X-39933779-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933779
    reference: chr 0
allele count: 1
allele frequency: 1.627604166666667e-5
allele num: 61440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.820C>G
  hgvsp: ENSP00000345923.4:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.820C>G
  hgvsp: ENSP00000367705.4:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.820C>G
  hgvsp: ENSP00000384485.2:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.820C>G
  hgvsp: ENSP00000367716.4:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.820C>G
  hgvsp: ENSP00000380512.3:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.860C>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21792
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro274Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-39933787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933787
    reference: chr 0
allele count: 1
allele frequency: 1.597801425238871e-5
allele num: 62586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.812C>T
  hgvsp: ENSP00000345923.4:p.Ser271Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.812C>T
  hgvsp: ENSP00000380512.3:p.Ser271Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.812C>T
  hgvsp: ENSP00000384485.2:p.Ser271Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.812C>T
  hgvsp: ENSP00000367705.4:p.Ser271Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.812C>T
  hgvsp: ENSP00000367716.4:p.Ser271Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.852C>T
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser271Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-39933795-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933795
    reference: chr 0
allele count: 1
allele frequency: 1.551470017841905e-5
allele num: 64455
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.804G>C
  hgvsp: ENST00000378455.4:c.804G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.804G>C
  hgvsp: ENST00000397354.3:c.804G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.804G>C
  hgvsp: ENST00000378444.4:c.804G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.804G>C
  hgvsp: ENST00000342274.4:c.804G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.844G>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.804G>C
  hgvsp: ENST00000406200.2:c.804G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser268Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-39933822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933822
    reference: chr 0
allele count: 4
allele frequency: 5.494731925766172e-5
allele num: 72797
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.777G>A
  hgvsp: ENST00000378444.4:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.817G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.777G>A
  hgvsp: ENST00000342274.4:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.777G>A
  hgvsp: ENST00000406200.2:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.777G>A
  hgvsp: ENST00000397354.3:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.777G>A
  hgvsp: ENST00000378455.4:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 916
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30638
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser259Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-39933839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933839
    reference: chr 0
allele count: 2
allele frequency: 2.561541023079485e-5
allele num: 78078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.760G>A
  hgvsp: ENSP00000380512.3:p.Gly254Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.760G>A
  hgvsp: ENSP00000367716.4:p.Gly254Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.760G>A
  hgvsp: ENSP00000384485.2:p.Gly254Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.800G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.760G>A
  hgvsp: ENSP00000367705.4:p.Gly254Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.760G>A
  hgvsp: ENSP00000345923.4:p.Gly254Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
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genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13155
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genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10170
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 582
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genotype quality: GenotypeQuality
  all individuals: 1222
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genotype quality: GenotypeQuality
  all individuals: 210
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly254Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-39933840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933840
    reference: chr 0
allele count: 8
allele frequency: 1.01359484080226e-4
allele num: 78927
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.759C>T
  hgvsp: ENST00000397354.3:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.759C>T
  hgvsp: ENST00000406200.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.759C>T
  hgvsp: ENST00000342274.4:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.759C>T
  hgvsp: ENST00000378444.4:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.799C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.759C>T
  hgvsp: ENST00000378455.4:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13504
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29708
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1600
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 121
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 659
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genotype quality: GenotypeQuality
  all individuals: 3697
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.25e1
  variant carriers: 2
hgvs: p.Val253Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-39933840-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933840
    reference: chr 0
allele count: 1
allele frequency: 1.266993551002825e-5
allele num: 78927
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.759C>A
  hgvsp: ENST00000378455.4:c.759C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.759C>A
  hgvsp: ENST00000397354.3:c.759C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.799C>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.759C>A
  hgvsp: ENST00000406200.2:c.759C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.759C>A
  hgvsp: ENST00000342274.4:c.759C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.759C>A
  hgvsp: ENST00000378444.4:c.759C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val253Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-39933842-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933842
    reference: chr 0
allele count: 1
allele frequency: 1.253305593502864e-5
allele num: 79789
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.757G>A
  hgvsp: ENSP00000367705.4:p.Val253Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.757G>A
  hgvsp: ENSP00000380512.3:p.Val253Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.797G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.757G>A
  hgvsp: ENSP00000345923.4:p.Val253Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.757G>A
  hgvsp: ENSP00000367716.4:p.Val253Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.757G>A
  hgvsp: ENSP00000384485.2:p.Val253Ile
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30855
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val253Ile
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

X-39933856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933856
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933856
    reference: chr 0
allele count: 1
allele frequency: 1.199400299850075e-5
allele num: 83375
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.743C>T
  hgvsp: ENSP00000380512.3:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.783C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.743C>T
  hgvsp: ENSP00000367716.4:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.743C>T
  hgvsp: ENSP00000367705.4:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.743C>T
  hgvsp: ENSP00000345923.4:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.743C>T
  hgvsp: ENSP00000384485.2:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33717
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genotype depth: GenotypeDepth
  all individuals: 16
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genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 405
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4944
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genotype quality: GenotypeQuality
  all individuals: 910
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro248Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-39933860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933860
    reference: chr 0
allele count: 20
allele frequency: 2.370454653202484e-4
allele num: 84372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.739C>T
  hgvsp: ENST00000378455.4:c.739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.779C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.739C>T
  hgvsp: ENST00000378444.4:c.739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.739C>T
  hgvsp: ENST00000397354.3:c.739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.739C>T
  hgvsp: ENST00000406200.2:c.739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.739C>T
  hgvsp: ENST00000342274.4:c.739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16337
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34616
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46692
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 268
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Leu247Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

X-39933862-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933862
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933862
    reference: chr 0
allele count: 7
allele frequency: 8.317885831075622e-5
allele num: 84156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.737A>C
  hgvsp: ENSP00000345923.4:p.Tyr246Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.737A>C
  hgvsp: ENSP00000380512.3:p.Tyr246Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.737A>C
  hgvsp: ENSP00000367716.4:p.Tyr246Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.737A>C
  hgvsp: ENSP00000384485.2:p.Tyr246Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.777A>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.737A>C
  hgvsp: ENSP00000367705.4:p.Tyr246Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16485
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45513
  bin: 6.25e1
  variant carriers: 4
hgvs: p.Tyr246Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-39933888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933888
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933888
    reference: chr 0
allele count: 9
allele frequency: 1.032287664162413e-4
allele num: 87185
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.711C>T
  hgvsp: ENST00000378444.4:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.711C>T
  hgvsp: ENST00000378455.4:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.711C>T
  hgvsp: ENST00000406200.2:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.751C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.711C>T
  hgvsp: ENST00000342274.4:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.711C>T
  hgvsp: ENST00000397354.3:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
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genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 51565
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val237Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-39933898-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933898
    reference: chr 0
allele count: 1
allele frequency: 1.14385065885798e-5
allele num: 87424
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.701A>G
  hgvsp: ENSP00000367705.4:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.701A>G
  hgvsp: ENSP00000380512.3:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.701A>G
  hgvsp: ENSP00000367716.4:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.701A>G
  hgvsp: ENSP00000345923.4:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.701A>G
  hgvsp: ENSP00000384485.2:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.741A>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 779
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  variant carriers: 0
hgvs: p.Tyr234Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-39933903-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933903
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933903
    reference: chr 0
allele count: 1
allele frequency: 1.142948578743442e-5
allele num: 87493
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.696G>A
  hgvsp: ENST00000378444.4:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.736G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.696G>A
  hgvsp: ENST00000378455.4:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.696G>A
  hgvsp: ENST00000406200.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.696G>A
  hgvsp: ENST00000397354.3:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.696G>A
  hgvsp: ENST00000342274.4:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
hgvs: p.Pro232Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-39933907-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933907
    reference: chr 0
allele count: 1
allele frequency: 1.142321883460322e-5
allele num: 87541
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.692A>G
  hgvsp: ENSP00000384485.2:p.Gln231Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.692A>G
  hgvsp: ENSP00000367705.4:p.Gln231Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.692A>G
  hgvsp: ENSP00000380512.3:p.Gln231Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.692A>G
  hgvsp: ENSP00000345923.4:p.Gln231Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.692A>G
  hgvsp: ENSP00000367716.4:p.Gln231Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.732A>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 777
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  variant carriers: 0
hgvs: p.Gln231Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

