19-5212320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212320
    reference: chr 19
allele count: 3
allele frequency: 2.554800470083287e-5
allele num: 117426
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+28G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+28G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45688
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-5212321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212321
    reference: chr 19
allele count: 84
allele frequency: 7.158928206177132e-4
allele num: 117336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+27C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+27C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 9.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-5212321-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212321
    reference: chr 19
allele count: 1
allele frequency: 8.522533578782301e-6
allele num: 117336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+27C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+27C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4652
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

19-5212323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212323
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212323
    reference: chr 19
allele count: 1
allele frequency: 8.529512111907199e-6
allele num: 117240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+25T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+25T>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45528
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-5212331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212331
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212331
    reference: chr 19
allele count: 2
allele frequency: 1.728309713100588e-5
allele num: 115720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+17C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+17C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

19-5212335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212335
    reference: chr 19
allele count: 1
allele frequency: 8.690362388111584e-6
allele num: 115070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+13C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+13C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4045
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-5212335-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212335
    reference: chr 19
allele count: 2
allele frequency: 1.738072477622317e-5
allele num: 115070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+13C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+13C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

19-5212335-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212335
    reference: chr 19
allele count: 2
allele frequency: 1.738072477622317e-5
allele num: 115070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+13C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+13C>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32107
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

19-5212338-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212338
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212339
    reference: chr 19
allele count: 2
allele frequency: 1.746297848561051e-5
allele num: 114528
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+9dupA
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+9dupA
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

19-5212343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212343
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212343
    reference: chr 19
allele count: 2
allele frequency: 1.766753237575308e-5
allele num: 113202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+5G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+5G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29117
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
hgvs: c.4769+5G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

19-5212344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212344
    reference: chr 19
allele count: 8
allele frequency: 7.097861769142046e-5
allele num: 112710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3710+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4769+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4769+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3428+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4655+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4655+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4772+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3428+4C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4709+4C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
hgvs: c.4769+4C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-5212356-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212356
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212356
    reference: chr 19
allele count: 1
allele frequency: 9.146453005524458e-6
allele num: 109332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4701T>G
  hgvsp: ENST00000262963.6:c.4701T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4647T>G
  hgvsp: ENST00000348075.2:c.4647T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4761T>G
  hgvsp: ENST00000357368.4:c.4761T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4761T>G
  hgvsp: ENST00000587303.1:c.4761T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3702T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4647T>G
  hgvsp: ENST00000588012.1:c.4647T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4764T>G
  hgvsp: ENST00000372412.4:c.4764T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3420T>G
  hgvsp: ENST00000353284.2:c.3420T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3420T>G
  hgvsp: ENST00000592099.1:c.3420T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1587Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

19-5212359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212359
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212359
    reference: chr 19
allele count: 1
allele frequency: 9.279364549115677e-6
allele num: 107766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3417G>A
  hgvsp: ENST00000353284.2:c.3417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4644G>A
  hgvsp: ENST00000588012.1:c.4644G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3417G>A
  hgvsp: ENST00000592099.1:c.3417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4761G>A
  hgvsp: ENST00000372412.4:c.4761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4644G>A
  hgvsp: ENST00000348075.2:c.4644G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4758G>A
  hgvsp: ENST00000357368.4:c.4758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3699G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4758G>A
  hgvsp: ENST00000587303.1:c.4758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4698G>A
  hgvsp: ENST00000262963.6:c.4698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1586Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5212361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212361
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212361
    reference: chr 19
allele count: 2
allele frequency: 1.876630322592752e-5
allele num: 106574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4642G>A
  hgvsp: ENSP00000269907.3:p.Val1548Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4642G>A
  hgvsp: ENSP00000465443.1:p.Val1548Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3415G>A
  hgvsp: ENSP00000327313.2:p.Val1139Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4756G>A
  hgvsp: ENSP00000467537.1:p.Val1586Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4756G>A
  hgvsp: ENSP00000349932.4:p.Val1586Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4696G>A
  hgvsp: ENSP00000262963.6:p.Val1566Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3697G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4759G>A
  hgvsp: ENSP00000361489.4:p.Val1587Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3415G>A
  hgvsp: ENSP00000467398.1:p.Val1139Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val1586Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

19-5212370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212370
    reference: chr 19
allele count: 1
allele frequency: 9.725545116803797e-6
allele num: 102822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4750G>A
  hgvsp: ENSP00000361489.4:p.Gly1584Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4687G>A
  hgvsp: ENSP00000262963.6:p.Gly1563Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4747G>A
  hgvsp: ENSP00000467537.1:p.Gly1583Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3406G>A
  hgvsp: ENSP00000327313.2:p.Gly1136Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4633G>A
  hgvsp: ENSP00000465443.1:p.Gly1545Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3406G>A
  hgvsp: ENSP00000467398.1:p.Gly1136Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4747G>A
  hgvsp: ENSP00000349932.4:p.Gly1583Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4633G>A
  hgvsp: ENSP00000269907.3:p.Gly1545Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3688G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17284
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1583Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-5212371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212371
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212371
    reference: chr 19
allele count: 5
allele frequency: 4.873294346978557e-5
allele num: 102600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4686C>T
  hgvsp: ENST00000262963.6:c.4686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4746C>T
  hgvsp: ENST00000587303.1:c.4746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4746C>T
  hgvsp: ENST00000357368.4:c.4746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3405C>T
  hgvsp: ENST00000353284.2:c.3405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4632C>T
  hgvsp: ENST00000348075.2:c.4632C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4749C>T
  hgvsp: ENST00000372412.4:c.4749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4632C>T
  hgvsp: ENST00000588012.1:c.4632C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3405C>T
  hgvsp: ENST00000592099.1:c.3405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3687C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17315
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1582Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

