19-39371788-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371788
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371788
    reference: chr 19
allele count: 1
allele frequency: 9.364172675344134e-6
allele num: 106790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.588C>A
  hgvsp: ENST00000414941.1:c.588C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2227C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.588C>A
  hgvsp: ENST00000392081.2:c.588C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.699C>A
  hgvsp: ENST00000249396.7:c.699C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1470C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.699C>A
  hgvsp: ENST00000358931.5:c.699C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*322C>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val233Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-39371790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371790
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371790
    reference: chr 19
allele count: 67
allele frequency: 6.276699392940118e-4
allele num: 106744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.697G>A
  hgvsp: ENSP00000351809.5:p.Val233Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.697G>A
  hgvsp: ENSP00000249396.7:p.Val233Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.586G>A
  hgvsp: ENSP00000375931.2:p.Val196Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.586G>A
  hgvsp: ENSP00000404309.1:p.Val196Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1468G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*320G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2225G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23295
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val233Ile
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

19-39371791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371791
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371791
    reference: chr 19
allele count: 56
allele frequency: 5.260685767966182e-4
allele num: 106450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.585C>T
  hgvsp: ENST00000414941.1:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.585C>T
  hgvsp: ENST00000392081.2:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.696C>T
  hgvsp: ENST00000358931.5:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1467C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2224C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.696C>T
  hgvsp: ENST00000249396.7:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*319C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12154
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10794
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22786
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile232Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

19-39371792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371792
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371792
    reference: chr 19
allele count: 3
allele frequency: 2.815526691193033e-5
allele num: 106552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2223T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.584T>C
  hgvsp: ENSP00000404309.1:p.Ile195Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*318T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.695T>C
  hgvsp: ENSP00000351809.5:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.584T>C
  hgvsp: ENSP00000375931.2:p.Ile195Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1466T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.695T>C
  hgvsp: ENSP00000249396.7:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile232Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-39371795-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371795
    reference: chr 19
allele count: 1
allele frequency: 9.410701850143983e-6
allele num: 106262
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692A>G
  hgvsp: ENSP00000249396.7:p.Asp231Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581A>G
  hgvsp: ENSP00000375931.2:p.Asp194Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692A>G
  hgvsp: ENSP00000351809.5:p.Asp231Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581A>G
  hgvsp: ENSP00000404309.1:p.Asp194Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2220A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp231Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-39371800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371800
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371800
    reference: chr 19
allele count: 19
allele frequency: 1.799446906845475e-4
allele num: 105588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-5C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-5C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-5C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-5C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-5C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-5C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2215C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20488
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12937
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 6.75e1
  variant carriers: 0
hgvs: c.692-5C>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-39371801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371801
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371801
    reference: chr 19
allele count: 3
allele frequency: 2.840747684790637e-5
allele num: 105606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-6C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-6C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-6C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2214C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-6C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-6C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-6C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13960
  bin: 2.25e1
  variant carriers: 0
hgvs: c.692-6C>T
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-39371810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371810
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371810
    reference: chr 19
allele count: 1
allele frequency: 9.582766352990782e-6
allele num: 104354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2205C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-15C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

19-39371810-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371810
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371810
    reference: chr 19
allele count: 1
allele frequency: 9.582766352990782e-6
allele num: 104354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2205C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-15C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-15C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-15C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-15C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-15C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-15C>G
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

19-39371812-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371812
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371812
    reference: chr 19
allele count: 1
allele frequency: 9.610394602802392e-6
allele num: 104054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2203A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-17A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-17A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-17A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-17A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-17A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-17A>C
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

19-39371816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371816
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371816
    reference: chr 19
allele count: 10
allele frequency: 9.715529302036375e-5
allele num: 102928
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-21G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-21G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-21G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2199G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-21G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-21G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-21G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17957
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

19-39371827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371827
    reference: chr 19
allele count: 1
allele frequency: 9.859016070196194e-6
allele num: 101430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-32T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-32T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-32T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-32T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-32T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2188T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-32T>C
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10659
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16431
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-39371834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371834
    reference: chr 19
allele count: 1
allele frequency: 1.009041007426542e-5
allele num: 99104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-39A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2181A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-39A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-39A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-39A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-39A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-39A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19077
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6018
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

