X-114881873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881873
    reference: chr 0
allele count: 1
allele frequency: 1.145213009619789e-5
allele num: 87320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1476T>C
  hgvsp: ENST00000537301.1:c.1476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1515T>C
  hgvsp: ENST00000355899.3:c.1515T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1768T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1515T>C
  hgvsp: ENST00000420625.2:c.1515T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1407T>C
  hgvsp: ENST00000289290.3:c.1407T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1380T>C
  hgvsp: ENST00000539310.1:c.1380T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.297T>C
  hgvsp: ENST00000543070.1:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr505Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

X-114881874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881874
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881874
    reference: chr 0
allele count: 1
allele frequency: 1.1449638763897e-5
allele num: 87339
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1381A>G
  hgvsp: ENSP00000445339.1:p.Thr461Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.298A>G
  hgvsp: ENSP00000439260.1:p.Thr100Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1408A>G
  hgvsp: ENSP00000289290.3:p.Thr470Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1477A>G
  hgvsp: ENSP00000445105.1:p.Thr493Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1516A>G
  hgvsp: ENSP00000398945.2:p.Thr506Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1516A>G
  hgvsp: ENSP00000348163.3:p.Thr506Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1769A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr506Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-114881876-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881876
    reference: chr 0
allele count: 7
allele frequency: 8.011995101237281e-5
allele num: 87369
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1383C>A
  hgvsp: ENST00000539310.1:c.1383C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.300C>A
  hgvsp: ENST00000543070.1:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1771C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1518C>A
  hgvsp: ENST00000355899.3:c.1518C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1410C>A
  hgvsp: ENST00000289290.3:c.1410C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1518C>A
  hgvsp: ENST00000420625.2:c.1518C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1479C>A
  hgvsp: ENST00000537301.1:c.1479C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26995
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Thr506Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

X-114881903-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881903
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881903
    reference: chr 0
allele count: 3
allele frequency: 3.421727972626176e-5
allele num: 87675
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1798T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.327T>C
  hgvsp: ENST00000543070.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1437T>C
  hgvsp: ENST00000289290.3:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1410T>C
  hgvsp: ENST00000539310.1:c.1410T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1506T>C
  hgvsp: ENST00000537301.1:c.1506T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1545T>C
  hgvsp: ENST00000420625.2:c.1545T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1545T>C
  hgvsp: ENST00000355899.3:c.1545T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26982
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp515Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-114881917-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881917
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881917
    reference: chr 0
allele count: 2
allele frequency: 2.280501710376283e-5
allele num: 87700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.341A>G
  hgvsp: ENSP00000439260.1:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1520A>G
  hgvsp: ENSP00000445105.1:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1559A>G
  hgvsp: ENSP00000398945.2:p.Asn520Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1559A>G
  hgvsp: ENSP00000348163.3:p.Asn520Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1451A>G
  hgvsp: ENSP00000289290.3:p.Asn484Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1424A>G
  hgvsp: ENSP00000445339.1:p.Asn475Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1812A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26983
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn520Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-114881921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881921
    reference: chr 0
allele count: 6
allele frequency: 6.841739170097038e-5
allele num: 87697
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1816C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1563C>T
  hgvsp: ENST00000355899.3:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1455C>T
  hgvsp: ENST00000289290.3:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1563C>T
  hgvsp: ENST00000420625.2:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.345C>T
  hgvsp: ENST00000543070.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1428C>T
  hgvsp: ENST00000539310.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1524C>T
  hgvsp: ENST00000537301.1:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp521Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-114881950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881950
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881950
    reference: chr 0
allele count: 1
allele frequency: 1.140445914352512e-5
allele num: 87685
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1592C>T
  hgvsp: ENSP00000398945.2:p.Thr531Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1553C>T
  hgvsp: ENSP00000445105.1:p.Thr518Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1457C>T
  hgvsp: ENSP00000445339.1:p.Thr486Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1592C>T
  hgvsp: ENSP00000348163.3:p.Thr531Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.374C>T
  hgvsp: ENSP00000439260.1:p.Thr125Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1845C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1484C>T
  hgvsp: ENSP00000289290.3:p.Thr495Met
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr531Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-114881951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881951
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881951
    reference: chr 0
allele count: 3
allele frequency: 3.421727972626176e-5
allele num: 87675
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1593G>A
  hgvsp: ENST00000355899.3:c.1593G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.375G>A
  hgvsp: ENST00000543070.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1485G>A
  hgvsp: ENST00000289290.3:c.1485G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1593G>A
  hgvsp: ENST00000420625.2:c.1593G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1846G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1458G>A
  hgvsp: ENST00000539310.1:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1554G>A
  hgvsp: ENST00000537301.1:c.1554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr531Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

X-114881954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881954
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881954
    reference: chr 0
allele count: 2
allele frequency: 2.281360146919593e-5
allele num: 87667
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1488G>A
  hgvsp: ENST00000289290.3:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1557G>A
  hgvsp: ENST00000537301.1:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1596G>A
  hgvsp: ENST00000355899.3:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1461G>A
  hgvsp: ENST00000539310.1:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1596G>A
  hgvsp: ENST00000420625.2:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.378G>A
  hgvsp: ENST00000543070.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1849G>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu532Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-114881956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881956
    reference: chr 0
allele count: 2
allele frequency: 2.281386170237036e-5
allele num: 87666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1559G>A
  hgvsp: ENSP00000445105.1:p.Ser520Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1598G>A
  hgvsp: ENSP00000348163.3:p.Ser533Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.380G>A
  hgvsp: ENSP00000439260.1:p.Ser127Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1598G>A
  hgvsp: ENSP00000398945.2:p.Ser533Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1463G>A
  hgvsp: ENSP00000445339.1:p.Ser488Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1490G>A
  hgvsp: ENSP00000289290.3:p.Ser497Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1851G>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26975
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ser533Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-114881961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881961
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881961
    reference: chr 0
allele count: 1
allele frequency: 1.140966398539563e-5
allele num: 87645
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.385G>A
  hgvsp: ENSP00000439260.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1495G>A
  hgvsp: ENSP00000289290.3:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1468G>A
  hgvsp: ENSP00000445339.1:p.Ala490Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1856G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1603G>A
  hgvsp: ENSP00000398945.2:p.Ala535Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1603G>A
  hgvsp: ENSP00000348163.3:p.Ala535Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1564G>A
  hgvsp: ENSP00000445105.1:p.Ala522Thr
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala535Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

