575e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.813e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 4.970178926441351e-4
allele num: 2012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.302761855132882e-4
allele num: 7676
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.00821e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

QD
type: SiteQuality
SIO_000300: 9.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2904
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Latino
type: Population
allele count: 3
allele frequency: 1.346499102333932e-3
allele num: 2228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19160
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.32e-2

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.988e0

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
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SIO_000300: -1.668e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.532958610117527e-4
allele num: 19570
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 1.3271400132714e-2
allele num: 3014
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.419999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.607e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.206854936036688e-4
allele num: 24858
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

DP
type: SiteQuality
SIO_000300: 6.71632e5

VQSLOD
type: SiteQuality
SIO_000300: -4.04e-1

FS
type: SiteQuality
SIO_000300: 5.253e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3354
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GenotypeQuality
all individuals: 197
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
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DP
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SIO_000300: 7.70886e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
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SIO_000300: 8.93e-1

InbreedingCoeff
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SIO_000300: -1.02e-2

ReadPosRankSum
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SIO_000300: 7.15e-1

FS
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QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12026
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.868786211597449e-5
allele num: 41078
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 9.30532e5

ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.8e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 7334
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East Asian
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Other
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European (Non-Finnish)
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allele num: 46274
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ReadPosRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.018261e6

BaseQRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46274
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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Other
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Latino
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
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DP
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SIO_000300: 1.018261e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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VQSLOD
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InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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MQRankSum
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FS
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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