19-39371835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371835
    reference: chr 19
allele count: 1
allele frequency: 1.012576196358776e-5
allele num: 98758
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-40C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-40C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-40C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2180C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-40C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-40C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-40C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5776
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9503
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8085
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6099
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS

19-39371838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371838
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371838
    reference: chr 19
allele count: 2
allele frequency: 2.052755824694652e-5
allele num: 97430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-43C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-43C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2177C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-43C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-43C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-43C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-43C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

19-39371840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371840
    reference: chr 19
allele count: 2
allele frequency: 2.056766762649115e-5
allele num: 97240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-45C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-45C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-45C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-45C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2175C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-45C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-45C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18618
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7640
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-39371842-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371842
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371840
    reference: chr 19
allele count: 1
allele frequency: 1.051745898190997e-5
allele num: 95080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-49_*315-48delCT
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-49_581-48delCT
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2171_2172delCT
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-49_1463-48delCT
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-49_692-48delCT
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-49_692-48delCT
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-49_581-48delCT
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: CAG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-39371846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371846
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371846
    reference: chr 19
allele count: 9
allele frequency: 9.510122997590768e-5
allele num: 94636
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2169C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-51C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10763
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-39371846-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39371846
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39371846
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 94636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.692-51C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.2169C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.581-51C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.692-51C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*315-51C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1463-51C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.581-51C>G
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10763
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5716
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-39372026-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372026
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372026
    reference: chr 19
allele count: 1
allele frequency: 8.488099684242691e-6
allele num: 117812
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+46T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+46T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+46T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+46T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+46T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1989T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+46T>G
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/19-39372026-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372026
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372025
    reference: chr 19
allele count: 1
allele frequency: 8.488099684242691e-6
allele num: 117812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1988delG
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+45delG
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+45delG
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+45delG
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+45delG
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+45delG
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+45delG
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: AC
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

19-39372039-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372039
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372039
    reference: chr 19
allele count: 1
allele frequency: 8.43355204344966e-6
allele num: 118574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+33A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1976A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+33A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+33A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+33A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+33A>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+33A>C
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

19-39372040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372040
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372040
    reference: chr 19
allele count: 2
allele frequency: 1.686511282760482e-5
allele num: 118588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1975G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+32G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+32G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+32G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+32G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+32G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+32G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

19-39372048-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372048
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372048
    reference: chr 19
allele count: 1
allele frequency: 8.389120987902887e-6
allele num: 119202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+24C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+24C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1967C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+24C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+24C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+24C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+24C>A
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

19-39372055-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372055
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372055
    reference: chr 19
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+17G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+17G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+17G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+17G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+17G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1960G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+17G>C
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41101
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-39372060-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372060
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372060
    reference: chr 19
allele count: 7
allele frequency: 5.836154141168231e-5
allele num: 119942
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+12G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+12G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1955G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+12G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+12G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+12G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+12G>T
  variant of: http://identifiers.org/hgnc/10886
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26890
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

19-39372069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372069
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372069
    reference: chr 19
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.580+3G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1946G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.691+3G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.691+3G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.580+3G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1462+3G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*314+3G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
hgvs: c.691+3G>A
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

19-39372077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372077
    reference: chr 19
allele count: 5
allele frequency: 4.152616979220305e-5
allele num: 120406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1457A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*309A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.686A>G
  hgvsp: ENSP00000351809.5:p.Lys229Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.686A>G
  hgvsp: ENSP00000249396.7:p.Lys229Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.575A>G
  hgvsp: ENSP00000375931.2:p.Lys192Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.575A>G
  hgvsp: ENSP00000404309.1:p.Lys192Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*499A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1938A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys229Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

19-39372088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372088
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372088
    reference: chr 19
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.675G>A
  hgvsp: ENST00000358931.5:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1446G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*298G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*488G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.675G>A
  hgvsp: ENST00000249396.7:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.564G>A
  hgvsp: ENST00000414941.1:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.564G>A
  hgvsp: ENST00000392081.2:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1927G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20402
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln225Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-39372093-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372093
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372093
    reference: chr 19
allele count: 2
allele frequency: 1.657550140891762e-5
allele num: 120660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.559T>G
  hgvsp: ENSP00000404309.1:p.Cys187Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1922T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.670T>G
  hgvsp: ENSP00000249396.7:p.Cys224Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.559T>G
  hgvsp: ENSP00000375931.2:p.Cys187Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1441T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.670T>G
  hgvsp: ENSP00000351809.5:p.Cys224Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*293T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*483T>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys224Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-39372104-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372104
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372104
    reference: chr 19
allele count: 14
allele frequency: 1.161112677691708e-4
allele num: 120574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.659A>G
  hgvsp: ENSP00000351809.5:p.Lys220Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.548A>G
  hgvsp: ENSP00000404309.1:p.Lys183Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.548A>G
  hgvsp: ENSP00000375931.2:p.Lys183Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*472A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*282A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.659A>G
  hgvsp: ENSP00000249396.7:p.Lys220Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1430A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1911A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20650
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys220Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

