X-114422744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422744
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12101
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.494+45C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.494+45C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 371
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

X-114422766-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422766
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422766
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.494+23A>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.494+23A>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
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  allele num: 412
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-114422800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422800
    reference: chr 0
allele count: 1
allele frequency: 4.658746797111577e-5
allele num: 21465
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.483C>T
  hgvsp: ENST00000317135.8:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.483C>T
  hgvsp: ENST00000538422.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Tyr161Tyr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 201
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

X-114422845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422845
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 35370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.438C>T
  hgvsp: ENST00000538422.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.438C>T
  hgvsp: ENST00000317135.8:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ile146Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18110
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-114422887-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422887
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422887
    reference: chr 0
allele count: 1
allele frequency: 2.139357764799007e-5
allele num: 46743
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.396A>G
  hgvsp: ENST00000317135.8:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.396A>G
  hgvsp: ENST00000538422.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu132Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2563
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-114422900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422900
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422900
    reference: chr 0
allele count: 1
allele frequency: 2.099208598358419e-5
allele num: 47637
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.383C>T
  hgvsp: ENSP00000439366.1:p.Ser128Phe
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.383C>T
  hgvsp: ENSP00000325091.8:p.Ser128Phe
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser128Phe
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 3.966679888932963e-5
  allele num: 25210
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

X-114422919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422919
    reference: chr 0
allele count: 29
allele frequency: 6.323731437667633e-4
allele num: 45859
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.364C>T
  hgvsp: ENSP00000439366.1:p.Arg122Cys
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.364C>T
  hgvsp: ENSP00000325091.8:p.Arg122Cys
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg122Cys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 27
  allele frequency: 1.0980073200488e-3
  allele num: 24590
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-114422928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422928
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 42978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.355T>C
  hgvsp: ENSP00000439366.1:p.Ser119Pro
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.355T>C
  hgvsp: ENSP00000325091.8:p.Ser119Pro
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser119Pro
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3717
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

X-114422963-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422963
    reference: chr 0
allele count: 1
allele frequency: 2.771772271190199e-5
allele num: 36078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-30T>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-30T>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 3905
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
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site quality: QD
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site quality: DP
site quality: VQSLOD
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site quality: InbreedingCoeff

X-114422964-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422964
    reference: chr 0
allele count: 1
allele frequency: 2.849571139543499e-5
allele num: 35093
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-31A>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-31A>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  allele num: 3056
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population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
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site quality: MQRankSum
site quality: FS
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X-114422973-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114422973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114422973
    reference: chr 0
allele count: 1
allele frequency: 3.087277330122565e-5
allele num: 32391
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-40G>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-40G>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
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site quality: DP
site quality: VQSLOD
site quality: MQ
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X-114423959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114423959
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114423959
    reference: chr 0
allele count: 1
allele frequency: 9.963136395337252e-5
allele num: 10037
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1026G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1026G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
population: African
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population: Other
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reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
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X-114423979-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114423979
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114423979
    reference: chr 0
allele count: 1
allele frequency: 9.424182452172274e-5
allele num: 10611
alternate allele: C
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.-26T>C
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1046A>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1046A>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

X-114423994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114423994
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114423994
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11592
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1061C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1061C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.-11G>A
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

X-114424002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424002
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12451
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1069C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1069C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

X-114424003-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424003
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424003
    reference: chr 0
allele count: 1
allele frequency: 7.99488327470419e-5
allele num: 12508
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.-2A>G
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1070T>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1070T>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

X-114424009-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424009
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424009
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13197
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.5T>C
  hgvsp: ENSP00000417451.2:p.Met2Thr
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1076A>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1076A>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met2Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-114424014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424014
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13705
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.10G>A
  hgvsp: ENSP00000417451.2:p.Ala4Thr
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1081C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1081C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15509
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30607
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28540
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala4Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-114424021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424021
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424021
    reference: chr 0
allele count: 62
allele frequency: 4.18551272530885e-3
allele num: 14813
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1088C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1088C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.17G>A
  hgvsp: ENSP00000417451.2:p.Arg6His
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 367
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 85
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  variant carriers: 4
hgvs: p.Arg6His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