19-5212372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212372
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212372
    reference: chr 19
allele count: 3
allele frequency: 2.932264685758968e-5
allele num: 102310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4748C>T
  hgvsp: ENSP00000361489.4:p.Ala1583Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3686C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4631C>T
  hgvsp: ENSP00000465443.1:p.Ala1544Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3404C>T
  hgvsp: ENSP00000467398.1:p.Ala1135Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4745C>T
  hgvsp: ENSP00000349932.4:p.Ala1582Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4745C>T
  hgvsp: ENSP00000467537.1:p.Ala1582Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3404C>T
  hgvsp: ENSP00000327313.2:p.Ala1135Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4631C>T
  hgvsp: ENSP00000269907.3:p.Ala1544Val
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4685C>T
  hgvsp: ENSP00000262963.6:p.Ala1562Val
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17274
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12795
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16792
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5460
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala1582Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/19-5212380-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212380
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212380
    reference: chr 19
allele count: 1
allele frequency: 1.004762574603621e-5
allele num: 99526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4677G>T
  hgvsp: ENST00000262963.6:c.4677G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3396G>T
  hgvsp: ENST00000353284.2:c.3396G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4623G>T
  hgvsp: ENST00000588012.1:c.4623G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4623G>T
  hgvsp: ENST00000348075.2:c.4623G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4737G>T
  hgvsp: ENST00000587303.1:c.4737G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4740G>T
  hgvsp: ENST00000372412.4:c.4740G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3678G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4737G>T
  hgvsp: ENST00000357368.4:c.4737G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3396G>T
  hgvsp: ENST00000592099.1:c.3396G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11035
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1579Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-5212380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212380
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212380
    reference: chr 19
allele count: 35558
allele frequency: 3.572734762775556e-1
allele num: 99526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3396G>A
  hgvsp: ENST00000353284.2:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4623G>A
  hgvsp: ENST00000348075.2:c.4623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3678G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4737G>A
  hgvsp: ENST00000357368.4:c.4737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4677G>A
  hgvsp: ENST00000262963.6:c.4677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4737G>A
  hgvsp: ENST00000587303.1:c.4737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4623G>A
  hgvsp: ENST00000588012.1:c.4623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4740G>A
  hgvsp: ENST00000372412.4:c.4740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3396G>A
  hgvsp: ENST00000592099.1:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 603
genotype depth: GenotypeDepth
  all individuals: 11035
  bin: 1.75e1
  variant carriers: 8001
genotype depth: GenotypeDepth
  all individuals: 13151
  bin: 2.25e1
  variant carriers: 5997
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 7.5e0
  variant carriers: 1728
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 1162
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 383
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 1.25e1
  variant carriers: 5784
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 403
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 392
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 2.75e1
  variant carriers: 2984
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 1359
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.75e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 303
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 249
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 2.5e0
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 652
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 4.25e1
  variant carriers: 398
hgvs: p.Pro1579Pro
num of homozygotes: 6005
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-5212381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212381
    reference: chr 19
allele count: 6
allele frequency: 6.729626057112093e-5
allele num: 89158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4676C>T
  hgvsp: ENSP00000262963.6:p.Pro1559Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3395C>T
  hgvsp: ENSP00000467398.1:p.Pro1132Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4736C>T
  hgvsp: ENSP00000467537.1:p.Pro1579Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4622C>T
  hgvsp: ENSP00000269907.3:p.Pro1541Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4736C>T
  hgvsp: ENSP00000349932.4:p.Pro1579Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3395C>T
  hgvsp: ENSP00000327313.2:p.Pro1132Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4739C>T
  hgvsp: ENSP00000361489.4:p.Pro1580Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4622C>T
  hgvsp: ENSP00000465443.1:p.Pro1541Leu
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3677C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15771
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1579Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

19-5212381-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212381
    reference: chr 19
allele count: 1
allele frequency: 1.121604342852015e-5
allele num: 89158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4622C>G
  hgvsp: ENSP00000465443.1:p.Pro1541Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4739C>G
  hgvsp: ENSP00000361489.4:p.Pro1580Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3395C>G
  hgvsp: ENSP00000327313.2:p.Pro1132Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4736C>G
  hgvsp: ENSP00000467537.1:p.Pro1579Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4676C>G
  hgvsp: ENSP00000262963.6:p.Pro1559Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4622C>G
  hgvsp: ENSP00000269907.3:p.Pro1541Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3395C>G
  hgvsp: ENSP00000467398.1:p.Pro1132Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4736C>G
  hgvsp: ENSP00000349932.4:p.Pro1579Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3677C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro1579Arg
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-5212388-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212388
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212388
    reference: chr 19
allele count: 1
allele frequency: 1.163169403991997e-5
allele num: 85972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4669T>C
  hgvsp: ENSP00000262963.6:p.Cys1557Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4615T>C
  hgvsp: ENSP00000269907.3:p.Cys1539Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3388T>C
  hgvsp: ENSP00000467398.1:p.Cys1130Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4729T>C
  hgvsp: ENSP00000467537.1:p.Cys1577Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3388T>C
  hgvsp: ENSP00000327313.2:p.Cys1130Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4615T>C
  hgvsp: ENSP00000465443.1:p.Cys1539Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4729T>C
  hgvsp: ENSP00000349932.4:p.Cys1577Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4732T>C
  hgvsp: ENSP00000361489.4:p.Cys1578Arg
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3670T>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Cys1577Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