19-39372107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372107
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372107
    reference: chr 19
allele count: 3
allele frequency: 2.488800398208064e-5
allele num: 120540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.656C>T
  hgvsp: ENSP00000351809.5:p.Pro219Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*469C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*279C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1427C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1908C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.545C>T
  hgvsp: ENSP00000375931.2:p.Pro182Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.545C>T
  hgvsp: ENSP00000404309.1:p.Pro182Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.656C>T
  hgvsp: ENSP00000249396.7:p.Pro219Leu
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro219Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-39372108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372108
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372108
    reference: chr 19
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*468C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.655C>T
  hgvsp: ENSP00000249396.7:p.Pro219Ser
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1426C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.544C>T
  hgvsp: ENSP00000404309.1:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.544C>T
  hgvsp: ENSP00000375931.2:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.655C>T
  hgvsp: ENSP00000351809.5:p.Pro219Ser
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1907C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro219Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-39372109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372109
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372109
    reference: chr 19
allele count: 4
allele frequency: 3.319612269286947e-5
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.654G>A
  hgvsp: ENST00000358931.5:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1906G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*277G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*467G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.543G>A
  hgvsp: ENST00000392081.2:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.654G>A
  hgvsp: ENST00000249396.7:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1425G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.543G>A
  hgvsp: ENST00000414941.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20647
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr218Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-39372110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372110
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372110
    reference: chr 19
allele count: 7
allele frequency: 5.810768183553866e-5
allele num: 120466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.653C>T
  hgvsp: ENSP00000351809.5:p.Thr218Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.542C>T
  hgvsp: ENSP00000404309.1:p.Thr181Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1424C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1905C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.653C>T
  hgvsp: ENSP00000249396.7:p.Thr218Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*466C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*276C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.542C>T
  hgvsp: ENSP00000375931.2:p.Thr181Met
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr218Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

19-39372111-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372111
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372111
    reference: chr 19
allele count: 1
allele frequency: 8.302751531857658e-6
allele num: 120442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.652A>G
  hgvsp: ENSP00000351809.5:p.Thr218Ala
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1904A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.541A>G
  hgvsp: ENSP00000375931.2:p.Thr181Ala
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.652A>G
  hgvsp: ENSP00000249396.7:p.Thr218Ala
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1423A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.541A>G
  hgvsp: ENSP00000404309.1:p.Thr181Ala
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*275A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*465A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr218Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-39372114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372114
    reference: chr 19
allele count: 1
allele frequency: 8.307441806370146e-6
allele num: 120374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.538G>A
  hgvsp: ENSP00000404309.1:p.Val180Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1420G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.649G>A
  hgvsp: ENSP00000249396.7:p.Val217Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.538G>A
  hgvsp: ENSP00000375931.2:p.Val180Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.649G>A
  hgvsp: ENSP00000351809.5:p.Val217Met
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1901G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*462G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*272G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val217Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

19-39372123-AGATCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372123
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372118
    reference: chr 19
allele count: 1
allele frequency: 8.326671995736744e-6
allele num: 120096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.524_528delAGATC
  hgvsp: ENSP00000404309.1:p.Lys175IlefsTer3
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.635_639delAGATC
  hgvsp: ENSP00000249396.7:p.Lys212IlefsTer3
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1887_1891delAGATC
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.635_639delAGATC
  hgvsp: ENSP00000351809.5:p.Lys212IlefsTer3
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.524_528delAGATC
  hgvsp: ENSP00000375931.2:p.Lys175IlefsTer3
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*448_*452delAGATC
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*258_*262delAGATC
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1406_1410delAGATC
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6766
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys212IlefsTer3
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: AGATCT
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-39372126-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372126
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372126
    reference: chr 19
allele count: 1
allele frequency: 8.337363058811759e-6
allele num: 119942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1408A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.526A>G
  hgvsp: ENSP00000404309.1:p.Ile176Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1889A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.637A>G
  hgvsp: ENSP00000351809.5:p.Ile213Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.637A>G
  hgvsp: ENSP00000249396.7:p.Ile213Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.526A>G
  hgvsp: ENSP00000375931.2:p.Ile176Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*260A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*450A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile213Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

