18-8253247-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253247
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253247
    reference: chr 18
allele count: 5
allele frequency: 8.505715841045183e-5
allele num: 58784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2550C>T
  hgvsp: ENST00000332175.8:c.2550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1911C>T
  hgvsp: ENST00000444013.1:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2589C>T
  hgvsp: ENST00000580170.1:c.2589C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2364C>T
  hgvsp: ENST00000400053.4:c.2364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5330C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5073C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.69C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2592C>T
  hgvsp: ENST00000400060.4:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser863Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

18-8253248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253248
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253248
    reference: chr 18
allele count: 1
allele frequency: 1.647935137272997e-5
allele num: 60682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2590G>A
  hgvsp: ENSP00000463325.1:p.Asp864Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2551G>A
  hgvsp: ENSP00000331418.8:p.Asp851Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1912G>A
  hgvsp: ENSP00000387608.1:p.Asp638Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5074G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.70G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2593G>A
  hgvsp: ENSP00000382933.4:p.Asp865Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2365G>A
  hgvsp: ENSP00000382927.4:p.Asp789Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5331G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18037
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp864Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

18-8253257-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253257
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253257
    reference: chr 18
allele count: 1
allele frequency: 1.468256298819522e-5
allele num: 68108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1921A>G
  hgvsp: ENSP00000387608.1:p.Ser641Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5083A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2374A>G
  hgvsp: ENSP00000382927.4:p.Ser792Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2602A>G
  hgvsp: ENSP00000382933.4:p.Ser868Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.79A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2560A>G
  hgvsp: ENSP00000331418.8:p.Ser854Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2599A>G
  hgvsp: ENSP00000463325.1:p.Ser867Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5340A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser867Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

18-8253263-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253263
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253263
    reference: chr 18
allele count: 1
allele frequency: 1.384811388688861e-5
allele num: 72212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5089G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5346G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.85G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2608G>C
  hgvsp: ENSP00000382933.4:p.Val870Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1927G>C
  hgvsp: ENSP00000387608.1:p.Val643Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2566G>C
  hgvsp: ENSP00000331418.8:p.Val856Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2605G>C
  hgvsp: ENSP00000463325.1:p.Val869Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2380G>C
  hgvsp: ENSP00000382927.4:p.Val794Leu
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val869Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

18-8253270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253270
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253270
    reference: chr 18
allele count: 1
allele frequency: 1.304563362642523e-5
allele num: 76654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5353C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2612C>T
  hgvsp: ENSP00000463325.1:p.Ser871Phe
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.92C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2573C>T
  hgvsp: ENSP00000331418.8:p.Ser858Phe
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1934C>T
  hgvsp: ENSP00000387608.1:p.Ser645Phe
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5096C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2615C>T
  hgvsp: ENSP00000382933.4:p.Ser872Phe
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2387C>T
  hgvsp: ENSP00000382927.4:p.Ser796Phe
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser871Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

18-8253271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253271
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253271
    reference: chr 18
allele count: 1
allele frequency: 1.292524040947162e-5
allele num: 77368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.93C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2616C>T
  hgvsp: ENST00000400060.4:c.2616C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1935C>T
  hgvsp: ENST00000444013.1:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5097C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2613C>T
  hgvsp: ENST00000580170.1:c.2613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2574C>T
  hgvsp: ENST00000332175.8:c.2574C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2388C>T
  hgvsp: ENST00000400053.4:c.2388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5354C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23091
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22279
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser871Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/18-8253273-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253273
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253273
    reference: chr 18
allele count: 9
allele frequency: 1.1443684357755e-4
allele num: 78646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2618A>C
  hgvsp: ENSP00000382933.4:p.His873Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5099A>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2390A>C
  hgvsp: ENSP00000382927.4:p.His797Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1937A>C
  hgvsp: ENSP00000387608.1:p.His646Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.95A>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2615A>C
  hgvsp: ENSP00000463325.1:p.His872Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2576A>C
  hgvsp: ENSP00000331418.8:p.His859Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5356A>C
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23122
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20477
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His872Pro
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

18-8253274-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253274
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253274
    reference: chr 18
allele count: 1
allele frequency: 1.266175390615108e-5
allele num: 78978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5100T>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2391T>C
  hgvsp: ENST00000400053.4:c.2391T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2577T>C
  hgvsp: ENST00000332175.8:c.2577T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1938T>C
  hgvsp: ENST00000444013.1:c.1938T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2616T>C
  hgvsp: ENST00000580170.1:c.2616T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2619T>C
  hgvsp: ENST00000400060.4:c.2619T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.96T>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5357T>C
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His872His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

18-8253276-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253276
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253276
    reference: chr 18
allele count: 16
allele frequency: 2.01151592869176e-4
allele num: 79542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.98C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2579C>G
  hgvsp: ENSP00000331418.8:p.Thr860Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1940C>G
  hgvsp: ENSP00000387608.1:p.Thr647Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5102C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2621C>G
  hgvsp: ENSP00000382933.4:p.Thr874Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5359C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2618C>G
  hgvsp: ENSP00000463325.1:p.Thr873Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2393C>G
  hgvsp: ENSP00000382927.4:p.Thr798Ser
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22824
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19916
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21369
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Thr873Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

18-8253287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253287
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253287
    reference: chr 18
allele count: 2
allele frequency: 2.415692337423906e-5
allele num: 82792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2404C>T
  hgvsp: ENSP00000382927.4:p.Arg802Ter
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.109C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2629C>T
  hgvsp: ENSP00000463325.1:p.Arg877Ter
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1951C>T
  hgvsp: ENSP00000387608.1:p.Arg651Ter
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2632C>T
  hgvsp: ENSP00000382933.4:p.Arg878Ter
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5370C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2590C>T
  hgvsp: ENSP00000331418.8:p.Arg864Ter
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5113C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22679
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg877Ter
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