X-114881973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881973
    reference: chr 0
allele count: 1
allele frequency: 1.142726545537653e-5
allele num: 87510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1868A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1576A>G
  hgvsp: ENSP00000445105.1:p.Thr526Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1615A>G
  hgvsp: ENSP00000348163.3:p.Thr539Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1615A>G
  hgvsp: ENSP00000398945.2:p.Thr539Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.397A>G
  hgvsp: ENSP00000439260.1:p.Thr133Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1507A>G
  hgvsp: ENSP00000289290.3:p.Thr503Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1480A>G
  hgvsp: ENSP00000445339.1:p.Thr494Ala
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr539Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-114881974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881974
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881974
    reference: chr 0
allele count: 1
allele frequency: 1.142831021005234e-5
allele num: 87502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1508C>T
  hgvsp: ENSP00000289290.3:p.Thr503Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1869C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1577C>T
  hgvsp: ENSP00000445105.1:p.Thr526Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1616C>T
  hgvsp: ENSP00000398945.2:p.Thr539Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1481C>T
  hgvsp: ENSP00000445339.1:p.Thr494Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1616C>T
  hgvsp: ENSP00000348163.3:p.Thr539Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.398C>T
  hgvsp: ENSP00000439260.1:p.Thr133Ile
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr539Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-114881979-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881979
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881979
    reference: chr 0
allele count: 1
allele frequency: 1.143772160585611e-5
allele num: 87430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1621A>G
  hgvsp: ENSP00000348163.3:p.Ile541Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1486A>G
  hgvsp: ENSP00000445339.1:p.Ile496Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.403A>G
  hgvsp: ENSP00000439260.1:p.Ile135Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1513A>G
  hgvsp: ENSP00000289290.3:p.Ile505Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1874A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1621A>G
  hgvsp: ENSP00000398945.2:p.Ile541Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1582A>G
  hgvsp: ENSP00000445105.1:p.Ile528Val
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile541Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ

X-114881986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881986
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881986
    reference: chr 0
allele count: 1
allele frequency: 1.146079262841818e-5
allele num: 87254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1881G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1520G>A
  hgvsp: ENSP00000289290.3:p.Ser507Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1493G>A
  hgvsp: ENSP00000445339.1:p.Ser498Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.410G>A
  hgvsp: ENSP00000439260.1:p.Ser137Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1628G>A
  hgvsp: ENSP00000398945.2:p.Ser543Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1589G>A
  hgvsp: ENSP00000445105.1:p.Ser530Asn
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1628G>A
  hgvsp: ENSP00000348163.3:p.Ser543Asn
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser543Asn
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-114881987-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881987
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881987
    reference: chr 0
allele count: 1
allele frequency: 1.146473447674952e-5
allele num: 87224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1494T>C
  hgvsp: ENST00000539310.1:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1521T>C
  hgvsp: ENST00000289290.3:c.1521T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1629T>C
  hgvsp: ENST00000355899.3:c.1629T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1882T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.411T>C
  hgvsp: ENST00000543070.1:c.411T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1629T>C
  hgvsp: ENST00000420625.2:c.1629T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1590T>C
  hgvsp: ENST00000537301.1:c.1590T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser543Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

X-114881987-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114881987
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114881987
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1494T>G
  hgvsp: ENSP00000445339.1:p.Ser498Arg
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1629T>G
  hgvsp: ENSP00000398945.2:p.Ser543Arg
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1629T>G
  hgvsp: ENSP00000348163.3:p.Ser543Arg
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1590T>G
  hgvsp: ENSP00000445105.1:p.Ser530Arg
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1521T>G
  hgvsp: ENSP00000289290.3:p.Ser507Arg
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.411T>G
  hgvsp: ENSP00000439260.1:p.Ser137Arg
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1882T>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26965
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser543Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

X-114882004-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882004
    reference: chr 0
allele count: 2
allele frequency: 2.307710059308149e-5
allele num: 86666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1500+11A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.417+11A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1888+11A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1635+11A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1527+11A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1635+11A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1596+11A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

X-114882026-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882026
    reference: chr 0
allele count: 1
allele frequency: 1.160577503365675e-5
allele num: 86164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.417+33G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1635+33G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1888+33G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1635+33G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1527+33G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1596+33G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1500+33G>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9371
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genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
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genotype depth: GenotypeDepth
  all individuals: 2883
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 509
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9851
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-114882033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882033
    reference: chr 0
allele count: 1
allele frequency: 1.16448326055313e-5
allele num: 85875
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1635+40G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1888+40G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1500+40G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1527+40G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1635+40G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.417+40G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1596+40G>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2906
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
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genotype depth: GenotypeDepth
  all individuals: 210
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3329
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genotype quality: GenotypeQuality
  all individuals: 2041
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genotype quality: GenotypeQuality
  all individuals: 738
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2283
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

X-114882037-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882037
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882037
    reference: chr 0
allele count: 1
allele frequency: 1.166262362381041e-5
allele num: 85744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1888+44A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1500+44A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1635+44A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1596+44A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.417+44A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1635+44A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1527+44A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1386
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 513
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genotype quality: GenotypeQuality
  all individuals: 1207
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