19-5212402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212402
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212402
    reference: chr 19
allele count: 1
allele frequency: 1.246416552411816e-5
allele num: 80230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4715G>A
  hgvsp: ENSP00000467537.1:p.Arg1572Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4601G>A
  hgvsp: ENSP00000269907.3:p.Arg1534Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4601G>A
  hgvsp: ENSP00000465443.1:p.Arg1534Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3374G>A
  hgvsp: ENSP00000327313.2:p.Arg1125Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3656G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4715G>A
  hgvsp: ENSP00000349932.4:p.Arg1572Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4718G>A
  hgvsp: ENSP00000361489.4:p.Arg1573Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3374G>A
  hgvsp: ENSP00000467398.1:p.Arg1125Gln
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4655G>A
  hgvsp: ENSP00000262963.6:p.Arg1552Gln
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg1572Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-5212403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212403
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212403
    reference: chr 19
allele count: 2
allele frequency: 2.509473261562398e-5
allele num: 79698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4600C>T
  hgvsp: ENSP00000269907.3:p.Arg1534Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4654C>T
  hgvsp: ENSP00000262963.6:p.Arg1552Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3373C>T
  hgvsp: ENSP00000467398.1:p.Arg1125Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4714C>T
  hgvsp: ENSP00000467537.1:p.Arg1572Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4717C>T
  hgvsp: ENSP00000361489.4:p.Arg1573Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3655C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4600C>T
  hgvsp: ENSP00000465443.1:p.Arg1534Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3373C>T
  hgvsp: ENSP00000327313.2:p.Arg1125Trp
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4714C>T
  hgvsp: ENSP00000349932.4:p.Arg1572Trp
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1572Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-5212403-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212403
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212403
    reference: chr 19
allele count: 1
allele frequency: 1.254736630781199e-5
allele num: 79698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4600C>G
  hgvsp: ENSP00000465443.1:p.Arg1534Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4600C>G
  hgvsp: ENSP00000269907.3:p.Arg1534Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4654C>G
  hgvsp: ENSP00000262963.6:p.Arg1552Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4714C>G
  hgvsp: ENSP00000467537.1:p.Arg1572Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4717C>G
  hgvsp: ENSP00000361489.4:p.Arg1573Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3373C>G
  hgvsp: ENSP00000327313.2:p.Arg1125Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4714C>G
  hgvsp: ENSP00000349932.4:p.Arg1572Gly
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3655C>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3373C>G
  hgvsp: ENSP00000467398.1:p.Arg1125Gly
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11044
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1572Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-5212404-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212404
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212404
    reference: chr 19
allele count: 1
allele frequency: 1.275022312890476e-5
allele num: 78430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3372G>C
  hgvsp: ENST00000592099.1:c.3372G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4713G>C
  hgvsp: ENST00000357368.4:c.4713G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4713G>C
  hgvsp: ENST00000587303.1:c.4713G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3372G>C
  hgvsp: ENST00000353284.2:c.3372G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4653G>C
  hgvsp: ENST00000262963.6:c.4653G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3654G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4599G>C
  hgvsp: ENST00000348075.2:c.4599G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4599G>C
  hgvsp: ENST00000588012.1:c.4599G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4716G>C
  hgvsp: ENST00000372412.4:c.4716G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu1571Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-5212407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212407
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212407
    reference: chr 19
allele count: 1
allele frequency: 1.275542743437333e-5
allele num: 78398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3369C>T
  hgvsp: ENST00000592099.1:c.3369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4713C>T
  hgvsp: ENST00000372412.4:c.4713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4596C>T
  hgvsp: ENST00000348075.2:c.4596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3651C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4710C>T
  hgvsp: ENST00000357368.4:c.4710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4596C>T
  hgvsp: ENST00000588012.1:c.4596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4710C>T
  hgvsp: ENST00000587303.1:c.4710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4650C>T
  hgvsp: ENST00000262963.6:c.4650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3369C>T
  hgvsp: ENST00000353284.2:c.3369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe1570Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-5212422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212422
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212422
    reference: chr 19
allele count: 77
allele frequency: 1.045826202700133e-3
allele num: 73626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4581G>A
  hgvsp: ENST00000588012.1:c.4581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4698G>A
  hgvsp: ENST00000372412.4:c.4698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3636G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3354G>A
  hgvsp: ENST00000353284.2:c.3354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4635G>A
  hgvsp: ENST00000262963.6:c.4635G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4695G>A
  hgvsp: ENST00000357368.4:c.4695G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4695G>A
  hgvsp: ENST00000587303.1:c.4695G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3354G>A
  hgvsp: ENST00000592099.1:c.3354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4581G>A
  hgvsp: ENST00000348075.2:c.4581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17406
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20879
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1565Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-5212423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212423
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212423
    reference: chr 19
allele count: 1
allele frequency: 1.365113167881617e-5
allele num: 73254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4694C>T
  hgvsp: ENSP00000467537.1:p.Thr1565Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4697C>T
  hgvsp: ENSP00000361489.4:p.Thr1566Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4580C>T
  hgvsp: ENSP00000465443.1:p.Thr1527Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3353C>T
  hgvsp: ENSP00000327313.2:p.Thr1118Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4580C>T
  hgvsp: ENSP00000269907.3:p.Thr1527Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4694C>T
  hgvsp: ENSP00000349932.4:p.Thr1565Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3635C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4634C>T
  hgvsp: ENSP00000262963.6:p.Thr1545Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3353C>T
  hgvsp: ENSP00000467398.1:p.Thr1118Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1565Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-5212424-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212424
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212424
    reference: chr 19
allele count: 2
allele frequency: 2.733883755262726e-5
allele num: 73156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3352A>G
  hgvsp: ENSP00000327313.2:p.Thr1118Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4579A>G
  hgvsp: ENSP00000465443.1:p.Thr1527Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4693A>G
  hgvsp: ENSP00000349932.4:p.Thr1565Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4633A>G
  hgvsp: ENSP00000262963.6:p.Thr1545Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4693A>G
  hgvsp: ENSP00000467537.1:p.Thr1565Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4696A>G
  hgvsp: ENSP00000361489.4:p.Thr1566Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3352A>G
  hgvsp: ENSP00000467398.1:p.Thr1118Ala
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3634A>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4579A>G
  hgvsp: ENSP00000269907.3:p.Thr1527Ala
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr1565Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

19-5212428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212428
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212428
    reference: chr 19
allele count: 2
allele frequency: 2.800022400179202e-5
allele num: 71428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4575C>T
  hgvsp: ENST00000348075.2:c.4575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4692C>T
  hgvsp: ENST00000372412.4:c.4692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4629C>T
  hgvsp: ENST00000262963.6:c.4629C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4689C>T
  hgvsp: ENST00000587303.1:c.4689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3348C>T
  hgvsp: ENST00000353284.2:c.3348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3630C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3348C>T
  hgvsp: ENST00000592099.1:c.3348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4689C>T
  hgvsp: ENST00000357368.4:c.4689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4575C>T
  hgvsp: ENST00000588012.1:c.4575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr1563Tyr
num of homozygotes: 1
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

19-5212433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212433
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212433
    reference: chr 19
allele count: 1
allele frequency: 1.440092165898618e-5
allele num: 69440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4687G>A
  hgvsp: ENSP00000361489.4:p.Glu1563Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4570G>A
  hgvsp: ENSP00000269907.3:p.Glu1524Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4684G>A
  hgvsp: ENSP00000349932.4:p.Glu1562Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3343G>A
  hgvsp: ENSP00000327313.2:p.Glu1115Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4684G>A
  hgvsp: ENSP00000467537.1:p.Glu1562Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3625G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4624G>A
  hgvsp: ENSP00000262963.6:p.Glu1542Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4570G>A
  hgvsp: ENSP00000465443.1:p.Glu1524Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3343G>A
  hgvsp: ENSP00000467398.1:p.Glu1115Lys
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu1562Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-5212434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212434
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212434
    reference: chr 19
allele count: 2
allele frequency: 2.891259721860815e-5
allele num: 69174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4569C>T
  hgvsp: ENST00000348075.2:c.4569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3624C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4683C>T
  hgvsp: ENST00000587303.1:c.4683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3342C>T
  hgvsp: ENST00000592099.1:c.3342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3342C>T
  hgvsp: ENST00000353284.2:c.3342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4683C>T
  hgvsp: ENST00000357368.4:c.4683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4569C>T
  hgvsp: ENST00000588012.1:c.4569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4623C>T
  hgvsp: ENST00000262963.6:c.4623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4686C>T
  hgvsp: ENST00000372412.4:c.4686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16878
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22410
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro1561Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-5212439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212439
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212439
    reference: chr 19
allele count: 6
allele frequency: 8.931761343336905e-5
allele num: 67176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3337G>A
  hgvsp: ENSP00000327313.2:p.Val1113Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3337G>A
  hgvsp: ENSP00000467398.1:p.Val1113Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4564G>A
  hgvsp: ENSP00000269907.3:p.Val1522Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3619G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4681G>A
  hgvsp: ENSP00000361489.4:p.Val1561Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4678G>A
  hgvsp: ENSP00000467537.1:p.Val1560Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4564G>A
  hgvsp: ENSP00000465443.1:p.Val1522Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4618G>A
  hgvsp: ENSP00000262963.6:p.Val1540Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4678G>A
  hgvsp: ENSP00000349932.4:p.Val1560Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23175
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1560Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

19-5212440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212440
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212440
    reference: chr 19
allele count: 6
allele frequency: 8.971291866028708e-5
allele num: 66880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4677C>T
  hgvsp: ENST00000587303.1:c.4677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4680C>T
  hgvsp: ENST00000372412.4:c.4680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3336C>T
  hgvsp: ENST00000592099.1:c.3336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4563C>T
  hgvsp: ENST00000588012.1:c.4563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4677C>T
  hgvsp: ENST00000357368.4:c.4677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4563C>T
  hgvsp: ENST00000348075.2:c.4563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3618C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3336C>T
  hgvsp: ENST00000353284.2:c.3336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4617C>T
  hgvsp: ENST00000262963.6:c.4617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23279
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16478
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly1559Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/19-5212449-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212449
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212449
    reference: chr 19
allele count: 1
allele frequency: 1.552843256001739e-5
allele num: 64398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4608G>T
  hgvsp: ENST00000262963.6:c.4608G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4668G>T
  hgvsp: ENST00000357368.4:c.4668G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4671G>T
  hgvsp: ENST00000372412.4:c.4671G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4554G>T
  hgvsp: ENST00000348075.2:c.4554G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4668G>T
  hgvsp: ENST00000587303.1:c.4668G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4554G>T
  hgvsp: ENST00000588012.1:c.4554G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3327G>T
  hgvsp: ENST00000353284.2:c.3327G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3609G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3327G>T
  hgvsp: ENST00000592099.1:c.3327G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro1556Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