18-8253288-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253288
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253288
    reference: chr 18
allele count: 4
allele frequency: 4.734624307561195e-5
allele num: 84484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.110G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2591G>A
  hgvsp: ENSP00000331418.8:p.Arg864Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5114G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2630G>A
  hgvsp: ENSP00000463325.1:p.Arg877Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2633G>A
  hgvsp: ENSP00000382933.4:p.Arg878Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2405G>A
  hgvsp: ENSP00000382927.4:p.Arg802Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1952G>A
  hgvsp: ENSP00000387608.1:p.Arg651Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5371G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg877Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

18-8253292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253292
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253292
    reference: chr 18
allele count: 2
allele frequency: 2.330622043023283e-5
allele num: 85814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1956G>A
  hgvsp: ENST00000444013.1:c.1956G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5375G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5118G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2637G>A
  hgvsp: ENST00000400060.4:c.2637G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.114G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2634G>A
  hgvsp: ENST00000580170.1:c.2634G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2409G>A
  hgvsp: ENST00000400053.4:c.2409G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2595G>A
  hgvsp: ENST00000332175.8:c.2595G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23710
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu878Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/18-8253293-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253293
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253293
    reference: chr 18
allele count: 1
allele frequency: 1.161413207590997e-5
allele num: 86102
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2635C>A
  hgvsp: ENSP00000463325.1:p.Pro879Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2596C>A
  hgvsp: ENSP00000331418.8:p.Pro866Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.115C>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5119C>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1957C>A
  hgvsp: ENSP00000387608.1:p.Pro653Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2638C>A
  hgvsp: ENSP00000382933.4:p.Pro880Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5376C>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2410C>A
  hgvsp: ENSP00000382927.4:p.Pro804Thr
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro879Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

18-8253294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253294
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253294
    reference: chr 18
allele count: 8
allele frequency: 9.228497600590623e-5
allele num: 86688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2411C>T
  hgvsp: ENSP00000382927.4:p.Pro804Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2597C>T
  hgvsp: ENSP00000331418.8:p.Pro866Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1958C>T
  hgvsp: ENSP00000387608.1:p.Pro653Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5377C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2639C>T
  hgvsp: ENSP00000382933.4:p.Pro880Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.116C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2636C>T
  hgvsp: ENSP00000463325.1:p.Pro879Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5120C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23913
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro879Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

18-8253295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253295
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253295
    reference: chr 18
allele count: 5
allele frequency: 5.726065048098946e-5
allele num: 87320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2640G>A
  hgvsp: ENST00000400060.4:c.2640G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2412G>A
  hgvsp: ENST00000400053.4:c.2412G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2637G>A
  hgvsp: ENST00000580170.1:c.2637G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.117G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1959G>A
  hgvsp: ENST00000444013.1:c.1959G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2598G>A
  hgvsp: ENST00000332175.8:c.2598G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5378G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5121G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24174
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro879Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

18-8253296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253296
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253296
    reference: chr 18
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5379G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2599G>A
  hgvsp: ENSP00000331418.8:p.Ala867Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1960G>A
  hgvsp: ENSP00000387608.1:p.Ala654Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2638G>A
  hgvsp: ENSP00000463325.1:p.Ala880Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.118G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2641G>A
  hgvsp: ENSP00000382933.4:p.Ala881Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2413G>A
  hgvsp: ENSP00000382927.4:p.Ala805Thr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5122G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala880Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

18-8253298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253298
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253298
    reference: chr 18
allele count: 4
allele frequency: 4.505722267279445e-5
allele num: 88776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1962C>T
  hgvsp: ENST00000444013.1:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2640C>T
  hgvsp: ENST00000580170.1:c.2640C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.120C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5124C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2601C>T
  hgvsp: ENST00000332175.8:c.2601C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2415C>T
  hgvsp: ENST00000400053.4:c.2415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5381C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2643C>T
  hgvsp: ENST00000400060.4:c.2643C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24595
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17587
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala880Ala
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

18-8253299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253299
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253299
    reference: chr 18
allele count: 7
allele frequency: 7.812674390053349e-5
allele num: 89598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1963G>A
  hgvsp: ENSP00000387608.1:p.Asp655Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2602G>A
  hgvsp: ENSP00000331418.8:p.Asp868Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.121G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2641G>A
  hgvsp: ENSP00000463325.1:p.Asp881Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2644G>A
  hgvsp: ENSP00000382933.4:p.Asp882Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5125G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5382G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2416G>A
  hgvsp: ENSP00000382927.4:p.Asp806Asn
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25038
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp881Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

18-8253301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253301
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253301
    reference: chr 18
allele count: 5
allele frequency: 5.510127614555553e-5
allele num: 90742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2646C>T
  hgvsp: ENST00000400060.4:c.2646C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2418C>T
  hgvsp: ENST00000400053.4:c.2418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1965C>T
  hgvsp: ENST00000444013.1:c.1965C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5127C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5384C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.123C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2604C>T
  hgvsp: ENST00000332175.8:c.2604C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2643C>T
  hgvsp: ENST00000580170.1:c.2643C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14683
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp881Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

18-8253302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253302
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253302
    reference: chr 18
allele count: 18
allele frequency: 1.964036312849162e-4
allele num: 91648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2647G>A
  hgvsp: ENSP00000382933.4:p.Val883Met
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1966G>A
  hgvsp: ENSP00000387608.1:p.Val656Met
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2419G>A
  hgvsp: ENSP00000382927.4:p.Val807Met
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5385G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.124G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2605G>A
  hgvsp: ENSP00000331418.8:p.Val869Met
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5128G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2644G>A
  hgvsp: ENSP00000463325.1:p.Val882Met
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26405
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val882Met
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