X-114424039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424039
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424039
    reference: chr 0
allele count: 1
allele frequency: 5.750100626760969e-5
allele num: 17391
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1106A>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.35T>C
  hgvsp: ENSP00000417451.2:p.Ile12Thr
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1106A>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19384
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 321
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  variant carriers: 1
hgvs: p.Ile12Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-114424040-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424040
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424040
    reference: chr 0
allele count: 2
allele frequency: 1.142726545537653e-4
allele num: 17502
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.36T>C
  hgvsp: ENST00000424776.3:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1107A>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1107A>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19504
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 322
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 84
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  variant carriers: 0
hgvs: p.Ile12Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-114424049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424049
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 18653
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1116G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.45C>T
  hgvsp: ENST00000424776.3:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1116G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7905
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu15Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-114424061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424061
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424061
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 19748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1128G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.57C>T
  hgvsp: ENST00000424776.3:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1128G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr19Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-114424064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424064
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424064
    reference: chr 0
allele count: 2
allele frequency: 9.981036031540073e-5
allele num: 20038
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.60C>T
  hgvsp: ENST00000424776.3:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1131G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1131G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp20Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-114424072-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424072
    reference: chr 0
allele count: 1
allele frequency: 4.885675200312683e-5
allele num: 20468
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1139G>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.68C>G
  hgvsp: ENSP00000417451.2:p.Ala23Gly
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1139G>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala23Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

X-114424077-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424077
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 20752
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.73A>G
  hgvsp: ENSP00000417451.2:p.Lys25Glu
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1144T>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1144T>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys25Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

X-114424081-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424081
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424081
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 20714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.77C>A
  hgvsp: ENSP00000417451.2:p.Ala26Asp
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1148G>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1148G>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala26Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

X-114424089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424089
    reference: chr 0
allele count: 1
allele frequency: 4.834654805646877e-5
allele num: 20684
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1156C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1156C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.85G>A
  hgvsp: ENSP00000417451.2:p.Gly29Ser
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
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  variant carriers: 0
hgvs: p.Gly29Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-114424102-ACAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424102
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424099
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 20621
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1172_350-1170delATG
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1172_350-1170delATG
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.104_106delTCA
  hgvsp: ENSP00000417451.2:p.Ile35del
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: inframe deletion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile35del
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: ACAT
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS

X-114424110-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424110
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 20406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1177T>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.106A>G
  hgvsp: ENSP00000417451.2:p.Lys36Glu
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1177T>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28215
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12494
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys36Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

X-114424132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424132
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424132
    reference: chr 0
allele count: 67
allele frequency: 3.438366006363543e-3
allele num: 19486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.128G>A
  hgvsp: ENSP00000417451.2:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1199C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1199C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29236
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
  all individuals: 1199
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg43Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-114424148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424148
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424148
    reference: chr 0
allele count: 2686
allele frequency: 1.411752338904657e-1
allele num: 19026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1215C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1215C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.144G>A
  hgvsp: ENST00000424776.3:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 411
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 7.5e0
  variant carriers: 1891
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 28454
  bin: 2.5e0
  variant carriers: 1381
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 25489
  bin: 7.5e0
  variant carriers: 744
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 508
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 6.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 7996
  bin: 6.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 502
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 268
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genotype quality: GenotypeQuality
  all individuals: 126
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  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 178
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  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 2571
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 2.25e1
  variant carriers: 281
hgvs: p.Ser48Ser
num of homozygotes: 151
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

X-114424151-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424151
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424151
    reference: chr 0
allele count: 1
allele frequency: 5.452562704471101e-5
allele num: 18340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.147G>A
  hgvsp: ENST00000424776.3:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1218C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1218C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg49Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-114424153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424153
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424153
    reference: chr 0
allele count: 1
allele frequency: 5.484861781483107e-5
allele num: 18232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1220C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1220C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.149G>A
  hgvsp: ENSP00000417451.2:p.Gly50Asp
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9014
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly50Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-114424159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424159
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424159
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1226G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1226G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.155C>T
  hgvsp: ENSP00000417451.2:p.Ala52Val
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala52Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS

X-114424173-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424173
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424173
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17461
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.169G>C
  hgvsp: ENSP00000417451.2:p.Glu57Gln
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1240C>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1240C>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu57Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

X-114424187-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424187
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17146
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.183C>T
  hgvsp: ENST00000424776.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1254G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1254G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp61Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-114424199-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424199
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16884
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.195C>T
  hgvsp: ENST00000424776.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1266G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1266G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala65Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

X-114424215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424215
    reference: chr 0
allele count: 1
allele frequency: 5.998080614203455e-5
allele num: 16672
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.211G>A
  hgvsp: ENSP00000417451.2:p.Gly71Ser
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1282C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1282C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24899
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly71Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-114424248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424248
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424248
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15769
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.244G>A
  hgvsp: ENSP00000417451.2:p.Ala82Thr
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1315C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1315C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala82Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-114424264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424264
    reference: chr 0
allele count: 1
allele frequency: 6.77323218639935e-5
allele num: 14764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1331G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.260C>T
  hgvsp: ENSP00000417451.2:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1331G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 403
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 194
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro87Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

X-114424265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424265
    reference: chr 0
allele count: 4
allele frequency: 2.716468590831919e-4
allele num: 14725
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1332C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1332C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.261G>A
  hgvsp: ENST00000424776.3:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 197
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro87Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-114424276-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424276
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424276
    reference: chr 0
allele count: 6
allele frequency: 4.86815415821501e-4
allele num: 12325
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1343C>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1343C>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.272G>C
  hgvsp: ENSP00000417451.2:p.Ser91Thr
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 193
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Ser91Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

X-114424289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424289
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424289
    reference: chr 0
allele count: 1
allele frequency: 8.051529790660226e-5
allele num: 12420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.285C>T
  hgvsp: ENST00000424776.3:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1356G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1356G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3161
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
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  variant carriers: 0
hgvs: p.Val95Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-114424292-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424292
    reference: chr 0
allele count: 1
allele frequency: 8.107669855683477e-5
allele num: 12334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1359C>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.288G>T
  hgvsp: ENST00000424776.3:c.288G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1359C>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 190
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  variant carriers: 1
hgvs: p.Pro96Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-114424293-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424293
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424293
    reference: chr 0
allele count: 3
allele frequency: 2.424830261881668e-4
allele num: 12372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1360G>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.289C>G
  hgvsp: ENSP00000417451.2:p.Pro97Ala
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1360G>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 489
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  variant carriers: 0
hgvs: p.Pro97Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-114424301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424301
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424301
    reference: chr 0
allele count: 1
allele frequency: 8.470986869970351e-5
allele num: 11805
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1368G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.297C>T
  hgvsp: ENST00000424776.3:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1368G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro99Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-114424302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424302
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424302
    reference: chr 0
allele count: 1
allele frequency: 8.477449983045101e-5
allele num: 11796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1369C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1369C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.298G>A
  hgvsp: ENSP00000417451.2:p.Gly100Ser
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly100Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-114424308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424308
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424308
    reference: chr 0
allele count: 8
allele frequency: 7.002801120448179e-4
allele num: 11424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1375C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.304G>A
  hgvsp: ENSP00000417451.2:p.Gly102Ser
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1375C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly102Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-114424315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424315
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424315
    reference: chr 0
allele count: 3
allele frequency: 2.714686453714596e-4
allele num: 11051
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.311G>A
  hgvsp: ENSP00000417451.2:p.Arg104His
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1382C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1382C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg104His
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-114424317-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424317
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424317
    reference: chr 0
allele count: 1
allele frequency: 9.111617312072893e-5
allele num: 10975
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1384A>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.313T>C
  hgvsp: ENSP00000417451.2:p.Ser105Pro
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1384A>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 6452
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 523
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser105Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-114424333-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424333
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424333
    reference: chr 0
allele count: 1
allele frequency: 9.664637092877162e-5
allele num: 10347
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1400C>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.329G>C
  hgvsp: ENSP00000417451.2:p.Arg110Thr
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1400C>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg110Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-114424343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424343
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424343
    reference: chr 0
allele count: 17
allele frequency: 1.694239585409607e-3
allele num: 10034
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1410C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1410C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.339G>A
  hgvsp: ENST00000424776.3:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 580
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Gly113Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-114424359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424359
    reference: chr 0
allele count: 1
allele frequency: 1.053629754504267e-4
allele num: 9491
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1426G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.355C>T
  hgvsp: ENSP00000417451.2:p.Gln119Ter
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1426G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1939
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln119Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-114424364-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424364
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424365
    reference: chr 0
allele count: 5
allele frequency: 5.347021708908138e-4
allele num: 9351
alternate allele: AC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.366dupC
  hgvsp: ENSP00000417451.2:p.Ser123LeufsTer6
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1432dupG
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1432dupG
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser123LeufsTer6
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