X-114882042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882042
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882042
    reference: chr 0
allele count: 1
allele frequency: 1.16864752422022e-5
allele num: 85569
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1888+49C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1635+49C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1635+49C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1527+49C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1500+49C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.417+49C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1596+49C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 550
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-114882185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882185
    reference: chr 0
allele count: 4
allele frequency: 4.645113340765515e-5
allele num: 86112
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1636-28T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1889-28T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.418-28T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1501-28T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1528-28T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1636-28T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1597-28T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7425
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-114882206-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882206
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882206
    reference: chr 0
allele count: 2
allele frequency: 2.300966405890474e-5
allele num: 86920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.418-7A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1636-7A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1636-7A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1889-7A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1501-7A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1528-7A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1597-7A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7433
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34222
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1636-7A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

X-114882220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882220
    reference: chr 0
allele count: 2
allele frequency: 2.289744235568887e-5
allele num: 87346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1643C>T
  hgvsp: ENSP00000398945.2:p.Thr548Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1508C>T
  hgvsp: ENSP00000445339.1:p.Thr503Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.425C>T
  hgvsp: ENSP00000439260.1:p.Thr142Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1896C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1535C>T
  hgvsp: ENSP00000289290.3:p.Thr512Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1643C>T
  hgvsp: ENSP00000348163.3:p.Thr548Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1604C>T
  hgvsp: ENSP00000445105.1:p.Thr535Met
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr548Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-114882221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882221
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882221
    reference: chr 0
allele count: 1
allele frequency: 1.143929167905923e-5
allele num: 87418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1509G>A
  hgvsp: ENST00000539310.1:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1644G>A
  hgvsp: ENST00000420625.2:c.1644G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1644G>A
  hgvsp: ENST00000355899.3:c.1644G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.426G>A
  hgvsp: ENST00000543070.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1605G>A
  hgvsp: ENST00000537301.1:c.1605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1536G>A
  hgvsp: ENST00000289290.3:c.1536G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1897G>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr548Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

X-114882222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882222
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882222
    reference: chr 0
allele count: 1
allele frequency: 1.143654433376411e-5
allele num: 87439
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1645A>G
  hgvsp: ENSP00000398945.2:p.Ile549Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1898A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1537A>G
  hgvsp: ENSP00000289290.3:p.Ile513Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1606A>G
  hgvsp: ENSP00000445105.1:p.Ile536Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1510A>G
  hgvsp: ENSP00000445339.1:p.Ile504Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.427A>G
  hgvsp: ENSP00000439260.1:p.Ile143Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1645A>G
  hgvsp: ENSP00000348163.3:p.Ile549Val
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7439
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile549Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum

X-114882234-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882234
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882234
    reference: chr 0
allele count: 1
allele frequency: 1.141252867397829e-5
allele num: 87623
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1618T>C
  hgvsp: ENST00000537301.1:c.1618T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.439T>C
  hgvsp: ENST00000543070.1:c.439T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1549T>C
  hgvsp: ENST00000289290.3:c.1549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1657T>C
  hgvsp: ENST00000355899.3:c.1657T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1522T>C
  hgvsp: ENST00000539310.1:c.1522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1657T>C
  hgvsp: ENST00000420625.2:c.1657T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1910T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu553Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

X-114882259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882259
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882259
    reference: chr 0
allele count: 1
allele frequency: 1.140081857877396e-5
allele num: 87713
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1643C>T
  hgvsp: ENSP00000445105.1:p.Ala548Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.464C>T
  hgvsp: ENSP00000439260.1:p.Ala155Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1682C>T
  hgvsp: ENSP00000348163.3:p.Ala561Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1682C>T
  hgvsp: ENSP00000398945.2:p.Ala561Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1574C>T
  hgvsp: ENSP00000289290.3:p.Ala525Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1547C>T
  hgvsp: ENSP00000445339.1:p.Ala516Val
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1935C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala561Val
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-114882260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882260
    reference: chr 0
allele count: 1
allele frequency: 1.140003876013178e-5
allele num: 87719
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1683C>T
  hgvsp: ENST00000420625.2:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1683C>T
  hgvsp: ENST00000355899.3:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1644C>T
  hgvsp: ENST00000537301.1:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1575C>T
  hgvsp: ENST00000289290.3:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1548C>T
  hgvsp: ENST00000539310.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.465C>T
  hgvsp: ENST00000543070.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1936C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala561Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

X-114882304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882304
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882304
    reference: chr 0
allele count: 3
allele frequency: 3.420440552743193e-5
allele num: 87708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1980A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1619A>G
  hgvsp: ENSP00000289290.3:p.Asn540Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1592A>G
  hgvsp: ENSP00000445339.1:p.Asn531Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1727A>G
  hgvsp: ENSP00000348163.3:p.Asn576Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.509A>G
  hgvsp: ENSP00000439260.1:p.Asn170Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1727A>G
  hgvsp: ENSP00000398945.2:p.Asn576Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1688A>G
  hgvsp: ENSP00000445105.1:p.Asn563Ser
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7427
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35374
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn576Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-114882309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882309
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882309
    reference: chr 0
allele count: 4
allele frequency: 4.561939736776077e-5
allele num: 87682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1732A>G
  hgvsp: ENSP00000348163.3:p.Thr578Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1732A>G
  hgvsp: ENSP00000398945.2:p.Thr578Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1693A>G
  hgvsp: ENSP00000445105.1:p.Thr565Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1985A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1597A>G
  hgvsp: ENSP00000445339.1:p.Thr533Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1624A>G
  hgvsp: ENSP00000289290.3:p.Thr542Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.514A>G
  hgvsp: ENSP00000439260.1:p.Thr172Ala
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr578Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS

X-114882316-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882316
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882316
    reference: chr 0
allele count: 2
allele frequency: 2.281282080529257e-5
allele num: 87670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1739A>C
  hgvsp: ENSP00000348163.3:p.Asp580Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1604A>C
  hgvsp: ENSP00000445339.1:p.Asp535Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1700A>C
  hgvsp: ENSP00000445105.1:p.Asp567Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1992A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1739A>C
  hgvsp: ENSP00000398945.2:p.Asp580Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.521A>C
  hgvsp: ENSP00000439260.1:p.Asp174Ala
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1631A>C
  hgvsp: ENSP00000289290.3:p.Asp544Ala
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7418
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp580Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

X-114882317-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882317
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882317
    reference: chr 0
allele count: 1
allele frequency: 1.140758147865071e-5
allele num: 87661
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1632T>C
  hgvsp: ENST00000289290.3:c.1632T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1701T>C
  hgvsp: ENST00000537301.1:c.1701T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1740T>C
  hgvsp: ENST00000420625.2:c.1740T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1605T>C
  hgvsp: ENST00000539310.1:c.1605T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.522T>C
  hgvsp: ENST00000543070.1:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1740T>C
  hgvsp: ENST00000355899.3:c.1740T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*1993T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp580Asp
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-114882328-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882328
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882328
    reference: chr 0
allele count: 1
allele frequency: 1.142609033467019e-5
allele num: 87519
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1643A>G
  hgvsp: ENSP00000289290.3:p.Asn548Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2004A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1712A>G
  hgvsp: ENSP00000445105.1:p.Asn571Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1616A>G
  hgvsp: ENSP00000445339.1:p.Asn539Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.533A>G
  hgvsp: ENSP00000439260.1:p.Asn178Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1751A>G
  hgvsp: ENSP00000398945.2:p.Asn584Ser
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1751A>G
  hgvsp: ENSP00000348163.3:p.Asn584Ser
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7414
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn584Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-114882345-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882345
    reference: chr 0
allele count: 2
allele frequency: 2.303563612909171e-5
allele num: 86822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+8A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+8A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+8A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+8A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+8A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+8A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+8A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22735
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7403
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1760+8A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

X-114882349-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882349
    reference: chr 0
allele count: 1
allele frequency: 1.154841093865484e-5
allele num: 86592
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+12T>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+12T>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+12T>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+12T>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+12T>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+12T>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+12T>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7396
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

X-114882355-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882355
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882355
    reference: chr 0
allele count: 41
allele frequency: 4.753623188405797e-4
allele num: 86250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+18T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+18T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+18T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+18T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+18T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+18T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+18T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6794
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

X-114882357-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882357
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882357
    reference: chr 0
allele count: 1
allele frequency: 1.161413207590997e-5
allele num: 86102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+20G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+20G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+20G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+20G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+20G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+20G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+20G>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 317
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genotype depth: GenotypeDepth
  all individuals: 12332
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genotype depth: GenotypeDepth
  all individuals: 20025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7367
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-114882360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882360
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882360
    reference: chr 0
allele count: 1
allele frequency: 1.16459175236121e-5
allele num: 85867
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+23T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+23T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+23T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+23T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+23T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+23T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+23T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 485
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-114882371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882371
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882371
    reference: chr 0
allele count: 2
allele frequency: 2.352553697038135e-5
allele num: 85014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+34C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+34C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+34C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+34C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+34C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+34C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+34C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
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genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7390
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-114882373-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882373
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882373
    reference: chr 0
allele count: 2
allele frequency: 2.361052084808991e-5
allele num: 84708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+36G>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+36G>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+36G>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+36G>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+36G>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+36G>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+36G>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-114882388-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114882388
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114882388
    reference: chr 0
allele count: 66
allele frequency: 7.994670219853431e-4
allele num: 82555
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1652+51A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1721+51A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1625+51A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.542+51A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1760+51A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2013+51A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1760+51A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
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  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11060
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 317
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genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 794
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genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 1
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

X-114883708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883708
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83124
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-41T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-114883713-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883713
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883713
    reference: chr 0
allele count: 15
allele frequency: 1.80182344532667e-4
allele num: 83249
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-36A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-36A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-36A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-36A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-36A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-36A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-36A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 612
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12019
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-114883733-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883733
    reference: chr 0
allele count: 3
allele frequency: 3.568794461230996e-5
allele num: 84062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-16T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-16T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-16T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-16T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-16T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-16T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-16T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-114883736-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883736
    reference: chr 0
allele count: 1
allele frequency: 1.18791651322745e-5
allele num: 84181
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-13C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-13C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-13C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-13C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-13C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-13C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-13C>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 452
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-114883738-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883738
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883738
    reference: chr 0
allele count: 1
allele frequency: 1.184651653181382e-5
allele num: 84413
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-11C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-11C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-11C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-11C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-11C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-11C>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-11C>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-114883738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883738
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883738
    reference: chr 0
allele count: 1
allele frequency: 1.184651653181382e-5
allele num: 84413
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-11C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-11C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-11C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
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  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-11C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-11C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-11C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-11C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-114883739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883739
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883739
    reference: chr 0
allele count: 2
allele frequency: 2.366415826589048e-5
allele num: 84516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-10C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-10C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-10C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-10C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-10C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-10C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-10C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4913
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-114883746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883746
    reference: chr 0
allele count: 1
allele frequency: 1.177149180115596e-5
allele num: 84951
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1722-3T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2014-3T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1761-3T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.543-3T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1653-3T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1761-3T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1626-3T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1761-3T>C
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-114883769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883769
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883769
    reference: chr 0
allele count: 4
allele frequency: 4.633115190826432e-5
allele num: 86335
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2034G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1781G>A
  hgvsp: ENSP00000348163.3:p.Arg594Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1781G>A
  hgvsp: ENSP00000398945.2:p.Arg594Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.563G>A
  hgvsp: ENSP00000439260.1:p.Arg188Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1673G>A
  hgvsp: ENSP00000289290.3:p.Arg558Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1646G>A
  hgvsp: ENSP00000445339.1:p.Arg549Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1742G>A
  hgvsp: ENSP00000445105.1:p.Arg581Lys
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17115
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg594Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