X-39933948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933948
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933948
    reference: chr 0
allele count: 4
allele frequency: 4.560223450949096e-5
allele num: 87715
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.651G>A
  hgvsp: ENSP00000380512.3:p.Met217Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.651G>A
  hgvsp: ENSP00000384485.2:p.Met217Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.651G>A
  hgvsp: ENSP00000345923.4:p.Met217Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.651G>A
  hgvsp: ENSP00000367705.4:p.Met217Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.691G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.651G>A
  hgvsp: ENSP00000367716.4:p.Met217Ile
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19704
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met217Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

X-39933973-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933973
    reference: chr 0
allele count: 42
allele frequency: 4.787033976543534e-4
allele num: 87737
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.626C>T
  hgvsp: ENSP00000367716.4:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.626C>T
  hgvsp: ENSP00000380512.3:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.666C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.626C>T
  hgvsp: ENSP00000367705.4:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.626C>T
  hgvsp: ENSP00000384485.2:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.626C>T
  hgvsp: ENSP00000345923.4:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19872
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser209Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-39933975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933975
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933975
    reference: chr 0
allele count: 1
allele frequency: 1.139744013494569e-5
allele num: 87739
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.624C>T
  hgvsp: ENST00000406200.2:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.624C>T
  hgvsp: ENST00000378444.4:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.624C>T
  hgvsp: ENST00000342274.4:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.664C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.624C>T
  hgvsp: ENST00000378455.4:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.624C>T
  hgvsp: ENST00000397354.3:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp208Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

X-39933977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933977
    reference: chr 0
allele count: 1
allele frequency: 1.139731023478459e-5
allele num: 87740
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.622G>A
  hgvsp: ENSP00000367705.4:p.Asp208Asn
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.622G>A
  hgvsp: ENSP00000384485.2:p.Asp208Asn
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.662G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.622G>A
  hgvsp: ENSP00000367716.4:p.Asp208Asn
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.622G>A
  hgvsp: ENSP00000380512.3:p.Asp208Asn
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.622G>A
  hgvsp: ENSP00000345923.4:p.Asp208Asn
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp208Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-39933992-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039933992
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039933992
    reference: chr 0
allele count: 1
allele frequency: 1.13954919433872e-5
allele num: 87754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.647A>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.607A>G
  hgvsp: ENSP00000345923.4:p.Ile203Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.607A>G
  hgvsp: ENSP00000380512.3:p.Ile203Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.607A>G
  hgvsp: ENSP00000384485.2:p.Ile203Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.607A>G
  hgvsp: ENSP00000367705.4:p.Ile203Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.607A>G
  hgvsp: ENSP00000367716.4:p.Ile203Val
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile203Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-39934000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934000
    reference: chr 0
allele count: 3
allele frequency: 3.418764458524689e-5
allele num: 87751
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.599C>T
  hgvsp: ENSP00000384485.2:p.Thr200Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.599C>T
  hgvsp: ENSP00000345923.4:p.Thr200Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.599C>T
  hgvsp: ENSP00000380512.3:p.Thr200Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.599C>T
  hgvsp: ENSP00000367705.4:p.Thr200Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.639C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.599C>T
  hgvsp: ENSP00000367716.4:p.Thr200Met
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr200Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-39934049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934049
    reference: chr 0
allele count: 1
allele frequency: 1.139497253811618e-5
allele num: 87758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.550G>A
  hgvsp: ENSP00000345923.4:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.550G>A
  hgvsp: ENSP00000380512.3:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.550G>A
  hgvsp: ENSP00000367705.4:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.550G>A
  hgvsp: ENSP00000384485.2:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.590G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.550G>A
  hgvsp: ENSP00000367716.4:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala184Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-39934052-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934052
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934052
    reference: chr 0
allele count: 1
allele frequency: 1.139497253811618e-5
allele num: 87758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.587G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.547G>A
  hgvsp: ENSP00000380512.3:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.547G>A
  hgvsp: ENSP00000345923.4:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.547G>A
  hgvsp: ENSP00000367705.4:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.547G>A
  hgvsp: ENSP00000384485.2:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.547G>A
  hgvsp: ENSP00000367716.4:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly183Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

X-39934054-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934054
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934054
    reference: chr 0
allele count: 2
allele frequency: 2.27894257064722e-5
allele num: 87760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.545A>G
  hgvsp: ENSP00000380512.3:p.Asn182Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.545A>G
  hgvsp: ENSP00000345923.4:p.Asn182Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.585A>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.545A>G
  hgvsp: ENSP00000384485.2:p.Asn182Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.545A>G
  hgvsp: ENSP00000367716.4:p.Asn182Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.545A>G
  hgvsp: ENSP00000367705.4:p.Asn182Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn182Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-39934058-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934058
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934058
    reference: chr 0
allele count: 4
allele frequency: 4.558040953997972e-5
allele num: 87757
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.541A>G
  hgvsp: ENSP00000367705.4:p.Ile181Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.541A>G
  hgvsp: ENSP00000345923.4:p.Ile181Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.541A>G
  hgvsp: ENSP00000380512.3:p.Ile181Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.541A>G
  hgvsp: ENSP00000367716.4:p.Ile181Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.541A>G
  hgvsp: ENSP00000384485.2:p.Ile181Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.581A>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20049
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ile181Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