X-114424369-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424369
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424367
    reference: chr 0
allele count: 1
allele frequency: 1.073306858430825e-4
allele num: 9317
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.369_370delTC
  hgvsp: ENSP00000417451.2:p.Gln124GlyfsTer4
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1438_350-1437delAG
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1438_350-1437delAG
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln124GlyfsTer4
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: CCT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-114424370-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424370
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424370
    reference: chr 0
allele count: 1
allele frequency: 1.073652566029633e-4
allele num: 9314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1437G>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.366C>G
  hgvsp: ENST00000424776.3:c.366C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1437G>C
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4655
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro122Pro
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-114424391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424391
    reference: chr 0
allele count: 2
allele frequency: 2.286236854138089e-4
allele num: 8748
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.387C>T
  hgvsp: ENST00000424776.3:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1458G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1458G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3873
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
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genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp129Asp
num of homozygotes: 1
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

X-114424395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424395
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424395
    reference: chr 0
allele count: 1
allele frequency: 1.181334908446545e-4
allele num: 8465
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1462G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1462G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.391C>T
  hgvsp: ENSP00000417451.2:p.Arg131Cys
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
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genotype quality: GenotypeQuality
  all individuals: 4291
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg131Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-114424396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424396
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424396
    reference: chr 0
allele count: 2
allele frequency: 2.369949046095509e-4
allele num: 8439
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1463C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.392G>A
  hgvsp: ENSP00000417451.2:p.Arg131His
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1463C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg131His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

X-114424397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424397
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424397
    reference: chr 0
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1464G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1464G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.393C>T
  hgvsp: ENST00000424776.3:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 43
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg131Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-114424403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424403
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424403
    reference: chr 0
allele count: 2
allele frequency: 2.399808015358771e-4
allele num: 8334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1470G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1470G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.399C>T
  hgvsp: ENST00000424776.3:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Tyr133Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-114424405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424405
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424405
    reference: chr 0
allele count: 4
allele frequency: 4.877453969028168e-4
allele num: 8201
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.401C>T
  hgvsp: ENSP00000417451.2:p.Ala134Val
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1472G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1472G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala134Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-114424407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424407
    reference: chr 0
allele count: 1
allele frequency: 1.221597849987784e-4
allele num: 8186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1474C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.403G>A
  hgvsp: ENSP00000417451.2:p.Gly135Arg
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1474C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly135Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

X-114424415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424415
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424415
    reference: chr 0
allele count: 1
allele frequency: 1.250312578144536e-4
allele num: 7998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1482G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.411C>T
  hgvsp: ENST00000424776.3:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1482G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 3691
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genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe137Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-114424438-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424438
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424438
    reference: chr 0
allele count: 1177
allele frequency: 1.620096352374398e-1
allele num: 7265
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1505G>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1505G>C
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.434C>G
  hgvsp: ENSP00000417451.2:p.Pro145Arg
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 534
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  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 2.5e0
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.5e0
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 206
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 218
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  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 26
hgvs: p.Pro145Arg
num of homozygotes: 62
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-114424442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424442
    reference: chr 0
allele count: 1
allele frequency: 1.466060694912769e-4
allele num: 6821
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.438G>A
  hgvsp: ENSP00000417451.2:p.Met146Ile
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1509C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1509C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met146Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-114424453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424453
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424453
    reference: chr 0
allele count: 1
allele frequency: 1.575299306868305e-4
allele num: 6348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1520C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1520C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.449G>A
  hgvsp: ENSP00000417451.2:p.Arg150His
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg150His
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
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site quality: QD