18-8253304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253304
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253304
    reference: chr 18
allele count: 158
allele frequency: 1.69589764506365e-3
allele num: 93166
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2646G>A
  hgvsp: ENST00000580170.1:c.2646G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.126G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2649G>A
  hgvsp: ENST00000400060.4:c.2649G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5387G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2607G>A
  hgvsp: ENST00000332175.8:c.2607G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1968G>A
  hgvsp: ENST00000444013.1:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2421G>A
  hgvsp: ENST00000400053.4:c.2421G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5130G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27482
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.75e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val882Val
num of homozygotes: 2
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

18-8253308-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253308
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253308
    reference: chr 18
allele count: 1
allele frequency: 1.047339757017176e-5
allele num: 95480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2425T>C
  hgvsp: ENSP00000382927.4:p.Tyr809His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5391T>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2611T>C
  hgvsp: ENSP00000331418.8:p.Tyr871His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1972T>C
  hgvsp: ENSP00000387608.1:p.Tyr658His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2650T>C
  hgvsp: ENSP00000463325.1:p.Tyr884His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2653T>C
  hgvsp: ENSP00000382933.4:p.Tyr885His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.130T>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5134T>C
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr884His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

18-8253314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253314
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253314
    reference: chr 18
allele count: 1
allele frequency: 1.029060673417305e-5
allele num: 97176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.136A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5140A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2656A>G
  hgvsp: ENSP00000463325.1:p.Thr886Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2659A>G
  hgvsp: ENSP00000382933.4:p.Thr887Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2617A>G
  hgvsp: ENSP00000331418.8:p.Thr873Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1978A>G
  hgvsp: ENSP00000387608.1:p.Thr660Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5397A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2431A>G
  hgvsp: ENSP00000382927.4:p.Thr811Ala
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31869
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr886Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

18-8253315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253315
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253315
    reference: chr 18
allele count: 1
allele frequency: 1.028150768028624e-5
allele num: 97262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2432C>T
  hgvsp: ENSP00000382927.4:p.Thr811Ile
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2657C>T
  hgvsp: ENSP00000463325.1:p.Thr886Ile
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1979C>T
  hgvsp: ENSP00000387608.1:p.Thr660Ile
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2618C>T
  hgvsp: ENSP00000331418.8:p.Thr873Ile
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2660C>T
  hgvsp: ENSP00000382933.4:p.Thr887Ile
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.137C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5398C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5141C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29028
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr886Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

18-8253322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253322
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253322
    reference: chr 18
allele count: 1
allele frequency: 1.013150696034528e-5
allele num: 98702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.144G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2664G>C
  hgvsp: ENSP00000463325.1:p.Gln888His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2439G>C
  hgvsp: ENSP00000382927.4:p.Gln813His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2625G>C
  hgvsp: ENSP00000331418.8:p.Gln875His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1986G>C
  hgvsp: ENSP00000387608.1:p.Gln662His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2667G>C
  hgvsp: ENSP00000382933.4:p.Gln889His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5148G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5405G>C
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29292
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln888His
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-8253331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253331
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253331
    reference: chr 18
allele count: 3
allele frequency: 2.984124457884057e-5
allele num: 100532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2634C>T
  hgvsp: ENST00000332175.8:c.2634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5157C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.1995C>T
  hgvsp: ENST00000444013.1:c.1995C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2676C>T
  hgvsp: ENST00000400060.4:c.2676C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2673C>T
  hgvsp: ENST00000580170.1:c.2673C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.153C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5414C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2448C>T
  hgvsp: ENST00000400053.4:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30255
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro891Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

18-8253336-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253336
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253336
    reference: chr 18
allele count: 3
allele frequency: 2.938986637407422e-5
allele num: 102076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.158T>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2681T>A
  hgvsp: ENSP00000382933.4:p.Ile894Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2639T>A
  hgvsp: ENSP00000331418.8:p.Ile880Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2000T>A
  hgvsp: ENSP00000387608.1:p.Ile667Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2678T>A
  hgvsp: ENSP00000463325.1:p.Ile893Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5162T>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2453T>A
  hgvsp: ENSP00000382927.4:p.Ile818Asn
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5419T>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31286
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile893Asn
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-8253337-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253337
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253337
    reference: chr 18
allele count: 4
allele frequency: 3.915503435854265e-5
allele num: 102158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2682C>A
  hgvsp: ENST00000400060.4:c.2682C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2001C>A
  hgvsp: ENST00000444013.1:c.2001C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.159C>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2640C>A
  hgvsp: ENST00000332175.8:c.2640C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2679C>A
  hgvsp: ENST00000580170.1:c.2679C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5420C>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2454C>A
  hgvsp: ENST00000400053.4:c.2454C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5163C>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31323
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile893Ile
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

18-8253338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253338
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253338
    reference: chr 18
allele count: 5
allele frequency: 4.893804443574435e-5
allele num: 102170
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2680C>T
  hgvsp: ENSP00000463325.1:p.Arg894Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2002C>T
  hgvsp: ENSP00000387608.1:p.Arg668Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.160C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2683C>T
  hgvsp: ENSP00000382933.4:p.Arg895Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2455C>T
  hgvsp: ENSP00000382927.4:p.Arg819Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2641C>T
  hgvsp: ENSP00000331418.8:p.Arg881Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5421C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5164C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31367
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg894Trp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

18-8253339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253339
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253339
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 102418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5422G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2642G>A
  hgvsp: ENSP00000331418.8:p.Arg881Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2681G>A
  hgvsp: ENSP00000463325.1:p.Arg894Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2684G>A
  hgvsp: ENSP00000382933.4:p.Arg895Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2456G>A
  hgvsp: ENSP00000382927.4:p.Arg819Gln
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.161G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5165G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2003G>A
  hgvsp: ENSP00000387608.1:p.Arg668Gln
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg894Gln
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