19-5212449-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212449
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212449
    reference: chr 19
allele count: 1
allele frequency: 1.552843256001739e-5
allele num: 64398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3327G>C
  hgvsp: ENST00000592099.1:c.3327G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4554G>C
  hgvsp: ENST00000588012.1:c.4554G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3327G>C
  hgvsp: ENST00000353284.2:c.3327G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4668G>C
  hgvsp: ENST00000357368.4:c.4668G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4668G>C
  hgvsp: ENST00000587303.1:c.4668G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3609G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4554G>C
  hgvsp: ENST00000348075.2:c.4554G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4671G>C
  hgvsp: ENST00000372412.4:c.4671G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4608G>C
  hgvsp: ENST00000262963.6:c.4608G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1556Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-5212449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212449
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212449
    reference: chr 19
allele count: 43
allele frequency: 6.677226000807478e-4
allele num: 64398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3327G>A
  hgvsp: ENST00000353284.2:c.3327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4671G>A
  hgvsp: ENST00000372412.4:c.4671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4668G>A
  hgvsp: ENST00000587303.1:c.4668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4554G>A
  hgvsp: ENST00000588012.1:c.4554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4608G>A
  hgvsp: ENST00000262963.6:c.4608G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3609G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4554G>A
  hgvsp: ENST00000348075.2:c.4554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4668G>A
  hgvsp: ENST00000357368.4:c.4668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3327G>A
  hgvsp: ENST00000592099.1:c.3327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15785
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24094
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 2
hgvs: p.Pro1556Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

19-5212455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212455
    reference: chr 19
allele count: 6
allele frequency: 9.419448020346007e-5
allele num: 63698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3603G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4665G>A
  hgvsp: ENST00000372412.4:c.4665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4548G>A
  hgvsp: ENST00000588012.1:c.4548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4602G>A
  hgvsp: ENST00000262963.6:c.4602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4548G>A
  hgvsp: ENST00000348075.2:c.4548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3321G>A
  hgvsp: ENST00000592099.1:c.3321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4662G>A
  hgvsp: ENST00000587303.1:c.4662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4662G>A
  hgvsp: ENST00000357368.4:c.4662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3321G>A
  hgvsp: ENST00000353284.2:c.3321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24707
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Ala1554Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

19-5212458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212458
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212458
    reference: chr 19
allele count: 4
allele frequency: 6.329915179136599e-5
allele num: 63192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4662G>A
  hgvsp: ENST00000372412.4:c.4662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4545G>A
  hgvsp: ENST00000588012.1:c.4545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4545G>A
  hgvsp: ENST00000348075.2:c.4545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4659G>A
  hgvsp: ENST00000357368.4:c.4659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3318G>A
  hgvsp: ENST00000592099.1:c.3318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3318G>A
  hgvsp: ENST00000353284.2:c.3318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4659G>A
  hgvsp: ENST00000587303.1:c.4659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3600G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4599G>A
  hgvsp: ENST00000262963.6:c.4599G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24920
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14920
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1553Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

19-5212459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212459
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212459
    reference: chr 19
allele count: 3
allele frequency: 4.810159055926116e-5
allele num: 62368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4658C>T
  hgvsp: ENSP00000467537.1:p.Thr1553Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4544C>T
  hgvsp: ENSP00000269907.3:p.Thr1515Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4598C>T
  hgvsp: ENSP00000262963.6:p.Thr1533Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4661C>T
  hgvsp: ENSP00000361489.4:p.Thr1554Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4544C>T
  hgvsp: ENSP00000465443.1:p.Thr1515Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3317C>T
  hgvsp: ENSP00000327313.2:p.Thr1106Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4658C>T
  hgvsp: ENSP00000349932.4:p.Thr1553Met
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3599C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3317C>T
  hgvsp: ENSP00000467398.1:p.Thr1106Met
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24924
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1553Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-5212464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212464
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212464
    reference: chr 19
allele count: 2
allele frequency: 3.226014581585909e-5
allele num: 61996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4653G>A
  hgvsp: ENST00000587303.1:c.4653G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3312G>A
  hgvsp: ENST00000353284.2:c.3312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4656G>A
  hgvsp: ENST00000372412.4:c.4656G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4593G>A
  hgvsp: ENST00000262963.6:c.4593G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3594G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3312G>A
  hgvsp: ENST00000592099.1:c.3312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4539G>A
  hgvsp: ENST00000348075.2:c.4539G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4653G>A
  hgvsp: ENST00000357368.4:c.4653G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4539G>A
  hgvsp: ENST00000588012.1:c.4539G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gln1551Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-5212472-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212472
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212472
    reference: chr 19
allele count: 1
allele frequency: 1.672352665730149e-5
allele num: 59796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3304C>A
  hgvsp: ENSP00000327313.2:p.Gln1102Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3304C>A
  hgvsp: ENSP00000467398.1:p.Gln1102Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3586C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4645C>A
  hgvsp: ENSP00000467537.1:p.Gln1549Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4531C>A
  hgvsp: ENSP00000269907.3:p.Gln1511Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4648C>A
  hgvsp: ENSP00000361489.4:p.Gln1550Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4585C>A
  hgvsp: ENSP00000262963.6:p.Gln1529Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4645C>A
  hgvsp: ENSP00000349932.4:p.Gln1549Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4531C>A
  hgvsp: ENSP00000465443.1:p.Gln1511Lys
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25643
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14505
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1549Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

19-5212474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212474
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212474
    reference: chr 19
allele count: 4
allele frequency: 6.869547296833139e-5
allele num: 58228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3302G>A
  hgvsp: ENSP00000327313.2:p.Arg1101His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3302G>A
  hgvsp: ENSP00000467398.1:p.Arg1101His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4529G>A
  hgvsp: ENSP00000465443.1:p.Arg1510His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4646G>A
  hgvsp: ENSP00000361489.4:p.Arg1549His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4583G>A
  hgvsp: ENSP00000262963.6:p.Arg1528His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4643G>A
  hgvsp: ENSP00000349932.4:p.Arg1548His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4643G>A
  hgvsp: ENSP00000467537.1:p.Arg1548His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4529G>A
  hgvsp: ENSP00000269907.3:p.Arg1510His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3584G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25716
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14327
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1548His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-5212475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212475
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212475
    reference: chr 19
allele count: 5
allele frequency: 8.547300762419228e-5
allele num: 58498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3301C>T
  hgvsp: ENSP00000327313.2:p.Arg1101Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4528C>T
  hgvsp: ENSP00000465443.1:p.Arg1510Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4582C>T
  hgvsp: ENSP00000262963.6:p.Arg1528Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3301C>T
  hgvsp: ENSP00000467398.1:p.Arg1101Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4645C>T
  hgvsp: ENSP00000361489.4:p.Arg1549Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4642C>T
  hgvsp: ENSP00000467537.1:p.Arg1548Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3583C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4642C>T
  hgvsp: ENSP00000349932.4:p.Arg1548Cys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4528C>T
  hgvsp: ENSP00000269907.3:p.Arg1510Cys
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25895
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg1548Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