X-114424454-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424454
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424454
    reference: chr 0
allele count: 4
allele frequency: 6.397952655150352e-4
allele num: 6252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1521G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1521G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.450C>T
  hgvsp: ENST00000424776.3:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg150Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-114424455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424455
    reference: chr 0
allele count: 1
allele frequency: 1.590836780146357e-4
allele num: 6286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.451G>A
  hgvsp: ENSP00000417451.2:p.Gly151Arg
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1522C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1522C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly151Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-114424459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424459
    reference: chr 0
allele count: 1
allele frequency: 1.655629139072848e-4
allele num: 6040
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1526G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.455C>T
  hgvsp: ENSP00000417451.2:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1526G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 83
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  variant carriers: 0
hgvs: p.Pro152Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-114424466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424466
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424466
    reference: chr 0
allele count: 5
allele frequency: 8.634087376964255e-4
allele num: 5791
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.462G>A
  hgvsp: ENST00000424776.3:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1533C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1533C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 127
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro154Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

X-114424467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424467
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424467
    reference: chr 0
allele count: 2
allele frequency: 3.468007629616785e-4
allele num: 5767
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.463C>T
  hgvsp: ENSP00000417451.2:p.Arg155Trp
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1534G>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1534G>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 384
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genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3709
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg155Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

X-114424468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424468
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424468
    reference: chr 0
allele count: 2
allele frequency: 3.439972480220158e-4
allele num: 5814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1535C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1535C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.464G>A
  hgvsp: ENSP00000417451.2:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/26859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
hgvs: p.Arg155Gln
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-114424505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424505
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424505
    reference: chr 0
allele count: 1089
allele frequency: 1.800297569846256e-1
allele num: 6049
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1572C>T
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.501G>A
  hgvsp: ENST00000424776.3:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1572C>T
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.5e0
  variant carriers: 385
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1825
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  variant carriers: 340
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 58
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 7
genotype depth: GenotypeDepth
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  variant carriers: 114
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 2.5e0
  variant carriers: 161
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.25e1
  variant carriers: 41
hgvs: p.Pro167Pro
num of homozygotes: 63
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-114424505-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424505
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424505
    reference: chr 0
allele count: 1
allele frequency: 1.653165812530997e-4
allele num: 6049
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1572C>G
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.501G>C
  hgvsp: ENST00000424776.3:c.501G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1572C>G
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 821
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro167Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-114424508-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114424508
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114424508
    reference: chr 0
allele count: 595
allele frequency: 9.620048504446241e-2
allele num: 6185
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000439366
  ensembl transcript: ENST00000538422
  gene symbol: LRCH2
  hgvsc: ENST00000538422.1:c.350-1575C>A
  variant of: http://identifiers.org/hgnc/29292
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175718
  ensembl protein: ENSP00000417451
  ensembl transcript: ENST00000424776
  gene symbol: RBMXL3
  hgvsc: ENST00000424776.3:c.504G>T
  hgvsp: ENST00000424776.3:c.504G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130224
  ensembl protein: ENSP00000325091
  ensembl transcript: ENST00000317135
  gene symbol: LRCH2
  hgvsc: ENST00000317135.8:c.350-1575C>A
  variant of: http://identifiers.org/hgnc/29292
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 2.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 2.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 7.5e0
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 7.5e0
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.75e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 6.75e1
  variant carriers: 15
hgvs: p.Ser168Ser
num of homozygotes: 19
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 881
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6845
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 123
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1271
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.83e-2