X-114883771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883771
    reference: chr 0
allele count: 1
allele frequency: 1.155868924463966e-5
allele num: 86515
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1675A>G
  hgvsp: ENSP00000289290.3:p.Arg559Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1648A>G
  hgvsp: ENSP00000445339.1:p.Arg550Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1783A>G
  hgvsp: ENSP00000398945.2:p.Arg595Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2036A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.565A>G
  hgvsp: ENSP00000439260.1:p.Arg189Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1783A>G
  hgvsp: ENSP00000348163.3:p.Arg595Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1744A>G
  hgvsp: ENSP00000445105.1:p.Arg582Gly
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23090
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg595Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-114883772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883772
    reference: chr 0
allele count: 1
allele frequency: 1.155441551989093e-5
allele num: 86547
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1676G>A
  hgvsp: ENSP00000289290.3:p.Arg559Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1784G>A
  hgvsp: ENSP00000398945.2:p.Arg595Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.566G>A
  hgvsp: ENSP00000439260.1:p.Arg189Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2037G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1784G>A
  hgvsp: ENSP00000348163.3:p.Arg595Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1745G>A
  hgvsp: ENSP00000445105.1:p.Arg582Lys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1649G>A
  hgvsp: ENSP00000445339.1:p.Arg550Lys
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg595Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-114883776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883776
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883776
    reference: chr 0
allele count: 1
allele frequency: 1.153801776854736e-5
allele num: 86670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2041C>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1749C>T
  hgvsp: ENST00000537301.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1680C>T
  hgvsp: ENST00000289290.3:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1788C>T
  hgvsp: ENST00000420625.2:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1653C>T
  hgvsp: ENST00000539310.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1788C>T
  hgvsp: ENST00000355899.3:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.570C>T
  hgvsp: ENST00000543070.1:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23088
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile596Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

X-114883790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883790
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883790
    reference: chr 0
allele count: 2
allele frequency: 2.29221106679503e-5
allele num: 87252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1763A>G
  hgvsp: ENSP00000445105.1:p.Tyr588Cys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1694A>G
  hgvsp: ENSP00000289290.3:p.Tyr565Cys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.584A>G
  hgvsp: ENSP00000439260.1:p.Tyr195Cys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1802A>G
  hgvsp: ENSP00000398945.2:p.Tyr601Cys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2055A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1667A>G
  hgvsp: ENSP00000445339.1:p.Tyr556Cys
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1802A>G
  hgvsp: ENSP00000348163.3:p.Tyr601Cys
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23090
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr601Cys
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-114883810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883810
    reference: chr 0
allele count: 1
allele frequency: 1.142961642207288e-5
allele num: 87492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1687G>A
  hgvsp: ENSP00000445339.1:p.Val563Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1822G>A
  hgvsp: ENSP00000348163.3:p.Val608Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2075G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1714G>A
  hgvsp: ENSP00000289290.3:p.Val572Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1822G>A
  hgvsp: ENSP00000398945.2:p.Val608Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1783G>A
  hgvsp: ENSP00000445105.1:p.Val595Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.604G>A
  hgvsp: ENSP00000439260.1:p.Val202Met
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val608Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-114883830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883830
    reference: chr 0
allele count: 1
allele frequency: 1.143301397114307e-5
allele num: 87466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.624G>A
  hgvsp: ENSP00000439260.1:p.Met208Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1707G>A
  hgvsp: ENSP00000445339.1:p.Met569Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1803G>A
  hgvsp: ENSP00000445105.1:p.Met601Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1734G>A
  hgvsp: ENSP00000289290.3:p.Met578Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2095G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1842G>A
  hgvsp: ENSP00000398945.2:p.Met614Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1842G>A
  hgvsp: ENSP00000348163.3:p.Met614Ile
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met614Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

X-114883835-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883835
    reference: chr 0
allele count: 1
allele frequency: 1.143994600345486e-5
allele num: 87413
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1712T>C
  hgvsp: ENSP00000445339.1:p.Met571Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1847T>C
  hgvsp: ENSP00000398945.2:p.Met616Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2100T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1847T>C
  hgvsp: ENSP00000348163.3:p.Met616Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.629T>C
  hgvsp: ENSP00000439260.1:p.Met210Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1739T>C
  hgvsp: ENSP00000289290.3:p.Met580Thr
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1808T>C
  hgvsp: ENSP00000445105.1:p.Met603Thr
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2967
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23093
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met616Thr
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-114883838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883838
    reference: chr 0
allele count: 3
allele frequency: 3.432376463050467e-5
allele num: 87403
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1742C>T
  hgvsp: ENSP00000289290.3:p.Thr581Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1715C>T
  hgvsp: ENSP00000445339.1:p.Thr572Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1850C>T
  hgvsp: ENSP00000348163.3:p.Thr617Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1850C>T
  hgvsp: ENSP00000398945.2:p.Thr617Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.632C>T
  hgvsp: ENSP00000439260.1:p.Thr211Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1811C>T
  hgvsp: ENSP00000445105.1:p.Thr604Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2103C>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr617Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