18-8253339-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253339
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253339
    reference: chr 18
allele count: 1
allele frequency: 9.76390868792595e-6
allele num: 102418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2684G>C
  hgvsp: ENSP00000382933.4:p.Arg895Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.161G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5165G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5422G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2642G>C
  hgvsp: ENSP00000331418.8:p.Arg881Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2456G>C
  hgvsp: ENSP00000382927.4:p.Arg819Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2681G>C
  hgvsp: ENSP00000463325.1:p.Arg894Pro
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2003G>C
  hgvsp: ENSP00000387608.1:p.Arg668Pro
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31643
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg894Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

18-8253340-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253340
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253340
    reference: chr 18
allele count: 1
allele frequency: 9.734823410303337e-6
allele num: 102724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5166G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2004G>C
  hgvsp: ENST00000444013.1:c.2004G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2643G>C
  hgvsp: ENST00000332175.8:c.2643G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2682G>C
  hgvsp: ENST00000580170.1:c.2682G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2685G>C
  hgvsp: ENST00000400060.4:c.2685G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.162G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2457G>C
  hgvsp: ENST00000400053.4:c.2457G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5423G>C
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg894Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

18-8253365-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253365
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253365
    reference: chr 18
allele count: 3
allele frequency: 2.933010050447773e-5
allele num: 102284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2482A>G
  hgvsp: ENSP00000382927.4:p.Thr828Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2710A>G
  hgvsp: ENSP00000382933.4:p.Thr904Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.187A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5191A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2029A>G
  hgvsp: ENSP00000387608.1:p.Thr677Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2668A>G
  hgvsp: ENSP00000331418.8:p.Thr890Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2707A>G
  hgvsp: ENSP00000463325.1:p.Thr903Ala
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5448A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30838
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9930
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr903Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

18-8253370-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253370
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253370
    reference: chr 18
allele count: 1
allele frequency: 9.916503044366434e-6
allele num: 100842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5453G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2487G>C
  hgvsp: ENSP00000382927.4:p.Gln829His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2673G>C
  hgvsp: ENSP00000331418.8:p.Gln891His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2034G>C
  hgvsp: ENSP00000387608.1:p.Gln678His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2715G>C
  hgvsp: ENSP00000382933.4:p.Gln905His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5196G>C
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2712G>C
  hgvsp: ENSP00000463325.1:p.Gln904His
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.192G>C
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln904His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

18-8253378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253378
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253378
    reference: chr 18
allele count: 2
allele frequency: 2.011748611893458e-5
allele num: 99416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2681G>A
  hgvsp: ENSP00000331418.8:p.Cys894Tyr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2723G>A
  hgvsp: ENSP00000382933.4:p.Cys908Tyr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.200G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2495G>A
  hgvsp: ENSP00000382927.4:p.Cys832Tyr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2720G>A
  hgvsp: ENSP00000463325.1:p.Cys907Tyr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2042G>A
  hgvsp: ENSP00000387608.1:p.Cys681Tyr
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5461G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5204G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys907Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

18-8253381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253381
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253381
    reference: chr 18
allele count: 3
allele frequency: 3.077933270406698e-5
allele num: 97468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2726C>T
  hgvsp: ENSP00000382933.4:p.Ala909Val
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2045C>T
  hgvsp: ENSP00000387608.1:p.Ala682Val
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2723C>T
  hgvsp: ENSP00000463325.1:p.Ala908Val
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2498C>T
  hgvsp: ENSP00000382927.4:p.Ala833Val
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.203C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2684C>T
  hgvsp: ENSP00000331418.8:p.Ala895Val
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5464C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5207C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27746
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala908Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

18-8253382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253382
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253382
    reference: chr 18
allele count: 11
allele frequency: 1.127418825844539e-4
allele num: 97568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5465G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2499G>A
  hgvsp: ENST00000400053.4:c.2499G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5208G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2046G>A
  hgvsp: ENST00000444013.1:c.2046G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2727G>A
  hgvsp: ENST00000400060.4:c.2727G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2724G>A
  hgvsp: ENST00000580170.1:c.2724G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2685G>A
  hgvsp: ENST00000332175.8:c.2685G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.204G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala908Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

18-8253391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253391
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253391
    reference: chr 18
allele count: 7
allele frequency: 7.346304808681233e-5
allele num: 95286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2508C>T
  hgvsp: ENST00000400053.4:c.2508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2055C>T
  hgvsp: ENST00000444013.1:c.2055C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2733C>T
  hgvsp: ENST00000580170.1:c.2733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5217C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5474C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2694C>T
  hgvsp: ENST00000332175.8:c.2694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.213C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2736C>T
  hgvsp: ENST00000400060.4:c.2736C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr911Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

18-8253392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253392
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253392
    reference: chr 18
allele count: 3
allele frequency: 3.159358018450651e-5
allele num: 94956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.214G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5218G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2695G>A
  hgvsp: ENSP00000331418.8:p.Gly899Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5475G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2734G>A
  hgvsp: ENSP00000463325.1:p.Gly912Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2737G>A
  hgvsp: ENSP00000382933.4:p.Gly913Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2056G>A
  hgvsp: ENSP00000387608.1:p.Gly686Ser
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2509G>A
  hgvsp: ENSP00000382927.4:p.Gly837Ser
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26697
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31931
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly912Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

18-8253393-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253393
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253393
    reference: chr 18
allele count: 1
allele frequency: 1.058335450004233e-5
allele num: 94488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5476G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5219G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2735G>A
  hgvsp: ENSP00000463325.1:p.Gly912Asp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2696G>A
  hgvsp: ENSP00000331418.8:p.Gly899Asp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.215G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2057G>A
  hgvsp: ENSP00000387608.1:p.Gly686Asp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2738G>A
  hgvsp: ENSP00000382933.4:p.Gly913Asp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2510G>A
  hgvsp: ENSP00000382927.4:p.Gly837Asp
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly912Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