QD
type: SiteQuality
SIO_000300: 1.03e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.047e0

DP
type: SiteQuality
SIO_000300: 4.11788e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2061
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1091
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

DP
type: SiteQuality
SIO_000300: 4.63929e5

VQSLOD
type: SiteQuality
SIO_000300: -2.49e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11339
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.009081735620585e-3
allele num: 991
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2925
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.389e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

DP
type: SiteQuality
SIO_000300: 6.36354e5

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.334e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4115
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2899
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

QD
type: SiteQuality
SIO_000300: 1.8e1

DP
type: SiteQuality
SIO_000300: 7.93863e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.072490327835471e-5
allele num: 24555
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3935
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

DP
type: SiteQuality
SIO_000300: 9.1144e5

VQSLOD
type: SiteQuality
SIO_000300: -1.582e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

QD
type: SiteQuality
SIO_000300: 1.789e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5137
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 351
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5178
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.825e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 9.10767e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2575
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.996805111821086e-4
allele num: 5008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.941176470588235e-3
allele num: 340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 8.62374e5

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.526e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 1.182e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4799
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4649
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3777
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

DP
type: SiteQuality
SIO_000300: 7.98102e5

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3163
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4241
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2273
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.0625221485344e-5
allele num: 19753
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 265
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2478
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.41e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 6.45397e5

VQSLOD
type: SiteQuality
SIO_000300: -9.284e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19253
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4171
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2353
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2243
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.662406815761449e-4
allele num: 3756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 261
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 1.971e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.134e1

DP
type: SiteQuality
SIO_000300: 6.35549e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2177
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.563791874554526e-4
allele num: 2806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 257
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

FS
type: SiteQuality
SIO_000300: 3.865e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

DP
type: SiteQuality
SIO_000300: 6.10452e5

VQSLOD
type: SiteQuality
SIO_000300: -9.862e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

Latino
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allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1167
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 109
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.83452577508714e-4
allele num: 5451
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.621e1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-2

FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 117
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1793
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.04602510460251e-3
allele num: 956
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.77757e5

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.644e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1867
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1350
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 311
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1259
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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FS
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DP
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6485
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 127
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1671
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1297
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.39e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1298
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 1957
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 1685
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 127
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.41e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1931
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6794
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.5863e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.18e-2

QD
type: SiteQuality
SIO_000300: 2.543e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6989
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 367
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 3.71359e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

FS
type: SiteQuality
SIO_000300: 2.597e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 3

Other
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allele frequency: 0.0e0
allele num: 149
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.544529262086514e-3
allele num: 393
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African
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allele count: 59
allele frequency: 2.735280482151136e-2
allele num: 2157
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.700877785280216e-4
allele num: 7405
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 725
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.82e-2

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3768
num of homozygotes: 0

African
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allele count: 1
allele frequency: 4.378283712784588e-4
allele num: 2284
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1406
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MQ
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FS
type: SiteQuality
SIO_000300: 2.363e0

VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.36e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 3823
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 484
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European (Non-Finnish)
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allele frequency: 2.373323840037973e-4
allele num: 8427
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 2302
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 176
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East Asian
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allele num: 882
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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FS
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DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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East Asian
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European (Finnish)
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Other
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African
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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African
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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African
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European (Finnish)
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Latino
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FS
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
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QD
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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QD
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.02997219075085e-4
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 624
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 9630
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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QD
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DP
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VQSLOD
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FS
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 210
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 9540
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Latino
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allele frequency: 0.0e0
allele num: 562
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1437
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African
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allele num: 2900
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Latino
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 9
allele frequency: 9.910802775024777e-4
allele num: 9081
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African
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South Asian
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allele count: 58
allele frequency: 1.203069902509853e-2
allele num: 4821
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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bin: 4.75e1
variant carriers: 33

Other
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allele count: 25
allele frequency: 1.262626262626263e-1
allele num: 198
num of homozygotes: 1