19-5212476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212476
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212476
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 58386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4641C>T
  hgvsp: ENST00000357368.4:c.4641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4644C>T
  hgvsp: ENST00000372412.4:c.4644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4527C>T
  hgvsp: ENST00000588012.1:c.4527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3300C>T
  hgvsp: ENST00000592099.1:c.3300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3300C>T
  hgvsp: ENST00000353284.2:c.3300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3582C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4641C>T
  hgvsp: ENST00000587303.1:c.4641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4527C>T
  hgvsp: ENST00000348075.2:c.4527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4581C>T
  hgvsp: ENST00000262963.6:c.4581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26000
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1547Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5212481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212481
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212481
    reference: chr 19
allele count: 4
allele frequency: 7.035317292809905e-5
allele num: 56856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4522G>A
  hgvsp: ENSP00000465443.1:p.Glu1508Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4639G>A
  hgvsp: ENSP00000361489.4:p.Glu1547Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4576G>A
  hgvsp: ENSP00000262963.6:p.Glu1526Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4522G>A
  hgvsp: ENSP00000269907.3:p.Glu1508Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3295G>A
  hgvsp: ENSP00000327313.2:p.Glu1099Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4636G>A
  hgvsp: ENSP00000467537.1:p.Glu1546Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3577G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3295G>A
  hgvsp: ENSP00000467398.1:p.Glu1099Lys
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4636G>A
  hgvsp: ENSP00000349932.4:p.Glu1546Lys
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13867
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Glu1546Lys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-5212482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212482
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212482
    reference: chr 19
allele count: 10028
allele frequency: 1.728190811015752e-1
allele num: 58026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3294C>T
  hgvsp: ENST00000353284.2:c.3294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3576C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3294C>T
  hgvsp: ENST00000592099.1:c.3294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4635C>T
  hgvsp: ENST00000587303.1:c.4635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4521C>T
  hgvsp: ENST00000348075.2:c.4521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4635C>T
  hgvsp: ENST00000357368.4:c.4635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4521C>T
  hgvsp: ENST00000588012.1:c.4521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4638C>T
  hgvsp: ENST00000372412.4:c.4638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4575C>T
  hgvsp: ENST00000262963.6:c.4575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 25140
  bin: 7.5e0
  variant carriers: 2875
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.25e1
  variant carriers: 581
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 14229
  bin: 1.25e1
  variant carriers: 4276
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 1.75e1
  variant carriers: 2019
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.5e0
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.25e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 3.25e1
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 4692
  bin: 7.5e0
  variant carriers: 96
hgvs: p.Arg1545Arg
num of homozygotes: 708
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-5212482-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212482
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212482
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 58026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4638C>G
  hgvsp: ENST00000372412.4:c.4638C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3294C>G
  hgvsp: ENST00000353284.2:c.3294C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4635C>G
  hgvsp: ENST00000357368.4:c.4635C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4521C>G
  hgvsp: ENST00000588012.1:c.4521C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3294C>G
  hgvsp: ENST00000592099.1:c.3294C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4635C>G
  hgvsp: ENST00000587303.1:c.4635C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4575C>G
  hgvsp: ENST00000262963.6:c.4575C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4521C>G
  hgvsp: ENST00000348075.2:c.4521C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3576C>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25140
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1545Arg
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-5212483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212483
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212483
    reference: chr 19
allele count: 1
allele frequency: 1.948861864671032e-5
allele num: 51312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3293G>A
  hgvsp: ENSP00000327313.2:p.Arg1098His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4637G>A
  hgvsp: ENSP00000361489.4:p.Arg1546His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4634G>A
  hgvsp: ENSP00000349932.4:p.Arg1545His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4634G>A
  hgvsp: ENSP00000467537.1:p.Arg1545His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4520G>A
  hgvsp: ENSP00000269907.3:p.Arg1507His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4574G>A
  hgvsp: ENSP00000262963.6:p.Arg1525His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3293G>A
  hgvsp: ENSP00000467398.1:p.Arg1098His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4520G>A
  hgvsp: ENSP00000465443.1:p.Arg1507His
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3575G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1545His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

19-5212484-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212484
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212484
    reference: chr 19
allele count: 1
allele frequency: 1.969201685636643e-5
allele num: 50782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4519C>A
  hgvsp: ENSP00000465443.1:p.Arg1507Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4636C>A
  hgvsp: ENSP00000361489.4:p.Arg1546Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4633C>A
  hgvsp: ENSP00000349932.4:p.Arg1545Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3292C>A
  hgvsp: ENSP00000327313.2:p.Arg1098Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4519C>A
  hgvsp: ENSP00000269907.3:p.Arg1507Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3574C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4573C>A
  hgvsp: ENSP00000262963.6:p.Arg1525Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4633C>A
  hgvsp: ENSP00000467537.1:p.Arg1545Ser
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3292C>A
  hgvsp: ENSP00000467398.1:p.Arg1098Ser
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1545Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

19-5212494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212494
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212494
    reference: chr 19
allele count: 2
allele frequency: 4.126433935792688e-5
allele num: 48468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3282C>T
  hgvsp: ENST00000353284.2:c.3282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4626C>T
  hgvsp: ENST00000372412.4:c.4626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3282C>T
  hgvsp: ENST00000592099.1:c.3282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4623C>T
  hgvsp: ENST00000587303.1:c.4623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4563C>T
  hgvsp: ENST00000262963.6:c.4563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4509C>T
  hgvsp: ENST00000348075.2:c.4509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4509C>T
  hgvsp: ENST00000588012.1:c.4509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3564C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4623C>T
  hgvsp: ENST00000357368.4:c.4623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27830
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1541Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

19-5212508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212508
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212508
    reference: chr 19
allele count: 2
allele frequency: 4.485914229319936e-5
allele num: 44584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-6C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-6C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26210
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11769
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 1.25e1
  variant carriers: 0
hgvs: c.4615-6C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

19-5212514-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212514
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212514
    reference: chr 19
allele count: 1
allele frequency: 2.316316130825535e-5
allele num: 43172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-12T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-12T>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-5212522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212522
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212522
    reference: chr 19
allele count: 3
allele frequency: 7.566967663824849e-5
allele num: 39646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-20G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-20G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

19-5212530-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212530
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212530
    reference: chr 19
allele count: 8
allele frequency: 2.499218994064355e-4
allele num: 32010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-28T>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-28T>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22466
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5058
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-5212531-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212531
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212531
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 32124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-29G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-29G>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22472
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