X-39934062-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934062
    reference: chr 0
allele count: 1
allele frequency: 1.139510238499493e-5
allele num: 87757
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.537C>G
  hgvsp: ENST00000378444.4:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.537C>G
  hgvsp: ENST00000406200.2:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.537C>G
  hgvsp: ENST00000378455.4:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.537C>G
  hgvsp: ENST00000342274.4:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.537C>G
  hgvsp: ENST00000397354.3:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.577C>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1096
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu179Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-39934069-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934069
    reference: chr 0
allele count: 3
allele frequency: 3.4186086262891e-5
allele num: 87755
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.530G>T
  hgvsp: ENSP00000367716.4:p.Ser177Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.530G>T
  hgvsp: ENSP00000384485.2:p.Ser177Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.530G>T
  hgvsp: ENSP00000345923.4:p.Ser177Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.530G>T
  hgvsp: ENSP00000367705.4:p.Ser177Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.530G>T
  hgvsp: ENSP00000380512.3:p.Ser177Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.570G>T
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36203
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
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  variant carriers: 3
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser177Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-39934071-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934071
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934071
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.528G>C
  hgvsp: ENSP00000367716.4:p.Gln176His
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.528G>C
  hgvsp: ENSP00000380512.3:p.Gln176His
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.568G>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.528G>C
  hgvsp: ENSP00000367705.4:p.Gln176His
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.528G>C
  hgvsp: ENSP00000345923.4:p.Gln176His
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.528G>C
  hgvsp: ENSP00000384485.2:p.Gln176His
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln176His
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-39934080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934080
    reference: chr 0
allele count: 18
allele frequency: 2.051305427982085e-4
allele num: 87749
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.519C>T
  hgvsp: ENST00000378444.4:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.559C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.519C>T
  hgvsp: ENST00000397354.3:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.519C>T
  hgvsp: ENST00000342274.4:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.519C>T
  hgvsp: ENST00000406200.2:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.519C>T
  hgvsp: ENST00000378455.4:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser173Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

X-39934085-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934085
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934085
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.554G>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.514G>T
  hgvsp: ENSP00000367705.4:p.Ala172Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.514G>T
  hgvsp: ENSP00000384485.2:p.Ala172Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.514G>T
  hgvsp: ENSP00000380512.3:p.Ala172Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.514G>T
  hgvsp: ENSP00000367716.4:p.Ala172Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.514G>T
  hgvsp: ENSP00000345923.4:p.Ala172Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36134
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala172Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

X-39934092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934092
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934092
    reference: chr 0
allele count: 1
allele frequency: 1.139782985319595e-5
allele num: 87736
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.507C>T
  hgvsp: ENST00000378444.4:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.507C>T
  hgvsp: ENST00000378455.4:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.507C>T
  hgvsp: ENST00000406200.2:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.507C>T
  hgvsp: ENST00000397354.3:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.507C>T
  hgvsp: ENST00000342274.4:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.547C>T
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp169Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-39934105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934105
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934105
    reference: chr 0
allele count: 4
allele frequency: 4.559599667149224e-5
allele num: 87727
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.494C>T
  hgvsp: ENSP00000380512.3:p.Ala165Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.534C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.494C>T
  hgvsp: ENSP00000345923.4:p.Ala165Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.494C>T
  hgvsp: ENSP00000367716.4:p.Ala165Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.494C>T
  hgvsp: ENSP00000367705.4:p.Ala165Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.494C>T
  hgvsp: ENSP00000384485.2:p.Ala165Val
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala165Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-39934106-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934106
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934106
    reference: chr 0
allele count: 4
allele frequency: 4.559443747862761e-5
allele num: 87730
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.493G>C
  hgvsp: ENSP00000367705.4:p.Ala165Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.493G>C
  hgvsp: ENSP00000345923.4:p.Ala165Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.493G>C
  hgvsp: ENSP00000384485.2:p.Ala165Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.493G>C
  hgvsp: ENSP00000380512.3:p.Ala165Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.533G>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.493G>C
  hgvsp: ENSP00000367716.4:p.Ala165Pro
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala165Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-39934113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934113
    reference: chr 0
allele count: 1
allele frequency: 1.139977884429042e-5
allele num: 87721
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.486A>G
  hgvsp: ENST00000406200.2:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.526A>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.486A>G
  hgvsp: ENST00000378455.4:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.486A>G
  hgvsp: ENST00000378444.4:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.486A>G
  hgvsp: ENST00000342274.4:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.486A>G
  hgvsp: ENST00000397354.3:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr162Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-39934117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934117
    reference: chr 0
allele count: 56
allele frequency: 6.384021705673799e-4
allele num: 87719
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.482C>T
  hgvsp: ENSP00000384485.2:p.Ala161Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.482C>T
  hgvsp: ENSP00000380512.3:p.Ala161Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.482C>T
  hgvsp: ENSP00000367716.4:p.Ala161Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.522C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.482C>T
  hgvsp: ENSP00000345923.4:p.Ala161Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.482C>T
  hgvsp: ENSP00000367705.4:p.Ala161Val
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala161Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-39934121-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934121
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934121
    reference: chr 0
allele count: 21
allele frequency: 2.416125914676239e-4
allele num: 86916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.478G>T
  hgvsp: ENSP00000384485.2:p.Val160Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.478G>T
  hgvsp: ENSP00000367705.4:p.Val160Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.518G>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.478G>T
  hgvsp: ENSP00000380512.3:p.Val160Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.478G>T
  hgvsp: ENSP00000367716.4:p.Val160Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.478G>T
  hgvsp: ENSP00000345923.4:p.Val160Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19807
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 3
hgvs: p.Val160Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-39934123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934123
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934123
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.516C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.476C>T
  hgvsp: ENSP00000367705.4:p.Ala159Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.476C>T
  hgvsp: ENSP00000380512.3:p.Ala159Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.476C>T
  hgvsp: ENSP00000384485.2:p.Ala159Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.476C>T
  hgvsp: ENSP00000367716.4:p.Ala159Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.476C>T
  hgvsp: ENSP00000345923.4:p.Ala159Val
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Ala159Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS

X-39934143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934143
    reference: chr 0
allele count: 2
allele frequency: 2.280527714113046e-5
allele num: 87699
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.456G>A
  hgvsp: ENST00000342274.4:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.456G>A
  hgvsp: ENST00000378455.4:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.456G>A
  hgvsp: ENST00000397354.3:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.456G>A
  hgvsp: ENST00000406200.2:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.456G>A
  hgvsp: ENST00000378444.4:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.496G>A
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro152Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-39934144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934144
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934144
    reference: chr 0
allele count: 8
allele frequency: 9.12252693996237e-5
allele num: 87695
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.495C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.455C>T
  hgvsp: ENSP00000345923.4:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.455C>T
  hgvsp: ENSP00000367716.4:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.455C>T
  hgvsp: ENSP00000367705.4:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.455C>T
  hgvsp: ENSP00000380512.3:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.455C>T
  hgvsp: ENSP00000384485.2:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro152Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-39934145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934145
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934145
    reference: chr 0
allele count: 1
allele frequency: 1.140237853616264e-5
allele num: 87701
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.454C>T
  hgvsp: ENSP00000345923.4:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.454C>T
  hgvsp: ENSP00000380512.3:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.454C>T
  hgvsp: ENSP00000367716.4:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.494C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.454C>T
  hgvsp: ENSP00000384485.2:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.454C>T
  hgvsp: ENSP00000367705.4:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
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genotype depth: GenotypeDepth
  all individuals: 30
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 475
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genotype depth: GenotypeDepth
  all individuals: 3512
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 5131
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 167
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52800
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro152Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