Latino
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allele count: 44
allele frequency: 1.030444964871194e-1
allele num: 427
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European (Finnish)
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allele count: 158
allele frequency: 1.142443962400578e-1
allele num: 1383
num of homozygotes: 7

African
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allele frequency: 2.601263470828688e-2
allele num: 2691
num of homozygotes: 1

European (Non-Finnish)
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allele count: 1855
allele frequency: 2.084503876840094e-1
allele num: 8899
num of homozygotes: 125

South Asian
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allele frequency: 1.111574556830031e-1
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East Asian
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allele frequency: 1.579778830963665e-3
allele num: 633
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 194
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.199184554502938e-4
allele num: 8339
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Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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FS
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 194
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South Asian
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allele frequency: 2.092050209205021e-4
allele num: 4780
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 396
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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FS
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 7733
num of homozygotes: 0

European (Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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DP
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FS
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Other
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FS
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QD
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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South Asian
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allele frequency: 2.099076406381192e-4
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQ
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FS
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DP
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.118195297606439e-4
allele num: 4721
num of homozygotes: 0

FS
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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QD
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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African
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allele frequency: 1.509813789632612e-3
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European (Non-Finnish)
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allele frequency: 1.625487646293888e-4
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East Asian
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FS
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 4.363001745200698e-3
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Latino
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South Asian
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European (Finnish)
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allele num: 766
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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GenotypeQuality
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variant carriers: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.966955153422502e-4
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Other
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DP
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

East Asian
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South Asian
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allele frequency: 2.152389151958674e-4
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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FS
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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European (Non-Finnish)
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.081598667776853e-4
allele num: 4804
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Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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VQSLOD
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.089864158829676e-4
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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FS
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QD
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.728982061811109e-3
allele num: 4627
num of homozygotes: 0

East Asian
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South Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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QD
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MQ
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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bin: 2.25e1
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Latino
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South Asian
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Other
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European (Finnish)
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 639
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 1.098177026136613e-3
allele num: 4553
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 303
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 101
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.063e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.9048e5

QD
type: SiteQuality
SIO_000300: 2.666e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 101
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4557
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.842524161455372e-4
allele num: 3518
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 2.058e0

DP
type: SiteQuality
SIO_000300: 1.89474e5

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.81e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 1981
bin: 2.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4555
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 101
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.842524161455372e-4
allele num: 3518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.89529e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

QD
type: SiteQuality
SIO_000300: 5.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 5.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.308e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.43e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 95
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 253
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 139
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3231
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.452359750667854e-4
allele num: 4492
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: -4.198e-1

QD
type: SiteQuality
SIO_000300: 3.034e1

DP
type: SiteQuality
SIO_000300: 1.78077e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.27e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.65e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.253090435914119e-4
allele num: 3074
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 229
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 4459
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.186e0

QD
type: SiteQuality
SIO_000300: 1.287e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.72885e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.532e0

FS
type: SiteQuality
SIO_000300: 2.463e0

VQSLOD
type: SiteQuality
SIO_000300: -1.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 6.5359477124183e-4
allele num: 3060
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 5.458e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.78e1

DP
type: SiteQuality
SIO_000300: 1.72857e5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.269042170644001e-4
allele num: 3059
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 441
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4459
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.311e0

QD
type: SiteQuality
SIO_000300: 2.183e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.72841e5

FS
type: SiteQuality
SIO_000300: 2.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 4.889975550122249e-3
allele num: 409
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 215
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 125
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4431
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.101e0

DP
type: SiteQuality
SIO_000300: 1.70454e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2969
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4387
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.005025125628141e-2
allele num: 398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 205
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.584e0

VQSLOD
type: SiteQuality
SIO_000300: -3.871e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.67134e5

QD
type: SiteQuality
SIO_000300: 1.821e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.369272237196766e-4
allele num: 2968
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 393
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4383
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 9.709e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

VQSLOD
type: SiteQuality
SIO_000300: -1.161e0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

DP
type: SiteQuality
SIO_000300: 1.67009e5

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

South Asian
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allele frequency: 2.319109461966605e-4
allele num: 4312
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.843e1