19-39372136-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372136
    reference: chr 19
allele count: 1
allele frequency: 8.378998877214151e-6
allele num: 119346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-5C>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-5C>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: c.632-5C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-39372138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372138
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372138
    reference: chr 19
allele count: 2
allele frequency: 1.676614579840386e-5
allele num: 119288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-7T>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-7T>C
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
hgvs: c.632-7T>C
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

19-39372146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372146
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372146
    reference: chr 19
allele count: 111
allele frequency: 9.356508252271693e-4
allele num: 118634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-15C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-15C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 19962
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21488
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 9.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37637
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-39372147-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372147
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372147
    reference: chr 19
allele count: 11
allele frequency: 9.274247942803183e-5
allele num: 118608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-16C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-16C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20038
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS

19-39372162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372162
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372162
    reference: chr 19
allele count: 1
allele frequency: 8.510348583877996e-6
allele num: 117504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-31C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-31C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-39372176-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372176
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372176
    reference: chr 19
allele count: 1
allele frequency: 8.680706262261498e-6
allele num: 115198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-45A>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-45A>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7032
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-39372181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372181
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372181
    reference: chr 19
allele count: 3
allele frequency: 2.646062658763759e-5
allele num: 113376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-50G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-50G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6529
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-39372182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39372182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39372182
    reference: chr 19
allele count: 6
allele frequency: 5.378368203087183e-5
allele num: 111558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*445-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1403-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.521-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*255-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1884-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.632-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.521-51C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.632-51C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13620
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15031
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5890
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

19-39374218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374218
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374218
    reference: chr 19
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+49G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+49G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

19-39374220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374220
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374220
    reference: chr 19
allele count: 3
allele frequency: 2.488387524883875e-5
allele num: 120560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+47G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+47G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8840
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-39374221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374221
    reference: chr 19
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+46G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+46G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36752
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-39374237-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374237
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374237
    reference: chr 19
allele count: 5
allele frequency: 4.142227524273453e-5
allele num: 120708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+30C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+30C>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

19-39374241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374241
    reference: chr 19
allele count: 29
allele frequency: 2.401775657589611e-4
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+26C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+26C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29696
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-39374247-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374247
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374247
    reference: chr 19
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+20T>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+20T>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

19-39374253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374253
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374253
    reference: chr 19
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+14G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+14G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-39374257-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374257
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374257
    reference: chr 19
allele count: 2
allele frequency: 1.652728655009421e-5
allele num: 121012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+10G>C
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+10G>C
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-39374258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374258
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374258
    reference: chr 19
allele count: 6
allele frequency: 4.957612413861484e-5
allele num: 121026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+9G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+9G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-39374262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374262
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374262
    reference: chr 19
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+5G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+5G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: c.631+5G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

19-39374266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374266
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374266
    reference: chr 19
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520+1G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254+1G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 7.75e1
  variant carriers: 0
hgvs: c.631+1G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/19-39374267-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374267
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374267
    reference: chr 19
allele count: 2
allele frequency: 1.650491846570278e-5
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*444G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.520G>T
  hgvsp: ENSP00000404309.1:p.Glu174Ter
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.520G>T
  hgvsp: ENSP00000375931.2:p.Glu174Ter
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.631G>T
  hgvsp: ENSP00000249396.7:p.Glu211Ter
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*254G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.631G>T
  hgvsp: ENSP00000351809.5:p.Glu211Ter
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1402G>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1883G>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu211Ter
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

19-39374271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374271
    reference: chr 19
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.516G>A
  hgvsp: ENSP00000375931.2:p.Met172Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.627G>A
  hgvsp: ENSP00000351809.5:p.Met209Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.627G>A
  hgvsp: ENSP00000249396.7:p.Met209Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1879G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*440G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.516G>A
  hgvsp: ENSP00000404309.1:p.Met172Ile
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1398G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met209Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