X-39934155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934155
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934155
    reference: chr 0
allele count: 2
allele frequency: 2.280423702723966e-5
allele num: 87703
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.444A>G
  hgvsp: ENSP00000367716.4:p.Ile148Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.484A>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.444A>G
  hgvsp: ENSP00000367705.4:p.Ile148Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.444A>G
  hgvsp: ENSP00000384485.2:p.Ile148Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.444A>G
  hgvsp: ENSP00000380512.3:p.Ile148Met
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.444A>G
  hgvsp: ENSP00000345923.4:p.Ile148Met
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
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genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5139
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genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile148Met
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-39934190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934190
    reference: chr 0
allele count: 13
allele frequency: 1.482714965156198e-4
allele num: 87677
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.409G>A
  hgvsp: ENSP00000367716.4:p.Val137Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.409G>A
  hgvsp: ENSP00000345923.4:p.Val137Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.409G>A
  hgvsp: ENSP00000380512.3:p.Val137Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.409G>A
  hgvsp: ENSP00000367705.4:p.Val137Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.409G>A
  hgvsp: ENSP00000384485.2:p.Val137Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.449G>A
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20251
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35728
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 5089
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 82
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Val137Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-39934191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934191
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934191
    reference: chr 0
allele count: 71
allele frequency: 8.097812450101508e-4
allele num: 87678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.408C>T
  hgvsp: ENST00000378455.4:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.408C>T
  hgvsp: ENST00000342274.4:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.408C>T
  hgvsp: ENST00000397354.3:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.448C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.408C>T
  hgvsp: ENST00000378444.4:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.408C>T
  hgvsp: ENST00000406200.2:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35698
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20260
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Ala136Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

X-39934195-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934195
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934195
    reference: chr 0
allele count: 3
allele frequency: 3.4228601419346e-5
allele num: 87646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.404C>G
  hgvsp: ENSP00000384485.2:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.404C>G
  hgvsp: ENSP00000367716.4:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.404C>G
  hgvsp: ENSP00000380512.3:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.404C>G
  hgvsp: ENSP00000345923.4:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.404C>G
  hgvsp: ENSP00000367705.4:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.444C>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52584
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser135Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-39934199-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934199
    reference: chr 0
allele count: 1
allele frequency: 1.141383128074601e-5
allele num: 87613
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.400G>C
  hgvsp: ENSP00000367716.4:p.Ala134Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.440G>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.400G>C
  hgvsp: ENSP00000384485.2:p.Ala134Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.400G>C
  hgvsp: ENSP00000345923.4:p.Ala134Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.400G>C
  hgvsp: ENSP00000380512.3:p.Ala134Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.400G>C
  hgvsp: ENSP00000367705.4:p.Ala134Pro
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala134Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-39934199-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934199
    reference: chr 0
allele count: 1
allele frequency: 1.141383128074601e-5
allele num: 87613
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.400G>A
  hgvsp: ENSP00000345923.4:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.400G>A
  hgvsp: ENSP00000367716.4:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.440G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.400G>A
  hgvsp: ENSP00000367705.4:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.400G>A
  hgvsp: ENSP00000380512.3:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.400G>A
  hgvsp: ENSP00000384485.2:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala134Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-39934207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934207
    reference: chr 0
allele count: 1
allele frequency: 1.142896327874098e-5
allele num: 87497
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.392C>T
  hgvsp: ENSP00000367716.4:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.392C>T
  hgvsp: ENSP00000380512.3:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.392C>T
  hgvsp: ENSP00000345923.4:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.392C>T
  hgvsp: ENSP00000384485.2:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.392C>T
  hgvsp: ENSP00000367705.4:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.432C>T
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr131Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-39934212-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934212
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934212
    reference: chr 0
allele count: 2
allele frequency: 2.2893510834354e-5
allele num: 87361
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.387C>A
  hgvsp: ENST00000378455.4:c.387C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.387C>A
  hgvsp: ENST00000378444.4:c.387C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.387C>A
  hgvsp: ENST00000397354.3:c.387C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.427C>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.387C>A
  hgvsp: ENST00000406200.2:c.387C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.387C>A
  hgvsp: ENST00000342274.4:c.387C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19953
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 32
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 79
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 62
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genotype quality: GenotypeQuality
  all individuals: 103
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro129Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

X-39934227-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934227
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934227
    reference: chr 0
allele count: 1
allele frequency: 1.148646320311513e-5
allele num: 87059
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.372C>G
  hgvsp: ENSP00000380512.3:p.Phe124Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.372C>G
  hgvsp: ENSP00000384485.2:p.Phe124Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.372C>G
  hgvsp: ENSP00000345923.4:p.Phe124Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.372C>G
  hgvsp: ENSP00000367716.4:p.Phe124Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.412C>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.372C>G
  hgvsp: ENSP00000367705.4:p.Phe124Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19468
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 973
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genotype quality: GenotypeQuality
  all individuals: 80
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genotype quality: GenotypeQuality
  all individuals: 253
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe124Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

X-39934230-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934230
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934230
    reference: chr 0
allele count: 1
allele frequency: 1.150430260917583e-5
allele num: 86924
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.369G>A
  hgvsp: ENST00000378444.4:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.369G>A
  hgvsp: ENST00000342274.4:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.369G>A
  hgvsp: ENST00000397354.3:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.409G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.369G>A
  hgvsp: ENST00000378455.4:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.369G>A
  hgvsp: ENST00000406200.2:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19260
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34995
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genotype depth: GenotypeDepth
  all individuals: 496
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
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genotype quality: GenotypeQuality
  all individuals: 50774
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln123Gln
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-39934234-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934234
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934234
    reference: chr 0
allele count: 2
allele frequency: 2.302794441054219e-5
allele num: 86851
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.365T>C
  hgvsp: ENSP00000380512.3:p.Met122Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.365T>C
  hgvsp: ENSP00000345923.4:p.Met122Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.365T>C
  hgvsp: ENSP00000384485.2:p.Met122Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.365T>C
  hgvsp: ENSP00000367716.4:p.Met122Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.365T>C
  hgvsp: ENSP00000367705.4:p.Met122Thr
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.405T>C
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met122Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

X-39934235-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934235
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934235
    reference: chr 0
allele count: 1
allele frequency: 1.152777617669775e-5
allele num: 86747
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.364A>G
  hgvsp: ENSP00000345923.4:p.Met122Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.364A>G
  hgvsp: ENSP00000384485.2:p.Met122Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.364A>G
  hgvsp: ENSP00000367705.4:p.Met122Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.364A>G
  hgvsp: ENSP00000367716.4:p.Met122Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.364A>G
  hgvsp: ENSP00000380512.3:p.Met122Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.404A>G
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18991
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34761
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3138
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1880
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met122Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