19-5212534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212534
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212534
    reference: chr 19
allele count: 658
allele frequency: 2.161487418697852e-2
allele num: 30442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-32G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-32G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 1.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 20978
  bin: 2.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22626
  bin: 7.5e0
  variant carriers: 420
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 1.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 16552
  bin: 2.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 34
num of homozygotes: 40
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-5212535-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212535
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212535
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 28814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-33C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-33C>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22671
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5901
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-5212554-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5212554
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5212554
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 24828
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4615-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4501-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4615-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3274-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3556-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4555-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4501-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4618-52C>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3274-52C>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23756
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22297
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7472
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-5214330-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214330
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214330
    reference: chr 19
allele count: 5
allele frequency: 4.194701253376734e-5
allele num: 119198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+42G>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+42G>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3798
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

19-5214343-T-TCAGCCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214343
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214350
    reference: chr 19
allele count: 4
allele frequency: 3.350308228357009e-5
allele num: 119392
alternate allele: TCAGCCCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+22_3555+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+22_4617+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+22_3273+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+22_4614+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+22_3273+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+22_4500+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+22_4614+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+22_4500+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+22_4554+28dupGGGGCTG
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11583
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13241
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13959
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-5214345-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214345
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214345
    reference: chr 19
allele count: 1
allele frequency: 8.373386029842748e-6
allele num: 119426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+27T>G
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+27T>G
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-5214346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214346
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214346
    reference: chr 19
allele count: 1
allele frequency: 8.373946976167747e-6
allele num: 119418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+26C>T
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+26C>T
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-5214353-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214352
    reference: chr 19
allele count: 1
allele frequency: 8.361483661660925e-6
allele num: 119596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+18delG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+18delG
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: GC
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-5214354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214354
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214354
    reference: chr 19
allele count: 143
allele frequency: 1.195892152271359e-3
allele num: 119576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+18G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+18G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 12046
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13450
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

19-5214355-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214355
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214355
    reference: chr 19
allele count: 1
allele frequency: 8.360225391676559e-6
allele num: 119614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+17G>C
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+17G>C
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

19-5214356-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214356
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214356
    reference: chr 19
allele count: 3
allele frequency: 2.507564486200037e-5
allele num: 119638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+16G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+16G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-5214356-CCAGCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214356
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214350
    reference: chr 19
allele count: 10
allele frequency: 8.358548287333456e-5
allele num: 119638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+10_4554+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+10_4500+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+10_4500+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+10_4614+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+10_3555+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+10_4617+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+10_3273+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+10_4614+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+10_3273+15delAGGCTG
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14039
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: CCAGCCT
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5214357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5214357
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5214357
    reference: chr 19
allele count: 2
allele frequency: 1.671737604065666e-5
allele num: 119636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467537
  ensembl transcript: ENST00000587303
  gene symbol: PTPRS
  hgvsc: ENST00000587303.1:c.4614+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000361489
  ensembl transcript: ENST00000372412
  gene symbol: PTPRS
  hgvsc: ENST00000372412.4:c.4617+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000467398
  ensembl transcript: ENST00000592099
  gene symbol: PTPRS
  hgvsc: ENST00000592099.1:c.3273+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000327313
  ensembl transcript: ENST00000353284
  gene symbol: PTPRS
  hgvsc: ENST00000353284.2:c.3273+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000465443
  ensembl transcript: ENST00000588012
  gene symbol: PTPRS
  hgvsc: ENST00000588012.1:c.4500+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000262963
  ensembl transcript: ENST00000262963
  gene symbol: PTPRS
  hgvsc: ENST00000262963.6:c.4554+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000269907
  ensembl transcript: ENST00000348075
  gene symbol: PTPRS
  hgvsc: ENST00000348075.2:c.4500+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl protein: ENSP00000349932
  ensembl transcript: ENST00000357368
  gene symbol: PTPRS
  hgvsc: ENST00000357368.4:c.4614+15G>A
  variant of: http://identifiers.org/hgnc/9681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105426
  ensembl transcript: ENST00000588552
  gene symbol: PTPRS
  hgvsc: ENST00000588552.1:n.3555+15G>A
  variant of: http://identifiers.org/hgnc/9681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14219
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7377
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 303
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.003814495081309e-4
allele num: 9962
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231830500123183e-4
allele num: 16236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 6.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.405139e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 45293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.088917926700268e-4
allele num: 64284
num of homozygotes: 0

East Asian
type: Population
allele count: 73
allele frequency: 8.580159849553362e-3
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.457606291472106e-4
allele num: 16276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.401257e6

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.997e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555597038143239e-5
allele num: 64284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.401257e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.997e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

GenotypeQuality
all individuals: 797
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

FS
type: SiteQuality
SIO_000300: 4.629e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.568e0

QD
type: SiteQuality
SIO_000300: 1.176e1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.248e-1

DP
type: SiteQuality
SIO_000300: 1.397161e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.152783908190933e-5
allele num: 63436
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.529e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.63e-1

DP
type: SiteQuality
SIO_000300: 1.363557e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

BaseQRankSum
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SIO_000300: -3.109e0

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 2.764e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019575856443719e-4
allele num: 9808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 1.350916e6

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

FS
type: SiteQuality
SIO_000300: 1.877e0

QD
type: SiteQuality
SIO_000300: 1.146e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.17148203355428e-5
allele num: 63062
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 1.877e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.350916e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.17148203355428e-5
allele num: 63062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

FS
type: SiteQuality
SIO_000300: 1.877e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.350916e6

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.049600327936052e-4
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.362e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

FS
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 1.471e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.336843e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.220819376449369e-5
allele num: 62096
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.31211e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Latino
type: Population
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allele frequency: 2.791736460078169e-4
allele num: 10746
num of homozygotes: 0

African
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allele frequency: 2.081165452653486e-4
allele num: 9610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.242544731610338e-4
allele num: 8048
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Other
type: Population
allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.23258445126879e-5
allele num: 61870
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.775e0

QD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.379992344009187e-5
allele num: 15674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60080
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 3.096e0

ClippingRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7440
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.687080338765732e-5
allele num: 59274
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15504
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 741
bin: 7.75e1
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GenotypeQuality
all individuals: 4081
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4986
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 7.5e0
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GenotypeQuality
all individuals: 410
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 461
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.704855428259683e-5
allele num: 58656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.491820306413918e-5
allele num: 15404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

FS
type: SiteQuality
SIO_000300: 4.776e0

QD
type: SiteQuality
SIO_000300: 1.494e1

DP
type: SiteQuality
SIO_000300: 1.163925e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.122334455667789e-4
allele num: 8910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.374e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.110983e6

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 2393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 13128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.052545155993432e-4
allele num: 4872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56478
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.255808707421611e-4
allele num: 8866
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.295336787564767e-3
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.031353135313531e-4
allele num: 9696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15002
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.109312e6

QD
type: SiteQuality
SIO_000300: 1.462e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

FS
type: SiteQuality
SIO_000300: 9.510999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