X-114883861-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883861
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883861
    reference: chr 0
allele count: 1
allele frequency: 1.153522280282844e-5
allele num: 86691
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1873A>G
  hgvsp: ENSP00000398945.2:p.Arg625Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.655A>G
  hgvsp: ENSP00000439260.1:p.Arg219Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1738A>G
  hgvsp: ENSP00000445339.1:p.Arg580Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1873A>G
  hgvsp: ENSP00000348163.3:p.Arg625Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1765A>G
  hgvsp: ENSP00000289290.3:p.Arg589Gly
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2126A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1834A>G
  hgvsp: ENSP00000445105.1:p.Arg612Gly
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg625Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-114883869-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883869
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883869
    reference: chr 0
allele count: 1
allele frequency: 1.158023947935243e-5
allele num: 86354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1746G>T
  hgvsp: ENSP00000445339.1:p.Met582Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1881G>T
  hgvsp: ENSP00000398945.2:p.Met627Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1842G>T
  hgvsp: ENSP00000445105.1:p.Met614Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1773G>T
  hgvsp: ENSP00000289290.3:p.Met591Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.663G>T
  hgvsp: ENSP00000439260.1:p.Met221Ile
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2134G>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1881G>T
  hgvsp: ENSP00000348163.3:p.Met627Ile
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met627Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-114883876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883876
    reference: chr 0
allele count: 1
allele frequency: 1.161777519604996e-5
allele num: 86075
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1888G>A
  hgvsp: ENSP00000348163.3:p.Val630Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1849G>A
  hgvsp: ENSP00000445105.1:p.Val617Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1888G>A
  hgvsp: ENSP00000398945.2:p.Val630Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1780G>A
  hgvsp: ENSP00000289290.3:p.Val594Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2141G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.670G>A
  hgvsp: ENSP00000439260.1:p.Val224Met
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1753G>A
  hgvsp: ENSP00000445339.1:p.Val585Met
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23093
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val630Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

X-114883880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883880
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883880
    reference: chr 0
allele count: 5
allele frequency: 5.823433496389471e-5
allele num: 85860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.674A>G
  hgvsp: ENST00000543070.1:c.674A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.1757A>G
  hgvsp: ENST00000539310.1:c.1757A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.1853A>G
  hgvsp: ENST00000537301.1:c.1853A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2145A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.1892A>G
  hgvsp: ENST00000420625.2:c.1892A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.1784A>G
  hgvsp: ENST00000289290.3:c.1784A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.1892A>G
  hgvsp: ENST00000355899.3:c.1892A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ter631Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-114883888-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883888
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883888
    reference: chr 0
allele count: 1
allele frequency: 1.169522250160809e-5
allele num: 85505
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*7C>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*7C>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2153C>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*7C>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*7C>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*7C>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*7C>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
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genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 30
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genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23092
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-114883891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883891
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883891
    reference: chr 0
allele count: 2
allele frequency: 2.340166619863334e-5
allele num: 85464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*10T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*10T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*10T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*10T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*10T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2156T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*10T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 410
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
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genotype quality: GenotypeQuality
  all individuals: 1647
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genotype quality: GenotypeQuality
  all individuals: 14980
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genotype quality: GenotypeQuality
  all individuals: 97
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-114883899-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883899
    reference: chr 0
allele count: 1
allele frequency: 1.175723657911445e-5
allele num: 85054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*18A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*18A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*18A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*18A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2164A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*18A>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*18A>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9564
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genotype depth: GenotypeDepth
  all individuals: 1895
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
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genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14525
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 578
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 59
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genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-114883908-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883908
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883908
    reference: chr 0
allele count: 1
allele frequency: 1.183039939428355e-5
allele num: 84528
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*27T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*27T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2173T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*27T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-114883919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883919
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 84042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*38G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*38G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2184G>A
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*38G>A
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13199
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23088
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

X-114883921-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883921
    reference: chr 0
allele count: 5
allele frequency: 5.947849257708412e-5
allele num: 84064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*40A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2186A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*40A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*40A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-114883922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883922
    reference: chr 0
allele count: 1
allele frequency: 1.190150315984909e-5
allele num: 84023
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2187T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*41T>C
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*41T>C
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

X-114883924-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883924
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24114883924
    reference: chr 0
allele count: 1
allele frequency: 1.191270370723339e-5
allele num: 83944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000348163
  ensembl transcript: ENST00000355899
  gene symbol: PLS3
  hgvsc: ENST00000355899.3:c.*43A>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445339
  ensembl transcript: ENST00000539310
  gene symbol: PLS3
  hgvsc: ENST00000539310.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000398945
  ensembl transcript: ENST00000420625
  gene symbol: PLS3
  hgvsc: ENST00000420625.2:c.*43A>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000289290
  ensembl transcript: ENST00000289290
  gene symbol: PLS3
  hgvsc: ENST00000289290.3:c.*43A>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000439260
  ensembl transcript: ENST00000543070
  gene symbol: PLS3
  hgvsc: ENST00000543070.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000419051
  ensembl transcript: ENST00000481823
  gene symbol: PLS3
  hgvsc: ENST00000481823.1:c.*2189A>T
  variant of: http://identifiers.org/hgnc/9091
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102024
  ensembl protein: ENSP00000445105
  ensembl transcript: ENST00000537301
  gene symbol: PLS3
  hgvsc: ENST00000537301.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/9091
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-114883925-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24114883925
    reference: chr 0
allele count: 2
allele frequency: 2.383818639077939e-5
allele num: 83899
alternate allele: C
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26997
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088467482561296e-5
allele num: 47882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 2.739477e6

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26997
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073076510355188e-4
allele num: 9319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.740134e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.457e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.68e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 8.222718195700693e-4
allele num: 8513
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.573e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.422e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

DP
type: SiteQuality
SIO_000300: 2.742405e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.255473539346929e-5
allele num: 47958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10091
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.59e-2

MQ
type: SiteQuality
SIO_000300: 5.996e1

QD
type: SiteQuality
SIO_000300: 1.442e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.751246e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507613447911955e-4
allele num: 6633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47967
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07284626113078e-4
allele num: 9321
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.312e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

FS
type: SiteQuality
SIO_000300: 1.729e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.751917e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e0

GenotypeQuality
all individuals: 2303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26983
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.20799293442261e-4
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.254560617116648e-5
allele num: 47965
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.14569252226156e-4
allele num: 9321
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.752347e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.399e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4905
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08494047494944e-5
allele num: 47963
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10095
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.005e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 3.287e1