X-39934252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934252
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934252
    reference: chr 0
allele count: 2
allele frequency: 2.317819395512702e-5
allele num: 86288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.387C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.347C>T
  hgvsp: ENSP00000367705.4:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.347C>T
  hgvsp: ENSP00000345923.4:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.347C>T
  hgvsp: ENSP00000380512.3:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.347C>T
  hgvsp: ENSP00000384485.2:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.347C>T
  hgvsp: ENSP00000367716.4:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 29
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genotype quality: GenotypeQuality
  all individuals: 528
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2448
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser116Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-39934260-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934260
    reference: chr 0
allele count: 1
allele frequency: 1.162696059623054e-5
allele num: 86007
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.339G>T
  hgvsp: ENST00000378455.4:c.339G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.339G>T
  hgvsp: ENST00000378444.4:c.339G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.379G>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.339G>T
  hgvsp: ENST00000406200.2:c.339G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.339G>T
  hgvsp: ENST00000397354.3:c.339G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.339G>T
  hgvsp: ENST00000342274.4:c.339G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 34381
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly113Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

X-39934262-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934262
    reference: chr 0
allele count: 1
allele frequency: 1.162993545385823e-5
allele num: 85985
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.337G>T
  hgvsp: ENSP00000367716.4:p.Gly113Trp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.337G>T
  hgvsp: ENSP00000367705.4:p.Gly113Trp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.337G>T
  hgvsp: ENSP00000380512.3:p.Gly113Trp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.337G>T
  hgvsp: ENSP00000384485.2:p.Gly113Trp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.377G>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.337G>T
  hgvsp: ENSP00000345923.4:p.Gly113Trp
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly113Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-39934289-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934289
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934289
    reference: chr 0
allele count: 2
allele frequency: 2.363647107486852e-5
allele num: 84615
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.310G>C
  hgvsp: ENSP00000384485.2:p.Ala104Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.310G>C
  hgvsp: ENSP00000367705.4:p.Ala104Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.310G>C
  hgvsp: ENSP00000345923.4:p.Ala104Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.310G>C
  hgvsp: ENSP00000380512.3:p.Ala104Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.310G>C
  hgvsp: ENSP00000367716.4:p.Ala104Pro
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.350G>C
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33927
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala104Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

X-39934294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934294
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934294
    reference: chr 0
allele count: 1
allele frequency: 1.178605944888386e-5
allele num: 84846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.305G>A
  hgvsp: ENSP00000345923.4:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.305G>A
  hgvsp: ENSP00000380512.3:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.305G>A
  hgvsp: ENSP00000367705.4:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.305G>A
  hgvsp: ENSP00000384485.2:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.345G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.305G>A
  hgvsp: ENSP00000367716.4:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
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genotype quality: GenotypeQuality
  all individuals: 68
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 379
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genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg102Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-39934302-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934302
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934302
    reference: chr 0
allele count: 1
allele frequency: 1.180944283048726e-5
allele num: 84678
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.297G>T
  hgvsp: ENSP00000367705.4:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.297G>T
  hgvsp: ENSP00000380512.3:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.337G>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.297G>T
  hgvsp: ENSP00000345923.4:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.297G>T
  hgvsp: ENSP00000384485.2:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.297G>T
  hgvsp: ENSP00000367716.4:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33913
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17452
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu99Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

X-39934314-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934314
    reference: chr 0
allele count: 2
allele frequency: 2.374873834827525e-5
allele num: 84215
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.285A>G
  hgvsp: ENST00000342274.4:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.325A>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.285A>G
  hgvsp: ENST00000397354.3:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.285A>G
  hgvsp: ENST00000378455.4:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.285A>G
  hgvsp: ENST00000378444.4:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.285A>G
  hgvsp: ENST00000406200.2:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3954
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly95Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

X-39934314-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934314
    reference: chr 0
allele count: 2
allele frequency: 2.374873834827525e-5
allele num: 84215
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.285A>C
  hgvsp: ENST00000378444.4:c.285A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.285A>C
  hgvsp: ENST00000406200.2:c.285A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.285A>C
  hgvsp: ENST00000342274.4:c.285A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.325A>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.285A>C
  hgvsp: ENST00000397354.3:c.285A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.285A>C
  hgvsp: ENST00000378455.4:c.285A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
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genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 179
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genotype quality: GenotypeQuality
  all individuals: 175
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genotype quality: GenotypeQuality
  all individuals: 3954
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly95Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-39934322-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934322
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934322
    reference: chr 0
allele count: 2
allele frequency: 2.392802450229709e-5
allele num: 83584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.277T>G
  hgvsp: ENSP00000345923.4:p.Leu93Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.277T>G
  hgvsp: ENSP00000384485.2:p.Leu93Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.277T>G
  hgvsp: ENSP00000380512.3:p.Leu93Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.317T>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.277T>G
  hgvsp: ENSP00000367716.4:p.Leu93Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.277T>G
  hgvsp: ENSP00000367705.4:p.Leu93Val
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5364
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genotype quality: GenotypeQuality
  all individuals: 284
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu93Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-39934332-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934332
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934332
    reference: chr 0
allele count: 1
allele frequency: 1.213047539333066e-5
allele num: 82437
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.267C>G
  hgvsp: ENST00000397354.3:c.267C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.267C>G
  hgvsp: ENST00000342274.4:c.267C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.267C>G
  hgvsp: ENST00000406200.2:c.267C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.267C>G
  hgvsp: ENST00000378455.4:c.267C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.307C>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.267C>G
  hgvsp: ENST00000378444.4:c.267C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val89Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-39934334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934334
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934334
    reference: chr 0
allele count: 1
allele frequency: 1.22752102129749e-5
allele num: 81465
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.265G>A
  hgvsp: ENSP00000367716.4:p.Val89Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.305G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.265G>A
  hgvsp: ENSP00000384485.2:p.Val89Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.265G>A
  hgvsp: ENSP00000345923.4:p.Val89Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.265G>A
  hgvsp: ENSP00000367705.4:p.Val89Ile
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.265G>A
  hgvsp: ENSP00000380512.3:p.Val89Ile
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15122
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 258
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genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
  all individuals: 77
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genotype depth: GenotypeDepth
  all individuals: 2713
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genotype depth: GenotypeDepth
  all individuals: 268
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 153
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genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 317
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1016
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genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val89Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-39934337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934337
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934337
    reference: chr 0
allele count: 5
allele frequency: 6.142430682669746e-5
allele num: 81401
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.262A>G
  hgvsp: ENSP00000367705.4:p.Ile88Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.262A>G
  hgvsp: ENSP00000345923.4:p.Ile88Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.302A>G
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.262A>G
  hgvsp: ENSP00000384485.2:p.Ile88Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.262A>G
  hgvsp: ENSP00000380512.3:p.Ile88Val
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.262A>G
  hgvsp: ENSP00000367716.4:p.Ile88Val
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28904
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genotype depth: GenotypeDepth
  all individuals: 2759
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
  all individuals: 15082
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
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genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8771
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1645
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 672
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile88Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