GenotypeQuality
all individuals: 1056
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
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variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 759
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.458151064450277e-4
allele num: 6858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.547231385903302e-5
allele num: 56382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.344e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.76e0

DP
type: SiteQuality
SIO_000300: 1.108202e6

GenotypeQuality
all individuals: 489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24150
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078981441519206e-4
allele num: 9268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 1.376041e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 1.765e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 580
bin: 1.25e1
variant carriers: 154

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 341

GenotypeQuality
all individuals: 489
bin: 8.25e1
variant carriers: 420

GenotypeQuality
all individuals: 1191
bin: 5.25e1
variant carriers: 709

GenotypeQuality
all individuals: 1355
bin: 6.75e1
variant carriers: 558

GenotypeQuality
all individuals: 666
bin: 5.75e1
variant carriers: 423

GenotypeQuality
all individuals: 10329
bin: 2.25e1
variant carriers: 316

GenotypeQuality
all individuals: 876
bin: 7.5e0
variant carriers: 126

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 373

GenotypeQuality
all individuals: 755
bin: 1.75e1
variant carriers: 231

GenotypeQuality
all individuals: 2263
bin: 3.25e1
variant carriers: 528

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 483

GenotypeQuality
all individuals: 8963
bin: 6.25e1
variant carriers: 649

GenotypeQuality
all individuals: 24150
bin: 9.75e1
variant carriers: 23970

GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 330

GenotypeQuality
all individuals: 1221
bin: 4.75e1
variant carriers: 711

Other
type: Population
allele count: 274
allele frequency: 3.702702702702703e-1
allele num: 740
num of homozygotes: 49

Latino
type: Population
allele count: 3978
allele frequency: 4.292188174363401e-1
allele num: 9268
num of homozygotes: 763

European (Non-Finnish)
type: Population
allele count: 20122
allele frequency: 3.68224572704315e-1
allele num: 54646
num of homozygotes: 3227

African
type: Population
allele count: 3765
allele frequency: 4.315680880330124e-1
allele num: 8724
num of homozygotes: 754

South Asian
type: Population
allele count: 4795
allele frequency: 3.228956228956229e-1
allele num: 14850
num of homozygotes: 779

East Asian
type: Population
allele count: 485
allele frequency: 7.393292682926829e-2
allele num: 6560
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 2139
allele frequency: 4.514563106796117e-1
allele num: 4738
num of homozygotes: 421

DP
type: SiteQuality
SIO_000300: 1.376041e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 1.765e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
all individuals: 2390
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 15653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.138731952291275e-4
allele num: 6372
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.604845011721803e-4
allele num: 7678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13812
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.253761283851555e-4
allele num: 7976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.049432307250891e-5
allele num: 48794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 9.833e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 1.533e1

DP
type: SiteQuality
SIO_000300: 1.082668e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 4068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22098
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.049432307250891e-5
allele num: 48794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

DP
type: SiteQuality
SIO_000300: 1.082668e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.833e0

QD
type: SiteQuality
SIO_000300: 1.533e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

GenotypeQuality
all individuals: 23948
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46930
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.343724805159903e-4
allele num: 7442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 1.9036e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.043006e6

QD
type: SiteQuality
SIO_000300: 9.27e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.289062857666072e-5
allele num: 43686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

FS
type: SiteQuality
SIO_000300: 4.662e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.84255e5

QD
type: SiteQuality
SIO_000300: 2.704e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.306273062730627e-5
allele num: 43360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.724393635099645e-5
allele num: 12946
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 9.57e0

DP
type: SiteQuality
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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SIO_000300: -1.882e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.724393635099645e-5
allele num: 12946
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.882e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

DP
type: SiteQuality
SIO_000300: 9.83474e5

FS
type: SiteQuality
SIO_000300: 9.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

QD
type: SiteQuality
SIO_000300: 6.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.562e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42690
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.465416178194607e-4
allele num: 6824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.744e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.238e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

DP
type: SiteQuality
SIO_000300: 9.71026e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.274e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42678
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.463271875914545e-4
allele num: 6834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

BaseQRankSum
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SIO_000300: -1.164e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 9.70023e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 25
allele frequency: 3.848522167487685e-3
allele num: 6496
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.065817067268914e-5
allele num: 12398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.576292559899117e-4
allele num: 6344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 1.226594572944828e-3
allele num: 39948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 3.589375448671931e-4
allele num: 2786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.514964036014285e-5
allele num: 39762
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.037022112527074e-5
allele num: 39706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12360
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.26518e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.351e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 2.886e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.640419947506562e-4
allele num: 12192
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38674
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

QD
type: SiteQuality
SIO_000300: 2.835e1

MQ
type: SiteQuality
SIO_000300: 5.886e1

DP
type: SiteQuality
SIO_000300: 9.13983e5

VQSLOD
type: SiteQuality
SIO_000300: -1.216e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1853
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.660706683695189e-5
allele num: 37584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

DP
type: SiteQuality
SIO_000300: 9.04654e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.023e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
all individuals: 553
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.622323166774821e-4
allele num: 6164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.369601606963509e-5
allele num: 11948
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.02886e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
all individuals: 1812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
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GenotypeQuality
all individuals: 343
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variant carriers: 0

GenotypeQuality
all individuals: 3397
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GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1523
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 7385
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.70590242238144e-4
allele num: 11724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.099989000109999e-4
allele num: 36364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

DP
type: SiteQuality
SIO_000300: 8.87542e5

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
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variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1230
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.135227661759672e-4
allele num: 11684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36208
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 8.87697e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 2.247e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
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GenotypeQuality
all individuals: 1206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.726519337016575e-4
allele num: 5792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.78463e5

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
all individuals: 2923
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28883
bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
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GenotypeQuality
all individuals: 258
bin: 5.75e1
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GenotypeQuality
all individuals: 2410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.726519337016575e-4
allele num: 5792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 8.78463e5

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28883
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7362
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3737
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2410
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 2

East Asian
type: Population
allele count: 27
allele frequency: 6.373937677053824e-3
allele num: 4236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 7.012622720897616e-4
allele num: 11408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.012650948821162e-4
allele num: 34780
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.726519337016575e-4
allele num: 5792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.78463e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 3053
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.816200508536142e-4
allele num: 5506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.833922261484099e-5
allele num: 11320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 9.583133684714902e-4
allele num: 4174
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.86e1

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 8.77308e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.266e0

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
all individuals: 2374
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 285
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3811
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.173777803861729e-4
allele num: 34078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 1.056e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.78239e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 612
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31452
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33564
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.856665428889714e-4
allele num: 5386
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.921259842519685e-4
allele num: 4064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 8.80571e5

FS
type: SiteQuality
SIO_000300: 7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4074
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.695491500369549e-4
allele num: 5412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.134e0

FS
type: SiteQuality
SIO_000300: 8.039e0

QD
type: SiteQuality
SIO_000300: 6.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

DP
type: SiteQuality
SIO_000300: 8.69945e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 448
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4876
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2956
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7618
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.121293464011486e-5
allele num: 32038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 9.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 2.171e0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 8.49822e5