DP
type: SiteQuality
SIO_000300: 2.751614e6

GenotypeQuality
all individuals: 26976
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10091
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47961
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.52319436288902e-4
allele num: 8515
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.751507e6

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.86e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 2173
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.348796241926013e-4
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.21e-2

FS
type: SiteQuality
SIO_000300: 1.177e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
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SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: -4.296e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 2.751249e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.169967891247237e-5
allele num: 47962
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.776e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

QD
type: SiteQuality
SIO_000300: 1.037e1

FS
type: SiteQuality
SIO_000300: 1.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.608e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.750952e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085114368523113e-5
allele num: 47959
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.293e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

FS
type: SiteQuality
SIO_000300: 1.068e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 2.750197e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9969
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08672426025625e-5
allele num: 47922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.397e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.44e-2

DP
type: SiteQuality
SIO_000300: 2.745554e6

GenotypeQuality
all individuals: 447
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9961
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08672426025625e-5
allele num: 47922
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.745609e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.2e1

VQSLOD
type: SiteQuality
SIO_000300: 9.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.03e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47907
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.009489198465576e-4
allele num: 9906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508978421608571e-4
allele num: 6627
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47861
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
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allele num: 8509
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South Asian
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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num of homozygotes: 0

Other
type: Population
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allele num: 626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 5.963e1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.134927412467976e-4
allele num: 9368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

DP
type: SiteQuality
SIO_000300: 2.701428e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

QD
type: SiteQuality
SIO_000300: 1.784e1

FS
type: SiteQuality
SIO_000300: 5.34e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.061e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100222623598102e-5
allele num: 47614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9033
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 2.528e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.543e0

QD
type: SiteQuality
SIO_000300: 1.026e1

DP
type: SiteQuality
SIO_000300: 2.664812e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2756
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8443
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.208968411751712e-4
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47531
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8845
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.178e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.726e0

QD
type: SiteQuality
SIO_000300: 1.677e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 3.332e0

VQSLOD
type: SiteQuality
SIO_000300: -8.331e-1

DP
type: SiteQuality
SIO_000300: 2.651472e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.186661920018987e-4
allele num: 8427
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 2.644408e6

GenotypeQuality
all individuals: 299
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8667
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8415
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.107925801011804e-5
allele num: 47440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.075e0

DP
type: SiteQuality
SIO_000300: 2.642191e6

FS
type: SiteQuality
SIO_000300: 1.727e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.503e0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
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variant carriers: 0

GenotypeQuality
all individuals: 2938
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variant carriers: 0

GenotypeQuality
all individuals: 2077
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 944
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.29553264604811e-4
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

FS
type: SiteQuality
SIO_000300: 2.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.873e1

VQSLOD
type: SiteQuality
SIO_000300: -3.764e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

DP
type: SiteQuality
SIO_000300: 1.986082e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174674027957242e-4
allele num: 8513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091787641718613e-5
allele num: 47806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9493
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 3.552e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 2.009225e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.037697401935813e-4
allele num: 9815
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

DP
type: SiteQuality
SIO_000300: 2.022244e6

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0096e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.12e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

South Asian
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allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.087116231502932e-5
allele num: 47913
num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 630
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086854900978735e-5
allele num: 47919
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47953
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.598e0

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.029214e6

FS
type: SiteQuality
SIO_000300: 3.107e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.895111814763506e-5
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47971
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.032007e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 3.021e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.580000000000001e-2

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47975
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.262e1

DP
type: SiteQuality
SIO_000300: 2.032097e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.46e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.219229531065565e-4
allele num: 9319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.107e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
SIO_000300: 1.789e1

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.660000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.03085e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7423
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3031
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47959
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.036824630244491e-4
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10107
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.094e-1

QD
type: SiteQuality
SIO_000300: 2.173e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

DP
type: SiteQuality
SIO_000300: 2.029645e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 1.362e0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.171011470281543e-5
allele num: 47950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10105
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.556e1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.017e1

DP
type: SiteQuality
SIO_000300: 2.028364e6

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 1.994e0

GenotypeQuality
all individuals: 2333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085723224528105e-5
allele num: 47945
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 2.513e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.708e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.211e0

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

DP
type: SiteQuality
SIO_000300: 2.027962e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1392
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2972
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 948
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.923588369554431e-5
allele num: 10077
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47861
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.687e-1

QD
type: SiteQuality
SIO_000300: 1.554e1

DP
type: SiteQuality
SIO_000300: 2.020917e6

FS
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.721e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
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variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.36630383341221e-4
allele num: 8452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

QD
type: SiteQuality
SIO_000300: 3.237e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.93e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

DP
type: SiteQuality
SIO_000300: 1.977557e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.23e0

VQSLOD
type: SiteQuality
SIO_000300: -2.657e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
all individuals: 2818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 7190
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.75e1
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GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 932
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GenotypeQuality
all individuals: 32074
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: -1.769e-1

DP
type: SiteQuality
SIO_000300: 1.956987e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30418
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7398
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 1360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 29
allele frequency: 4.44853505138825e-3
allele num: 6519
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.021427127552052e-4
allele num: 9894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.110864252388358e-3
allele num: 4501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.062360565175821e-4
allele num: 47065
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.953e-1

DP
type: SiteQuality
SIO_000300: 1.920386e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.12e0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46971
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.013993104846887e-4
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.904383e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 1.911e0

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
all individuals: 920
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6375
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6475
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.086366105377512e-4
allele num: 9205
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46852
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 1.1643e1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

DP
type: SiteQuality
SIO_000300: 1.867725e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 4304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7345
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1953
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8337
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.058884084826024e-4
allele num: 9714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6379
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9153
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.063e0

VQSLOD
type: SiteQuality
SIO_000300: -1.463e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

DP
type: SiteQuality
SIO_000300: 1.736356e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.78e1