X-39934349-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934349
    reference: chr 0
allele count: 1
allele frequency: 1.256281407035176e-5
allele num: 79600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.290G>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.250G>C
  hgvsp: ENSP00000367705.4:p.Val84Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.250G>C
  hgvsp: ENSP00000367716.4:p.Val84Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.250G>C
  hgvsp: ENSP00000380512.3:p.Val84Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.250G>C
  hgvsp: ENSP00000345923.4:p.Val84Leu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.250G>C
  hgvsp: ENSP00000384485.2:p.Val84Leu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27486
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genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 978
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 570
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val84Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-39934356-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934356
    reference: chr 0
allele count: 1
allele frequency: 1.276959814074651e-5
allele num: 78311
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.243G>A
  hgvsp: ENST00000342274.4:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.283G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.243G>A
  hgvsp: ENST00000397354.3:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.243G>A
  hgvsp: ENST00000378455.4:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.243G>A
  hgvsp: ENST00000378444.4:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.243G>A
  hgvsp: ENST00000406200.2:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Gly81Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

X-39934357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934357
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934357
    reference: chr 0
allele count: 5
allele frequency: 6.385696040868455e-5
allele num: 78300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.242G>A
  hgvsp: ENSP00000367716.4:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.242G>A
  hgvsp: ENSP00000367705.4:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.242G>A
  hgvsp: ENSP00000384485.2:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.242G>A
  hgvsp: ENSP00000380512.3:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.282G>A
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.242G>A
  hgvsp: ENSP00000345923.4:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26064
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34302
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly81Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

X-39934363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934363
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934363
    reference: chr 0
allele count: 1
allele frequency: 1.296142679386147e-5
allele num: 77152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.236G>A
  hgvsp: ENSP00000367716.4:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.236G>A
  hgvsp: ENSP00000384485.2:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.236G>A
  hgvsp: ENSP00000345923.4:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.236G>A
  hgvsp: ENSP00000380512.3:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.236G>A
  hgvsp: ENSP00000367705.4:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.276G>A
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32078
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genotype quality: GenotypeQuality
  all individuals: 460
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg79Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-39934370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934370
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934370
    reference: chr 0
allele count: 1
allele frequency: 1.317505698212145e-5
allele num: 75901
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.229C>T
  hgvsp: ENST00000378455.4:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.229C>T
  hgvsp: ENST00000378444.4:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.229C>T
  hgvsp: ENST00000397354.3:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.229C>T
  hgvsp: ENST00000406200.2:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.269C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.229C>T
  hgvsp: ENST00000342274.4:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu77Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-39934376-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934376
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934376
    reference: chr 0
allele count: 11
allele frequency: 1.467018751166947e-4
allele num: 74982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.223A>T
  hgvsp: ENSP00000384485.2:p.Thr75Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.223A>T
  hgvsp: ENSP00000380512.3:p.Thr75Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.223A>T
  hgvsp: ENSP00000345923.4:p.Thr75Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.263A>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.223A>T
  hgvsp: ENSP00000367705.4:p.Thr75Ser
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.223A>T
  hgvsp: ENSP00000367716.4:p.Thr75Ser
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23933
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Thr75Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

X-39934379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934379
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934379
    reference: chr 0
allele count: 1
allele frequency: 1.340554453321894e-5
allele num: 74596
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.220C>T
  hgvsp: ENSP00000367705.4:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.220C>T
  hgvsp: ENSP00000367716.4:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.220C>T
  hgvsp: ENSP00000380512.3:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.220C>T
  hgvsp: ENSP00000384485.2:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.260C>T
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.220C>T
  hgvsp: ENSP00000345923.4:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg74Cys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-39934388-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934388
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934388
    reference: chr 0
allele count: 1
allele frequency: 1.365989591159315e-5
allele num: 73207
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.211A>C
  hgvsp: ENSP00000367705.4:p.Ser71Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.211A>C
  hgvsp: ENSP00000345923.4:p.Ser71Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.211A>C
  hgvsp: ENSP00000380512.3:p.Ser71Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.211A>C
  hgvsp: ENSP00000384485.2:p.Ser71Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.211A>C
  hgvsp: ENSP00000367716.4:p.Ser71Arg
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.251A>C
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Ser71Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-39934404-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24039934404
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24039934404
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 68811
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000380512
  ensembl transcript: ENST00000397354
  gene symbol: BCOR
  hgvsc: ENST00000397354.3:c.195T>C
  hgvsp: ENST00000397354.3:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367705
  ensembl transcript: ENST00000378444
  gene symbol: BCOR
  hgvsc: ENST00000378444.4:c.195T>C
  hgvsp: ENST00000378444.4:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000345923
  ensembl transcript: ENST00000342274
  gene symbol: BCOR
  hgvsc: ENST00000342274.4:c.195T>C
  hgvsp: ENST00000342274.4:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000384485
  ensembl transcript: ENST00000406200
  gene symbol: BCOR
  hgvsc: ENST00000406200.2:c.195T>C
  hgvsp: ENST00000406200.2:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183337
  ensembl transcript: ENST00000490976
  gene symbol: BCOR
  hgvsc: ENST00000490976.1:n.235T>C
  variant of: http://identifiers.org/hgnc/20893
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183337
  ensembl protein: ENSP00000367716
  ensembl transcript: ENST00000378455
  gene symbol: BCOR
  hgvsc: ENST00000378455.4:c.195T>C
  hgvsp: ENST00000378455.4:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20893
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22954
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp65Asp
num of homozygotes: 0
population: European (Non-Finnish)
reference allele: A

GenotypeQuality
all individuals: 3948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.01987074953192e-5
allele num: 33114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2347
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7495
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

DP
type: SiteQuality
SIO_000300: 8.99444e5

FS
type: SiteQuality
SIO_000300: 1.489e0

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 2.852e1

GenotypeQuality
all individuals: 3661
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1289
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.464343242055938e-4
allele num: 6829
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7589
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6745
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.04e0

MQ
type: SiteQuality
SIO_000300: 5.421e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 9.27738e5

VQSLOD
type: SiteQuality
SIO_000300: -2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.902e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
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GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7709
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2693
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.01328769881216e-4
allele num: 4967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7033
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34709
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 4.304e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.73085e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 415
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7483
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.570786857114017e-5
allele num: 39626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 515
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

FS
type: SiteQuality
SIO_000300: 2.693e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.39e-1

DP
type: SiteQuality
SIO_000300: 1.140659e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.338962436263274e-5
allele num: 42754
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.274859765425803e-4
allele num: 7844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 553
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5945
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3657
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8833
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.2e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -1.845e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

FS
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 1.243386e6

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 614
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.850481125092524e-4
allele num: 43232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6013
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8581
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8937
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 1.849e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.75e-2

FS
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.260718e6

GenotypeQuality
all individuals: 614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 38735
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.313101406365655e-5
allele num: 43232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6013
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8937
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8581
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.75e-2

QD
type: SiteQuality
SIO_000300: 1.849e1

FS
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.260718e6

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
all individuals: 8597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 114
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variant carriers: 1