18-8253406-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253406
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253406
    reference: chr 18
allele count: 1
allele frequency: 1.128617218184281e-5
allele num: 88604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.228A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2709A>G
  hgvsp: ENST00000332175.8:c.2709A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5232A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2523A>G
  hgvsp: ENST00000400053.4:c.2523A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2070A>G
  hgvsp: ENST00000444013.1:c.2070A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2748A>G
  hgvsp: ENST00000580170.1:c.2748A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2751A>G
  hgvsp: ENST00000400060.4:c.2751A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5489A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20907
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25293
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu916Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

18-8253409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253409
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253409
    reference: chr 18
allele count: 1
allele frequency: 1.144374256156733e-5
allele num: 87384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5492C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.231C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5235C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2073C>T
  hgvsp: ENST00000444013.1:c.2073C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2754C>T
  hgvsp: ENST00000400060.4:c.2754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2751C>T
  hgvsp: ENST00000580170.1:c.2751C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2712C>T
  hgvsp: ENST00000332175.8:c.2712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2526C>T
  hgvsp: ENST00000400053.4:c.2526C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14237
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr917Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

18-8253410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253410
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253410
    reference: chr 18
allele count: 3
allele frequency: 3.447245650725071e-5
allele num: 87026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2527G>A
  hgvsp: ENSP00000382927.4:p.Glu843Lys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2074G>A
  hgvsp: ENSP00000387608.1:p.Glu692Lys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.232G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2713G>A
  hgvsp: ENSP00000331418.8:p.Glu905Lys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2752G>A
  hgvsp: ENSP00000463325.1:p.Glu918Lys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5493G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2755G>A
  hgvsp: ENSP00000382933.4:p.Glu919Lys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5236G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19713
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu918Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

18-8253424-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253424
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253424
    reference: chr 18
allele count: 1
allele frequency: 1.249188027781942e-5
allele num: 80052
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+12C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+12C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+12C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5250C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+12C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+12C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5507C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+12C>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

18-8253435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253435
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253435
    reference: chr 18
allele count: 1
allele frequency: 1.34781788284767e-5
allele num: 74194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+23G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+23G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+23G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+23G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5518G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+23G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5261G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+23G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17291
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23274
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

18-8253443-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253443
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253443
    reference: chr 18
allele count: 1
allele frequency: 1.44225222106842e-5
allele num: 69336
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+31C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5526C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+31C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+31C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5269C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+31C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+31C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+31C>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

18-8253447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253447
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253447
    reference: chr 18
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+35C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+35C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+35C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+35C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+35C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+35C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5530C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5273C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23157
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18897
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26521
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

18-8253456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253456
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253456
    reference: chr 18
allele count: 1
allele frequency: 1.711859764448096e-5
allele num: 58416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+44A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5539A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+44A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+44A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+44A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5282A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+44A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+44A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19787
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

18-8253459-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253459
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253459
    reference: chr 18
allele count: 2
allele frequency: 3.537568982595161e-5
allele num: 56536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+47C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5285C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5542C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+47C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+47C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+47C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+47C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+47C>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19113
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5942
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19176
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

18-8253459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253459
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253459
    reference: chr 18
allele count: 32
allele frequency: 5.660110372152257e-4
allele num: 56536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5542C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5285C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+47C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+47C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+47C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+47C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+47C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+47C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23117
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19113
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19176
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 9.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 5942
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8657
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

18-8253460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253460
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253460
    reference: chr 18
allele count: 1
allele frequency: 1.799791224217991e-5
allele num: 55562
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+48C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5543C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+48C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+48C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5286C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+48C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+48C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+48C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18818
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23441
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

18-8253461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8253461
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8253461
    reference: chr 18
allele count: 3
allele frequency: 5.432617435080222e-5
allele num: 55222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000580838
  gene symbol: PTPRM
  hgvsc: ENST00000580838.1:n.234+49A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2529+49A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2715+49A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2757+49A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.825+5544A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.613+5287A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2754+49A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2076+49A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18608
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8547
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7971
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

18-8296316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296316
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296316
    reference: chr 18
allele count: 2
allele frequency: 1.661543573980228e-5
allele num: 120370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-50C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-50C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-50C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-50C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-50C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-50C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-50C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7470
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

18-8296317-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296317
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296317
    reference: chr 18
allele count: 44
allele frequency: 3.653210674017369e-4
allele num: 120442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-49C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-49C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-49C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-49C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-49C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-49C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-49C>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18238
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

18-8296326-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296326
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296326
    reference: chr 18
allele count: 13
allele frequency: 1.078229712693252e-4
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-40C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-40C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-40C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-40C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-40C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-40C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-40C>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18807
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

18-8296329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296329
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296329
    reference: chr 18
allele count: 6
allele frequency: 4.977683386152085e-5
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-37C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-37C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-37C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-37C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-37C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-37C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-37C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16928
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

18-8296330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296330
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296330
    reference: chr 18
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-36G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-36G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-36G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-36G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-36G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-36G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-36G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17040
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

18-8296333-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296333
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296333
    reference: chr 18
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-33A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-33A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-33A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-33A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-33A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-33A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-33A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17825
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32737
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

18-8296335-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296335
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296335
    reference: chr 18
allele count: 2
allele frequency: 1.655218074981379e-5
allele num: 120830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-31A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-31A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-31A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-31A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-31A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-31A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-31A>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

18-8296335-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296335
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296335
    reference: chr 18
allele count: 1
allele frequency: 8.276090374906894e-6
allele num: 120830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-31A>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-31A>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-31A>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-31A>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-31A>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-31A>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-31A>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18025
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

18-8296343-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296343
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296343
    reference: chr 18
allele count: 4
allele frequency: 3.30627696682151e-5
allele num: 120982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-23T>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-23T>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-23T>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-23T>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-23T>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-23T>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-23T>G
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9148
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

18-8296348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296348
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296348
    reference: chr 18
allele count: 195
allele frequency: 1.610665080781049e-3
allele num: 121068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-18G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-18G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-18G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-18G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-18G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-18G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-18G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20404
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 2
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