GenotypeQuality
all individuals: 3570
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7344
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 308
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16738
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8321
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9135
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.334070125254627e-5
allele num: 46146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6355
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9671
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.409e0

FS
type: SiteQuality
SIO_000300: 5.502e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.631e0

DP
type: SiteQuality
SIO_000300: 1.704199e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 2.75e1

GenotypeQuality
all individuals: 670
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 839
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5365
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7377
bin: 9.75e1
variant carriers: 54

GenotypeQuality
all individuals: 1598
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1901
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2739
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4303
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2341
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 55
allele frequency: 6.743501716527709e-3
allele num: 8156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.11333778668448e-3
allele num: 8982
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.230350611116067e-5
allele num: 44836
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.36e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.869e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.609712e6

GenotypeQuality
all individuals: 468
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46661
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.24e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

DP
type: SiteQuality
SIO_000300: 2.108253e6

FS
type: SiteQuality
SIO_000300: 2.856e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

GenotypeQuality
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23011
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 553
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.084481075805227e-4
allele num: 9221
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46705
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.950132330408135e-3
allele num: 7179
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

DP
type: SiteQuality
SIO_000300: 2.124297e6

FS
type: SiteQuality
SIO_000300: 4.619e0

VQSLOD
type: SiteQuality
SIO_000300: -6.560000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

QD
type: SiteQuality
SIO_000300: 1.716e1

GenotypeQuality
all individuals: 2922
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4825
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47020
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.542749173358526e-4
allele num: 8468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.170356e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.245e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

VQSLOD
type: SiteQuality
SIO_000300: -3.791e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 2.452e1

MQ
type: SiteQuality
SIO_000300: 5.732e1

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.829e0

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 2.17585e6

QD
type: SiteQuality
SIO_000300: 1.193e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.587e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51148730350665e-4
allele num: 6616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

DP
type: SiteQuality
SIO_000300: 2.181013e6

FS
type: SiteQuality
SIO_000300: 1.2226e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.86e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.121790791427965e-5
allele num: 47130
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8475
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.181013e6

VQSLOD
type: SiteQuality
SIO_000300: -1.196e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

FS
type: SiteQuality
SIO_000300: 1.2226e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

QD
type: SiteQuality
SIO_000300: 1.86e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.270486596366408e-4
allele num: 7871
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079097874177188e-4
allele num: 9267
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.909e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.183238e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.62e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8151
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07828337287039e-4
allele num: 9274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

DP
type: SiteQuality
SIO_000300: 2.193897e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.103e0

FS
type: SiteQuality
SIO_000300: 9.532999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

QD
type: SiteQuality
SIO_000300: 1.767e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3553
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 23040
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.301329580541494e-5
allele num: 47609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.043e1

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.898e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

FS
type: SiteQuality
SIO_000300: 7.866e1

DP
type: SiteQuality
SIO_000300: 2.227579e6

QD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47693
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.208968411751712e-4
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9231
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.225317e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.79e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.29e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175778953556731e-4
allele num: 8505
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47698
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.3684e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.52e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.096128450751462e-5
allele num: 47707
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9360
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9310
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9783
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.179903026249791e-5
allele num: 47848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.27e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.174e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.087246921310791e-5
allele num: 47910
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

FS
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SIO_000300: 0.0e0

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.550000000000001e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47900
num of homozygotes: 0

African
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allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.6e-2

BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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QD
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DP
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.088118605136772e-5
allele num: 47890
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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BaseQRankSum
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DP
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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SIO_000300: 2.7e-1

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 9891
num of homozygotes: 0

Latino
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allele frequency: 3.219575016097875e-4
allele num: 9318
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-2

QD
type: SiteQuality
SIO_000300: 1.67e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

BaseQRankSum
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SIO_000300: -3.061e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9379
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47712
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.605136436597111e-3
allele num: 623
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

FS
type: SiteQuality
SIO_000300: 1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.67e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.334e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 2.223743e6

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.098768023170399e-5
allele num: 47647
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.214962e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
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ClippingRankSum
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QD
type: SiteQuality
SIO_000300: 2.44e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.122e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.865e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.101149328682789e-5
allele num: 47593
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.207624e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47541
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 3.22407307898979e-4
allele num: 9305
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African
type: Population
allele count: 2
allele frequency: 2.35599010484156e-4
allele num: 8489
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
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VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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Other
type: Population
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allele frequency: 0.0e0
allele num: 612
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

QD
type: SiteQuality
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VQSLOD
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DP
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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allele num: 9302
num of homozygotes: 0

East Asian
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African
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allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

GenotypeQuality
all individuals: 2389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8185
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.112735570016057e-5
allele num: 47332
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

DP
type: SiteQuality
SIO_000300: 2.185567e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

QD
type: SiteQuality
SIO_000300: 3.347e1

GenotypeQuality
all individuals: 340
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.179801793298726e-4
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.657e0

VQSLOD
type: SiteQuality
SIO_000300: -2.703e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.235e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.649e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 1.5021e1

DP
type: SiteQuality
SIO_000300: 2.175872e6

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 2.166557e6

QD
type: SiteQuality
SIO_000300: 1.83e1

GenotypeQuality
all individuals: 2160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23089
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4797
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.061345786457228e-4
allele num: 47110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8465
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7461
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.697e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

FS
type: SiteQuality
SIO_000300: 1.026e0

DP
type: SiteQuality
SIO_000300: 2.166392e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 2.071e1

GenotypeQuality
all individuals: 2942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23088
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13212
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.123097174157661e-5
allele num: 47101
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7429
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.165443e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.415e1

GenotypeQuality
all individuals: 544
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23089
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124360036538993e-5
allele num: 47073
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 3.351e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.229e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

DP
type: SiteQuality
SIO_000300: 2.164057e6