GenotypeQuality
all individuals: 508
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GenotypeQuality
all individuals: 3758
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variant carriers: 0

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8665
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7961
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.64446637066272e-4
allele num: 6081
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43693
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.774e0

VQSLOD
type: SiteQuality
SIO_000300: -1.194e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.554e0

DP
type: SiteQuality
SIO_000300: 1.279019e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.873e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 117
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.187800822613109e-5
allele num: 45708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9013
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6369
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4047
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8169
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 3.636e0

QD
type: SiteQuality
SIO_000300: 1.263e1

DP
type: SiteQuality
SIO_000300: 1.360261e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.112e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 3850
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6449
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.323763403666552e-4
allele num: 46256
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.856e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 1.383464e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-1

GenotypeQuality
all individuals: 869
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 750
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4160
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 199
bin: 8.25e1
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GenotypeQuality
all individuals: 606
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.673403009670844e-5
allele num: 46118
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.218620521569583e-4
allele num: 8206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.481389578163772e-4
allele num: 4030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9115
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.721170395869191e-3
allele num: 581
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.10331e2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

DP
type: SiteQuality
SIO_000300: 1.396103e6

MQ
type: SiteQuality
SIO_000300: 5.731e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.645e1

QD
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.358080579447714e-3
allele num: 6627
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4457
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47713
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

DP
type: SiteQuality
SIO_000300: 1.45524e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 2.84e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.557e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.324e0

QD
type: SiteQuality
SIO_000300: 1.468e1

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47827
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10077
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.597444089456869e-3
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.461923e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

QD
type: SiteQuality
SIO_000300: 2.902e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.77e-2

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.909820632246556e-5
allele num: 10091
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47863
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.466141e6

MQ
type: SiteQuality
SIO_000300: 5.838e1

VQSLOD
type: SiteQuality
SIO_000300: -2.371e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.719e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.005e0

QD
type: SiteQuality
SIO_000300: 1.021e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.372e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 1

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088075003654131e-5
allele num: 47891
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 1.467623e6

QD
type: SiteQuality
SIO_000300: 1.111e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 4

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.337154529159198e-5
allele num: 47978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.306e1

FS
type: SiteQuality
SIO_000300: 3.181e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.517e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.992e0

DP
type: SiteQuality
SIO_000300: 1.476533e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 41

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 5155
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 293
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 52717
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variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072961373390558e-4
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 8.335417187630241e-4
allele num: 47988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174398120963006e-4
allele num: 8515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.723e1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.481497e6

VQSLOD
type: SiteQuality
SIO_000300: 2.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.337e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47989
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174398120963006e-4
allele num: 8515
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.224e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.478238e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.669e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52760
bin: 6.25e1
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GenotypeQuality
all individuals: 1080
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08385429690756e-5
allele num: 47988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.478602e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.69e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 52779
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083593782556153e-5
allele num: 47994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 9.199999999999999e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.479133e6

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 209
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.01295570955107e-4
allele num: 6638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 1.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

DP
type: SiteQuality
SIO_000300: 1.479784e6

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.753e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

DP
type: SiteQuality
SIO_000300: 1.483418e6

MQRankSum
type: SiteQuality
SIO_000300: -1.188e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 52786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5142
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.835e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.483243e6

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 1.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 2.227e1

DP
type: SiteQuality
SIO_000300: 1.48325e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.660000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.950617283950617e-4
allele num: 10125
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

DP
type: SiteQuality
SIO_000300: 1.483299e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.849e1

FS
type: SiteQuality
SIO_000300: 9.956e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.661e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.95e-1

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -5.991e-1

FS
type: SiteQuality
SIO_000300: 4.557e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.773e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.483226e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

GenotypeQuality
all individuals: 1090
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.524436090225564e-4
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.563e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.483347e6

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.089e0

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
all individuals: 52651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083506958913243e-5
allele num: 47996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

FS
type: SiteQuality
SIO_000300: 3.034e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.48305e6

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.75e1
variant carriers: 15

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.963255630185698e-4
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.91690974247854e-4
allele num: 47996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
SIO_000300: 1.713e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.791e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 1.484296e6

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 52613
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e0

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.482727e6

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 1

GenotypeQuality
all individuals: 5127
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

VQSLOD
type: SiteQuality
SIO_000300: -3.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.338e0

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 1.48262e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 5100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.028636021100226e-4
allele num: 6635
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.454e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.482581e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.370000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.861e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 219
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variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.333506948061417e-5
allele num: 47999
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.473e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

FS
type: SiteQuality
SIO_000300: 3.035e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 2.537e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

DP
type: SiteQuality
SIO_000300: 1.482153e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 52394
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.614e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.481986e6

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 1.166788207104907e-3
allele num: 47995
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.485539e6

QD
type: SiteQuality
SIO_000300: 1.706e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.165e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.129e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.911e1

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4948
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52025
bin: 6.25e1
variant carriers: 2

African
type: Population
allele count: 8
allele frequency: 9.659502535619416e-4
allele num: 8282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4421
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.734826969601346e-4
allele num: 47535
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

FS
type: SiteQuality
SIO_000300: 8.6441e1

MQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.652e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

QD
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.149e0

DP
type: SiteQuality
SIO_000300: 1.506655e6

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 5115
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GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 166
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variant carriers: 1

GenotypeQuality
all individuals: 1046
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GenotypeQuality
all individuals: 76
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47990
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.482509e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.014e0

VQSLOD
type: SiteQuality
SIO_000300: -4.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.818e1

MQRankSum
type: SiteQuality
SIO_000300: -2.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 9.6617e1

GenotypeQuality
all individuals: 52732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167187565112306e-5
allele num: 47994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.109e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.482002e6

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 9.044317154054868e-4
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072961373390558e-4
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 1.482713e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 1.243e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.014e-1

QD
type: SiteQuality
SIO_000300: 1.89e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 113
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.880446596186147e-5
allele num: 10121
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.334e-1

QD
type: SiteQuality
SIO_000300: 3.34e1

DP
type: SiteQuality
SIO_000300: 1.482084e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.976284584980237e-4
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

VQSLOD
type: SiteQuality
SIO_000300: -3.445e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.457e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

FS
type: SiteQuality
SIO_000300: 6.876e0

DP
type: SiteQuality
SIO_000300: 1.482056e6

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.689e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 1033
bin: 7.25e1
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GenotypeQuality
all individuals: 261
bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508068164681044e-4
allele num: 6631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.168837936425222e-5
allele num: 47975
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10093
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.177024482109228e-3
allele num: 8496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 1.116e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.481763e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.046e-1

QD
type: SiteQuality
SIO_000300: 1.639e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 63

GenotypeQuality
all individuals: 5086
bin: 6.75e1
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GenotypeQuality
all individuals: 83
bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 83
bin: 9.25e1
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GenotypeQuality
all individuals: 2
bin: 1.25e1
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GenotypeQuality
all individuals: 1
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.21853878339234e-4
allele num: 9321
num of homozygotes: 0