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2369
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3812
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.269558769002595e-5
allele num: 10788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.632674030310815e-5
allele num: 31144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.609e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.665e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 3.439e0

DP
type: SiteQuality
SIO_000300: 8.44671e5

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

GenotypeQuality
all individuals: 2688
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.847745750184775e-4
allele num: 10824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.892565200467108e-4
allele num: 5138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31294
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.623294858342078e-4
allele num: 3812
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 8.43353e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

QD
type: SiteQuality
SIO_000300: 1.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.385e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
all individuals: 30405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7361
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 8.41036e5

MQ
type: SiteQuality
SIO_000300: 5.875e1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 3.933e0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 1128
bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 29981
bin: 2.25e1
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GenotypeQuality
all individuals: 489
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.735229759299781e-4
allele num: 3656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.885330170027679e-5
allele num: 30348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 8.3252e5

FS
type: SiteQuality
SIO_000300: 3.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 305

GenotypeQuality
all individuals: 536
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variant carriers: 446

GenotypeQuality
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variant carriers: 243

GenotypeQuality
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variant carriers: 260

GenotypeQuality
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variant carriers: 182

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 361

GenotypeQuality
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bin: 2.75e1
variant carriers: 190

GenotypeQuality
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variant carriers: 8082

GenotypeQuality
all individuals: 6886
bin: 6.25e1
variant carriers: 266

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 260

Other
type: Population
allele count: 75
allele frequency: 1.69683257918552e-1
allele num: 442
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 318
allele frequency: 1.970260223048327e-1
allele num: 1614
num of homozygotes: 12

Latino
type: Population
allele count: 1998
allele frequency: 3.730395817774458e-1
allele num: 5356
num of homozygotes: 265

South Asian
type: Population
allele count: 2037
allele frequency: 1.878111746265904e-1
allele num: 10846
num of homozygotes: 175

East Asian
type: Population
allele count: 333
allele frequency: 9.009740259740259e-2
allele num: 3696
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 4527
allele frequency: 1.465997409326425e-1
allele num: 30880
num of homozygotes: 208

African
type: Population
allele count: 740
allele frequency: 1.425269645608629e-1
allele num: 5192
num of homozygotes: 36

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 8.448e5

FS
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
all individuals: 6886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 634
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GenotypeQuality
all individuals: 25351
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.54e-2

FS
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

QD
type: SiteQuality
SIO_000300: 1.429e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 8.448e5

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 185
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GenotypeQuality
all individuals: 384
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.626341746446185e-5
allele num: 27576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

QD
type: SiteQuality
SIO_000300: 6.38e0

DP
type: SiteQuality
SIO_000300: 7.41158e5

FS
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 6820
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 603
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 185
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.944640753828033e-4
allele num: 3396
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.06e0

FS
type: SiteQuality
SIO_000300: 9.890000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.057e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 7.36339e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 911
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variant carriers: 3

GenotypeQuality
all individuals: 1947
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GenotypeQuality
all individuals: 172
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1389
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GenotypeQuality
all individuals: 238
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.680491551459293e-5
allele num: 26040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

FS
type: SiteQuality
SIO_000300: 4.89e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

DP
type: SiteQuality
SIO_000300: 7.14701e5

GenotypeQuality
all individuals: 6162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 901
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GenotypeQuality
all individuals: 1153
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.430281571404485e-5
allele num: 23724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

DP
type: SiteQuality
SIO_000300: 6.67216e5

MQ
type: SiteQuality
SIO_000300: 5.868e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.128e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5715
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 410
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GenotypeQuality
all individuals: 313
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GenotypeQuality
all individuals: 1085
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GenotypeQuality
all individuals: 900
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 176
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GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 3.604902667627974e-4
allele num: 2774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.135999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.994e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

DP
type: SiteQuality
SIO_000300: 6.46744e5

FS
type: SiteQuality
SIO_000300: 5.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.494e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.442862639476722e-4
allele num: 20792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.426e0

DP
type: SiteQuality
SIO_000300: 6.04003e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.239e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.86e0

GenotypeQuality
all individuals: 4295
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 5.305039787798408e-3
allele num: 1508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 5.39839e5

FS
type: SiteQuality
SIO_000300: 1.9679e1

VQSLOD
type: SiteQuality
SIO_000300: -2.251e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 1645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 900
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.458e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

DP
type: SiteQuality
SIO_000300: 5.38635e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.294e1

MQ
type: SiteQuality
SIO_000300: 5.861e1

GenotypeQuality
all individuals: 3630
bin: 1.75e1
variant carriers: 42

GenotypeQuality
all individuals: 5281
bin: 1.25e1
variant carriers: 20

GenotypeQuality
all individuals: 243
bin: 7.75e1
variant carriers: 22

GenotypeQuality
all individuals: 1961
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 40

GenotypeQuality
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bin: 3.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 27

GenotypeQuality
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bin: 7.5e0
variant carriers: 24

GenotypeQuality
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bin: 6.25e1
variant carriers: 16

GenotypeQuality
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bin: 9.75e1
variant carriers: 597

GenotypeQuality
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bin: 5.75e1
variant carriers: 31

GenotypeQuality
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bin: 9.25e1
variant carriers: 43

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 35

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 22

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

African
type: Population
allele count: 624
allele frequency: 1.712403951701427e-1
allele num: 3644
num of homozygotes: 40

Latino
type: Population
allele count: 23
allele frequency: 1.649928263988522e-2
allele num: 1394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267427122940431e-4
allele num: 7890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 5.92573084013695e-4
allele num: 15188
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.23728813559322e-3
allele num: 236
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

DP
type: SiteQuality
SIO_000300: 5.29298e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
all individuals: 2520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.11958e5

VQSLOD
type: SiteQuality
SIO_000300: -1.984e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.11e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1174
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.326e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.759e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.52e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 4.85378e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.795085767269356e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

DP
type: SiteQuality
SIO_000300: 1.872534e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.158e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.549e0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825483753194597e-4
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529005229197884e-5
allele num: 65402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.022e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 5.31e0

DP
type: SiteQuality
SIO_000300: 1.906625e6

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-2

FS
type: SiteQuality
SIO_000300: 1.0218e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.09e0

MQ
type: SiteQuality
SIO_000300: 5.481e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5030
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.528350909368791e-5
allele num: 65430
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.910945e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3378
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

DP
type: SiteQuality
SIO_000300: 1.913438e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 1.546e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 1.926906e6

QD
type: SiteQuality
SIO_000300: 6.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 140

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

South Asian
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allele count: 2
allele frequency: 1.214771622934888e-4
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 141
allele frequency: 1.633835457705678e-2
allele num: 8630
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 1.930755e6

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 1.241e0

QD
type: SiteQuality
SIO_000300: 1.072e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.258e0

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.931669e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5773573390296e-5
allele num: 65540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16462
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10210
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65540
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.317497103128621e-4
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
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allele count: 8
allele frequency: 7.835455435847208e-4
allele num: 10210
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.0e0

FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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