18-8296350-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296350
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296350
    reference: chr 18
allele count: 7
allele frequency: 5.780442286412657e-5
allele num: 121098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614-16C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077-16C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826-16C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530-16C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758-16C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755-16C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716-16C>T
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

18-8296366-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296366
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296366
    reference: chr 18
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2530A>G
  hgvsp: ENSP00000382927.4:p.Ser844Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.614A>G
  hgvsp: ENSP00000464128.1:p.Glu205Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2755A>G
  hgvsp: ENSP00000463325.1:p.Ser919Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2758A>G
  hgvsp: ENSP00000382933.4:p.Ser920Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.826A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2077A>G
  hgvsp: ENSP00000387608.1:p.Ser693Gly
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2716A>G
  hgvsp: ENSP00000331418.8:p.Ser906Gly
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser919Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

18-8296368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296368
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296368
    reference: chr 18
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.616C>T
  hgvsp: ENSP00000464128.1:p.Leu206Phe
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2532C>T
  hgvsp: ENST00000400053.4:c.2532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2757C>T
  hgvsp: ENST00000580170.1:c.2757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2760C>T
  hgvsp: ENST00000400060.4:c.2760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.828C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2079C>T
  hgvsp: ENST00000444013.1:c.2079C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2718C>T
  hgvsp: ENST00000332175.8:c.2718C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu206Phe
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

18-8296380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296380
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296380
    reference: chr 18
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2769G>A
  hgvsp: ENST00000580170.1:c.2769G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2091G>A
  hgvsp: ENST00000444013.1:c.2091G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2544G>A
  hgvsp: ENST00000400053.4:c.2544G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.840G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2772G>A
  hgvsp: ENST00000400060.4:c.2772G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2730G>A
  hgvsp: ENST00000332175.8:c.2730G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly923Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

18-8296392-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296392
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296392
    reference: chr 18
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2784A>G
  hgvsp: ENST00000400060.4:c.2784A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2103A>G
  hgvsp: ENST00000444013.1:c.2103A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.*16A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2781A>G
  hgvsp: ENST00000580170.1:c.2781A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.852A>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2556A>G
  hgvsp: ENST00000400053.4:c.2556A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2742A>G
  hgvsp: ENST00000332175.8:c.2742A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7653
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro927Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

18-8296395-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296395
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296395
    reference: chr 18
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.855G>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.*19G>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2106G>T
  hgvsp: ENSP00000387608.1:p.Trp702Cys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2559G>T
  hgvsp: ENSP00000382927.4:p.Trp853Cys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2787G>T
  hgvsp: ENSP00000382933.4:p.Trp929Cys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2745G>T
  hgvsp: ENSP00000331418.8:p.Trp915Cys
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2784G>T
  hgvsp: ENSP00000463325.1:p.Trp928Cys
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34942
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp928Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

18-8296400-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296400
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296400
    reference: chr 18
allele count: 53
allele frequency: 4.366956149168631e-4
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2750C>G
  hgvsp: ENSP00000331418.8:p.Ser917Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2789C>G
  hgvsp: ENSP00000463325.1:p.Ser930Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2111C>G
  hgvsp: ENSP00000387608.1:p.Ser704Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.860C>G
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2564C>G
  hgvsp: ENSP00000382927.4:p.Ser855Trp
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2792C>G
  hgvsp: ENSP00000382933.4:p.Ser931Trp
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser930Trp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

18-8296400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296400
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296400
    reference: chr 18
allele count: 5
allele frequency: 4.119769952045878e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2750C>T
  hgvsp: ENSP00000331418.8:p.Ser917Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2564C>T
  hgvsp: ENSP00000382927.4:p.Ser855Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.860C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2792C>T
  hgvsp: ENSP00000382933.4:p.Ser931Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.*24C>T
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2789C>T
  hgvsp: ENSP00000463325.1:p.Ser930Leu
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2111C>T
  hgvsp: ENSP00000387608.1:p.Ser704Leu
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser930Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

18-8296401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8296401
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 8296401
    reference: chr 18
allele count: 15
allele frequency: 1.235951352954748e-4
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000331418
  ensembl transcript: ENST00000332175
  gene symbol: PTPRM
  hgvsc: ENST00000332175.8:c.2751G>A
  hgvsp: ENST00000332175.8:c.2751G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000463325
  ensembl transcript: ENST00000580170
  gene symbol: PTPRM
  hgvsc: ENST00000580170.1:c.2790G>A
  hgvsp: ENST00000580170.1:c.2790G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173482
  ensembl transcript: ENST00000577827
  gene symbol: PTPRM
  hgvsc: ENST00000577827.1:n.861G>A
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382933
  ensembl transcript: ENST00000400060
  gene symbol: PTPRM
  hgvsc: ENST00000400060.4:c.2793G>A
  hgvsp: ENST00000400060.4:c.2793G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000387608
  ensembl transcript: ENST00000444013
  gene symbol: PTPRM
  hgvsc: ENST00000444013.1:c.2112G>A
  hgvsp: ENST00000444013.1:c.2112G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000382927
  ensembl transcript: ENST00000400053
  gene symbol: PTPRM
  hgvsc: ENST00000400053.4:c.2565G>A
  hgvsp: ENST00000400053.4:c.2565G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9675
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173482
  ensembl protein: ENSP00000464128
  ensembl transcript: ENST00000577468
  gene symbol: PTPRM
  hgvsc: ENST00000577468.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/9675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser930Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.569464498713039e-4
allele num: 31858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.37258e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

FS
type: SiteQuality
SIO_000300: 2.142e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
all individuals: 18530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.533742331288344e-4
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32794
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.312e1

DP
type: SiteQuality
SIO_000300: 8.49147e5

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

GenotypeQuality
all individuals: 26195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.738675576491209e-5
allele num: 36514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.187e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.576e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 9.01033e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