African
type: Population
allele count: 68
allele frequency: 8.002824526303401e-3
allele num: 8497
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.598e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: 1.767e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.484628e6

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.614e1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5071
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 155
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.532736693358455e-4
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.296e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

FS
type: SiteQuality
SIO_000300: 5.289e0

VQSLOD
type: SiteQuality
SIO_000300: -2.386e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.14e-2

DP
type: SiteQuality
SIO_000300: 1.480969e6

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 6.75e1
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 56
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GenotypeQuality
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.951238929246691e-5
allele num: 10049
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47956
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.335e-1

FS
type: SiteQuality
SIO_000300: 2.313e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.47952e6

MQRankSum
type: SiteQuality
SIO_000300: -9.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.771e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.609e0

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

QD
type: SiteQuality
SIO_000300: 3.121e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085244807740429e-5
allele num: 47956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10049
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.313e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.47952e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.609e0

QD
type: SiteQuality
SIO_000300: 3.121e1

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.335e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.771e0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1005
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variant carriers: 0

GenotypeQuality
all individuals: 5048
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 152
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086463027875146e-5
allele num: 47928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9961
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 1.474147e6

MQ
type: SiteQuality
SIO_000300: 5.869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.33e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.223e1

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 51860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4904
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variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.176673279732693e-5
allele num: 47885
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.22e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.957e0

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

DP
type: SiteQuality
SIO_000300: 1.46918e6

QD
type: SiteQuality
SIO_000300: 2.965e1

VQSLOD
type: SiteQuality
SIO_000300: -1.106e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.023e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 290
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GenotypeQuality
all individuals: 260
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 680
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variant carriers: 0

GenotypeQuality
all individuals: 51226
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090912892568895e-5
allele num: 47826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.516e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.454667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.89e-1

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 974
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47785
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 7.182e0

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.65e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

QD
type: SiteQuality
SIO_000300: 2.476e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.798e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.449697e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9503
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.353771919501e-4
allele num: 8497
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47769
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.079e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

QD
type: SiteQuality
SIO_000300: 1.589e1

VQSLOD
type: SiteQuality
SIO_000300: -1.272e0

DP
type: SiteQuality
SIO_000300: 1.4456e6

GenotypeQuality
all individuals: 4728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 185
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GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 253
bin: 8.25e1
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GenotypeQuality
all individuals: 151
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variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50237
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094723391776116e-5
allele num: 47739
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.448e1

DP
type: SiteQuality
SIO_000300: 1.441175e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e0

FS
type: SiteQuality
SIO_000300: 3.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.18e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
all individuals: 4584
bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
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GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49582
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variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.191300536868632e-4
allele num: 9127
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 2.335e1

DP
type: SiteQuality
SIO_000300: 1.425046e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 6.850000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.436e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.104244260673779e-5
allele num: 47523
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8939
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.207e0

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

DP
type: SiteQuality
SIO_000300: 1.416682e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
SIO_000300: 6.697e0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeQuality
all individuals: 582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8925
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.104642842109694e-5
allele num: 47514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.579e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

QD
type: SiteQuality
SIO_000300: 2.913e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.416248e6

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47017
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.406159769008662e-4
allele num: 8312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4429
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 1.396049e6

QD
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 1.73851e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.558e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.717e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e0

VQSLOD
type: SiteQuality
SIO_000300: -1.437e2

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.25e1
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GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.199040767386091e-4
allele num: 8340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.572e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

FS
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.384289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
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variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 699
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variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514921981517952e-4
allele num: 6601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.378997e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 8.1e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 857
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GenotypeQuality
all individuals: 47145
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.137802766316779e-5
allele num: 46777
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.518141794443601e-4
allele num: 6587
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.366081e6

FS
type: SiteQuality
SIO_000300: 8.162000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

QD
type: SiteQuality
SIO_000300: 1.525e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 801
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GenotypeQuality
all individuals: 524
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GenotypeQuality
all individuals: 428
bin: 3.75e1
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GenotypeQuality
all individuals: 168
bin: 4.25e1
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.203079884504331e-4
allele num: 8312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.137802766316779e-5
allele num: 46777
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 8.162000000000001e0

QD
type: SiteQuality
SIO_000300: 1.525e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

DP
type: SiteQuality
SIO_000300: 1.366081e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.309694658133471e-5
allele num: 46407
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 6.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.424e0

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

DP
type: SiteQuality
SIO_000300: 1.346124e6

GenotypeQuality
all individuals: 7296
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variant carriers: 0

GenotypeQuality
all individuals: 3608
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GenotypeQuality
all individuals: 878
bin: 3.75e1
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GenotypeQuality
all individuals: 339
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 194
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GenotypeQuality
all individuals: 42859
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GenotypeQuality
all individuals: 1240
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4343
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45720
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.927e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.429e1

FS
type: SiteQuality
SIO_000300: 3.144e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.312614e6

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.214741318214033e-5
allele num: 45152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8023
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4273
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.4093e1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 1.287724e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.662e0

QD
type: SiteQuality
SIO_000300: 1.725e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

GenotypeQuality
all individuals: 501
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6453
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.240639041437844e-4
allele num: 8012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7983
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.04e-2

FS
type: SiteQuality
SIO_000300: 1.013e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

QD
type: SiteQuality
SIO_000300: 1.755e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.281145e6

GenotypeQuality
all individuals: 11045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36052
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variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4087
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7937
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8901
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.277791975466394e-4
allele num: 7826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43945
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.394e0

QD
type: SiteQuality
SIO_000300: 1.469e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.186e-1

DP
type: SiteQuality
SIO_000300: 1.231507e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

GenotypeQuality
all individuals: 736
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43097
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.254233036498181e-4
allele num: 7973
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6241
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

QD
type: SiteQuality
SIO_000300: 2.78e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.201893e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12833
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6235
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.198180636777127e-4
allele num: 7695
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8015
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3951
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.139211665527455e-4
allele num: 8778
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.175e0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 3.663e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.200462e6

QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.243008079552517e-4
allele num: 8045
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6145
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8679
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42335
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.503e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.179492e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.644e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.687e0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15467
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
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variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8551
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.236705416769726e-4
allele num: 8086
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.152698e6

GenotypeQuality
all individuals: 29483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 86
bin: 9.75e1
variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16460
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3597
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.496598639455782e-3
allele num: 7350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 1.135613e6

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
all individuals: 30713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16755
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GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 464
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5983
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.458512599877074e-5
allele num: 40675
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8153
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3561
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.313e0

DP
type: SiteQuality
SIO_000300: 1.13497e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
SIO_000300: 1.978e1

GenotypeQuality
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30267
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variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7153
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.51452136085896e-5
allele num: 39769
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.623e1

VQSLOD
type: SiteQuality
SIO_000300: -3.811e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.109962e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.863e1

GenotypeQuality
all individuals: 335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25705
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37187
num of homozygotes: 0