QD
type: SiteQuality
SIO_000300: 2.757e1

DP
type: SiteQuality
SIO_000300: 1.60714e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.02e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.685e-1

GenotypeQuality
all individuals: 245
bin: 6.75e1
variant carriers: 54

European (Non-Finnish)
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allele count: 639
allele frequency: 2.41679273827534e-1
allele num: 2644
num of homozygotes: 47

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 8
allele frequency: 2.409638554216868e-2
allele num: 332
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.818181818181818e-1
allele num: 22
num of homozygotes: 0

South Asian
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allele count: 499
allele frequency: 1.26746253492507e-1
allele num: 3937
num of homozygotes: 12

Latino
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allele count: 14
allele frequency: 1.555555555555556e-1
allele num: 90
num of homozygotes: 2

Other
type: Population
allele count: 13
allele frequency: 1.645569620253164e-1
allele num: 79
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.40179e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.759e-1

QD
type: SiteQuality
SIO_000300: 2.09e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele frequency: 3.048780487804878e-3
allele num: 328
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 16
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DP
type: SiteQuality
SIO_000300: 1.20658e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 6.58e0

ReadPosRankSum
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.86697247706422e-4
allele num: 3488
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 1.07425e5

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 1.948e1

GenotypeQuality
all individuals: 540
bin: 3.25e1
variant carriers: 0

African
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allele count: 2
allele frequency: 6.389776357827476e-3
allele num: 313
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.901915264074289e-4
allele num: 3446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.543389368468878e-4
allele num: 2201
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.06531e5

FS
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.096000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.900232018561485e-4
allele num: 3448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.0664e5

FS
type: SiteQuality
SIO_000300: 4.192e0

QD
type: SiteQuality
SIO_000300: 2.528e1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
all individuals: 42
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.03951367781155e-4
allele num: 3290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2145
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 75
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.825e1

VQSLOD
type: SiteQuality
SIO_000300: -1.658e0

FS
type: SiteQuality
SIO_000300: 1.536e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

DP
type: SiteQuality
SIO_000300: 1.02304e5

GenotypeQuality
all individuals: 16
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 79
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 9.615384615384616e-3
allele num: 312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2095
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.234152652005175e-4
allele num: 3092
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.538461538461539e-2
allele num: 65
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.956e0

QD
type: SiteQuality
SIO_000300: 2.244e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.412e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

DP
type: SiteQuality
SIO_000300: 9.8805e4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 141
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3063
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.541984732824427e-4
allele num: 2096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 79
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.947e0

QD
type: SiteQuality
SIO_000300: 2.022e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 9.8923e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 860
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 75
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.116207951070336e-3
allele num: 327
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 139
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 9.8983e4

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.181e1

GenotypeQuality
all individuals: 583
bin: 9.75e1
variant carriers: 567

Latino
type: Population
allele count: 18
allele frequency: 1.935483870967742e-1
allele num: 93
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 626
allele frequency: 2.577192260189378e-1
allele num: 2429
num of homozygotes: 48

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

South Asian
type: Population
allele count: 417
allele frequency: 1.429061000685401e-1
allele num: 2918
num of homozygotes: 12

African
type: Population
allele count: 16
allele frequency: 4.177545691906005e-2
allele num: 383
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.40625e-1
allele num: 64
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.875e-1
allele num: 16
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 1.06306e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.613e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 2.014e1

GenotypeQuality
all individuals: 41
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2429
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.84931506849315e-3
allele num: 146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 383
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 93
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.613e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 2.014e1

DP
type: SiteQuality
SIO_000300: 1.06306e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeQuality
all individuals: 3246
bin: 2.25e1
variant carriers: 51

South Asian
type: Population
allele count: 291
allele frequency: 9.831081081081081e-2
allele num: 2960
num of homozygotes: 5

East Asian
type: Population
allele count: 11
allele frequency: 6.918238993710692e-2
allele num: 159
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.492537313432836e-2
allele num: 67
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.666666666666667e-1
allele num: 18
num of homozygotes: 0