QD
type: SiteQuality
SIO_000300: 3.47e0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22858
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.586920529801325e-5
allele num: 38656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.34728e5

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

QD
type: SiteQuality
SIO_000300: 1.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 23638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 6.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.768e0

DP
type: SiteQuality
SIO_000300: 9.65841e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.956e0

VQSLOD
type: SiteQuality
SIO_000300: -1.658e0

FS
type: SiteQuality
SIO_000300: 9.699999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 2330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1702
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1045
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.715e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 9.73221e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 2.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21917
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 487
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 8.627300613496933e-4
allele num: 10432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42078
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.78298e5

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.365072607729057e-5
allele num: 42282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.478e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
SIO_000300: 8.65e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.80437e5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.75e1
variant carriers: 15

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 2.53324889170361e-3
allele num: 6316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 9.85408e5

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

GenotypeQuality
all individuals: 2162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.258151928461747e-5
allele num: 44284
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.796622097114708e-5
allele num: 11368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3746
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.012019e6

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 2.584e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.591e0

QD
type: SiteQuality
SIO_000300: 2.86e0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25033
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 3.30323717242898e-4
allele num: 9082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.209749414416405e-5
allele num: 45254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.024992e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 2.714e0

MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
all individuals: 462
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 23240
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.954209748892171e-4
allele num: 6770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.032403e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 1.4043e1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.771e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 1173
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1964
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 2146
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.164033758926639e-5
allele num: 46210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.037223e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 8.02e0

VQSLOD
type: SiteQuality
SIO_000300: -1.465e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 367
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variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.718434506164884e-4
allele num: 46554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 1.041465e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 1109
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GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.130288441054919e-5
allele num: 46942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.324324324324324e-4
allele num: 9250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

DP
type: SiteQuality
SIO_000300: 1.047861e6

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 7.226e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 1.112e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 916
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GenotypeQuality
all individuals: 460
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GenotypeQuality
all individuals: 2685
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.116670900008467e-5
allele num: 47244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0757e1

QD
type: SiteQuality
SIO_000300: 1.456e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.819e-1

DP
type: SiteQuality
SIO_000300: 1.050116e6

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 1805
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 531
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GenotypeQuality
all individuals: 105
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 305
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.2625250501002e-5
allele num: 47904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.203445447087777e-5
allele num: 12190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

FS
type: SiteQuality
SIO_000300: 9.161e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.060563e6

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.144e0

QD
type: SiteQuality
SIO_000300: 1.448e1

GenotypeQuality
all individuals: 1816
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2230
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.26685404869177e-5
allele num: 48386
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.596053997923157e-4
allele num: 7704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.432664756446991e-4
allele num: 6980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 1.068167e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.398e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 2.654e0

GenotypeQuality
all individuals: 313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1906
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.120441051738762e-4
allele num: 9432
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.571355104139882e-4
allele num: 7778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.034091371384403e-5
allele num: 49162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 7.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

DP
type: SiteQuality
SIO_000300: 1.078224e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 231
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.553626149131767e-4
allele num: 7832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.261210762331839e-3
allele num: 7136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.20690348795108e-4
allele num: 49714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.003841844085161e-5
allele num: 12494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 2.459e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.202e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.088643e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

GenotypeQuality
all individuals: 2056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 1

GenotypeQuality
all individuals: 419
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variant carriers: 0

GenotypeQuality
all individuals: 887
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variant carriers: 0

GenotypeQuality
all individuals: 338
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variant carriers: 1

GenotypeQuality
all individuals: 977
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 2

GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 15753
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 1

GenotypeQuality
all individuals: 2376
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variant carriers: 1

GenotypeQuality
all individuals: 1226
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30361
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12638
num of homozygotes: 0

African
type: Population
allele count: 151
allele frequency: 1.88655672163918e-2
allele num: 8004
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.260434056761269e-4
allele num: 9584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.97597217831173e-5
allele num: 50608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.033e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 1.10579e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

GenotypeQuality
all individuals: 1005
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 464
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 32531
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GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 2213
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variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.920196628134721e-5
allele num: 52078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

QD
type: SiteQuality
SIO_000300: 1.429e1

DP
type: SiteQuality
SIO_000300: 1.127265e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
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variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 1766
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variant carriers: 0

GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 463
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 1531
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GenotypeQuality
all individuals: 823
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.316482359136387e-4
allele num: 7596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.901e0

DP
type: SiteQuality
SIO_000300: 1.138874e6

QD
type: SiteQuality
SIO_000300: 1.058e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 2.878e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.708e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13919
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2228
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variant carriers: 0

GenotypeQuality
all individuals: 312
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GenotypeQuality
all individuals: 1742
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1155
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 463
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31083
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.877722697911972e-5
allele num: 53256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12992
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 4.545e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.140759e6

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

QD
type: SiteQuality
SIO_000300: 6.16e0

GenotypeQuality
all individuals: 1936
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variant carriers: 0

GenotypeQuality
all individuals: 30777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
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GenotypeQuality
all individuals: 302
bin: 7.5e0
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GenotypeQuality
all individuals: 361
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GenotypeQuality
all individuals: 162
bin: 8.25e1
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GenotypeQuality
all individuals: 2101
bin: 5.25e1
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GenotypeQuality
all individuals: 2200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.005429318318922e-4
allele num: 9946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

FS
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.153259e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.689e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 1482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.800828381055285e-5
allele num: 55530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.367424242424242e-4
allele num: 8448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13090
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.425e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

FS
type: SiteQuality
SIO_000300: 2.577e0

DP
type: SiteQuality
SIO_000300: 1.176123e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.300540655146825e-5
allele num: 56598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 1.099e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 8.33e0

DP
type: SiteQuality
SIO_000300: 1.189794e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.064e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.84251968503937e-5
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.291005291005291e-5
allele num: 56700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.192313e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

QD
type: SiteQuality
SIO_000300: 1.207e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.813989564236356e-5
allele num: 56728
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

FS
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 1.195568e6

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.278e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 1.345e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.198987e6

QD
type: SiteQuality
SIO_000300: 1.477e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.756666549555563e-5
allele num: 56926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

FS
type: SiteQuality
SIO_000300: 1.345e0

DP
type: SiteQuality
SIO_000300: 1.198987e6

QD
type: SiteQuality
SIO_000300: 1.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.751190809750631e-5
allele num: 57104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.199759e6

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.189593135898146e-5
allele num: 57808
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.193991e6

FS
type: SiteQuality
SIO_000300: 8.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.746846941271006e-5
allele num: 57246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.122e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.93012931866435e-4
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.108e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.156126e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 1.871e1

GenotypeQuality
all individuals: 462
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.509410288582183e-4
allele num: 7970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.790253857997064e-5
allele num: 55858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

FS
type: SiteQuality
SIO_000300: 1.3843e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: -1.498e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.13901e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.391772303276728e-4
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.155123068116771e-5
allele num: 55904
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.004807692307692e-4
allele num: 9984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.029442042413012e-4
allele num: 9714
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.178e1

DP
type: SiteQuality
SIO_000300: 1.137516e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

GenotypeQuality
all individuals: 598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.645776368077582e-5
allele num: 54858
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.209482341557813e-4
allele num: 8268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.440497335701599e-4
allele num: 9008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 1.112527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 1.673e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 461
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variant carriers: 3

GenotypeQuality
all individuals: 522
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.11781801922647e-4
allele num: 8946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.658715059271184e-5
allele num: 54664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.726e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

FS
type: SiteQuality
SIO_000300: 9.554e0

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

DP
type: SiteQuality
SIO_000300: 1.10692e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 459
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.068680182043856e-4
allele num: 4834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.63e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

DP
type: SiteQuality
SIO_000300: 1.098502e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.330140994945464e-4
allele num: 7518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.007874e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 1.707e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQ
type: SiteQuality
SIO_000300: 6.049e1

QD
type: SiteQuality
SIO_000300: 1.139e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.022e0

VQSLOD
type: SiteQuality
SIO_000300: -6.585e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.362769146906514e-4
allele num: 7338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.95101e5

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50682
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.575328354365182e-4
allele num: 7766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.367240907847963e-4
allele num: 7314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.876e0

QD
type: SiteQuality
SIO_000300: 9.76e0

DP
type: SiteQuality
SIO_000300: 9.86725e5

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.221e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.879999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.126845038070526e-5
allele num: 47018
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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SIO_000300: -9.350000000000001e-1

MQ
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FS
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6778
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.284252364201197e-5
allele num: 43778
num of homozygotes: 0

FS
type: SiteQuality
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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SIO_000300: 1.13e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41060
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Latino
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allele frequency: 1.419647927314026e-4
allele num: 7044
num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
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VQSLOD
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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SIO_000300: 6.88062e5

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3366
num of homozygotes: 0

African
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allele frequency: 1.611343860779891e-4
allele num: 6206
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5718
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39572
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Other
type: Population
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allele frequency: 0.0e0
allele num: 442
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South Asian
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MQRankSum
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34794
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 2.492522432701894e-4
allele num: 4012
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5582
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.621e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele count: 1
allele frequency: 1.834862385321101e-4
allele num: 5450
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.967359050445104e-5
allele num: 33700
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 386
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
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QD
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 8.308605341246291e-4
allele num: 33700
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African
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Other
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allele frequency: 5.181347150259068e-3
allele num: 386
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
type: Population
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 6.069802731411229e-5
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African
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allele num: 5374
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DP
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.227445685528415e-4
allele num: 16294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 1.988952e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

GenotypeQuality
all individuals: 968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2706
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8519
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 2581
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 37
allele frequency: 3.576952822892498e-3
allele num: 10344
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.483713638738896e-4
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016773259321829e-5
allele num: 66296
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

FS
type: SiteQuality
SIO_000300: 1.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.692e0

DP
type: SiteQuality
SIO_000300: 1.989734e6

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8477
bin: 9.75e1
variant carriers: 13

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.958834342886418e-4
allele num: 66366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 2.012129e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8466
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 887
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.452182442373713e-4
allele num: 16312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.729e0

FS
type: SiteQuality
SIO_000300: 4.076e0

DP
type: SiteQuality
SIO_000300: 2.022174e6

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8458
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.028119e6

FS
type: SiteQuality
SIO_000300: 4.943e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.333e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.173e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 2460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8459
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.672e0

VQSLOD
type: SiteQuality
SIO_000300: -7.766e-1

FS
type: SiteQuality
SIO_000300: 4.393e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.945e0

DP
type: SiteQuality
SIO_000300: 2.035535e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

QD
type: SiteQuality
SIO_000300: 1.493e1

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8460
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009057262359703e-5
allele num: 66466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.683e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 2.038455e6

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8460
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.038455e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 1.683e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8463
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.434867299732165e-4
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

FS
type: SiteQuality
SIO_000300: 7.815e0

MQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 2.047315e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8587
bin: 9.75e1
variant carriers: 193

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 186
allele frequency: 1.790182868142445e-2
allele num: 10390
num of homozygotes: 2

Latino
type: Population
allele count: 6
allele frequency: 5.20471894517696e-4
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004175804368072e-5
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.412e0

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

DP
type: SiteQuality
SIO_000300: 2.056198e6

FS
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

QD
type: SiteQuality
SIO_000300: 1.442e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
all individuals: 3054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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allele num: 66672
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10404
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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African
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European (Finnish)
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DP
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
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East Asian
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Latino
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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FS
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66714
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African
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East Asian
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Latino
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Other
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 66714
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South Asian
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ClippingRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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Other
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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