19-39374276-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374276
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374276
    reference: chr 19
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1393T>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*435T>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.511T>A
  hgvsp: ENSP00000375931.2:p.Trp171Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.511T>A
  hgvsp: ENSP00000404309.1:p.Trp171Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1874T>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.622T>A
  hgvsp: ENSP00000351809.5:p.Trp208Arg
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*245T>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.622T>A
  hgvsp: ENSP00000249396.7:p.Trp208Arg
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Trp208Arg
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

19-39374284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374284
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374284
    reference: chr 19
allele count: 2
allele frequency: 1.649212501030758e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.614C>T
  hgvsp: ENSP00000249396.7:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*237C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.503C>T
  hgvsp: ENSP00000385146.1:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.503C>T
  hgvsp: ENSP00000404309.1:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*427C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.614C>T
  hgvsp: ENSP00000351809.5:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.503C>T
  hgvsp: ENSP00000375931.2:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1385C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1866C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39683
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro205Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-39374291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374291
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374291
    reference: chr 19
allele count: 3
allele frequency: 2.473329266080762e-5
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.496G>A
  hgvsp: ENSP00000375931.2:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*420G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.496G>A
  hgvsp: ENSP00000404309.1:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1859G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.607G>A
  hgvsp: ENSP00000351809.5:p.Glu203Lys
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1378G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.496G>A
  hgvsp: ENSP00000385146.1:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.607G>A
  hgvsp: ENSP00000249396.7:p.Glu203Lys
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*230G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu203Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

19-39374292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374292
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374292
    reference: chr 19
allele count: 16
allele frequency: 1.31910894190974e-4
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*229C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*419C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1858C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.606C>T
  hgvsp: ENST00000358931.5:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.495C>T
  hgvsp: ENST00000392081.2:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.495C>T
  hgvsp: ENST00000414941.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1377C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.495C>T
  hgvsp: ENST00000407552.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.606C>T
  hgvsp: ENST00000249396.7:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His202His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

19-39374296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374296
    reference: chr 19
allele count: 5
allele frequency: 4.12173970389422e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.602G>A
  hgvsp: ENSP00000351809.5:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.491G>A
  hgvsp: ENSP00000385146.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1854G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.491G>A
  hgvsp: ENSP00000375931.2:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.491G>A
  hgvsp: ENSP00000404309.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1373G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.602G>A
  hgvsp: ENSP00000249396.7:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*225G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*415G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg201Gln
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-39374297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374297
    reference: chr 19
allele count: 3
allele frequency: 2.473003050037095e-5
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.601C>T
  hgvsp: ENSP00000351809.5:p.Arg201Trp
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.490C>T
  hgvsp: ENSP00000404309.1:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*224C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*414C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.601C>T
  hgvsp: ENSP00000249396.7:p.Arg201Trp
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.490C>T
  hgvsp: ENSP00000385146.1:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1372C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.490C>T
  hgvsp: ENSP00000375931.2:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1853C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg201Trp
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

19-39374299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374299
    reference: chr 19
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.599G>A
  hgvsp: ENSP00000351809.5:p.Cys200Tyr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.488G>A
  hgvsp: ENSP00000375931.2:p.Cys163Tyr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1851G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.488G>A
  hgvsp: ENSP00000404309.1:p.Cys163Tyr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*412G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.488G>A
  hgvsp: ENSP00000385146.1:p.Cys163Tyr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*222G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.599G>A
  hgvsp: ENSP00000249396.7:p.Cys200Tyr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1370G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys200Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-39374305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374305
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374305
    reference: chr 19
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.482C>T
  hgvsp: ENSP00000375931.2:p.Ala161Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*216C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.593C>T
  hgvsp: ENSP00000351809.5:p.Ala198Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1364C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*406C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.482C>T
  hgvsp: ENSP00000404309.1:p.Ala161Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.482C>T
  hgvsp: ENSP00000385146.1:p.Ala161Val
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1845C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.593C>T
  hgvsp: ENSP00000249396.7:p.Ala198Val
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala198Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-39374305-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374305
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374305
    reference: chr 19
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.593C>G
  hgvsp: ENSP00000249396.7:p.Ala198Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*216C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.593C>G
  hgvsp: ENSP00000351809.5:p.Ala198Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.482C>G
  hgvsp: ENSP00000385146.1:p.Ala161Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1364C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.482C>G
  hgvsp: ENSP00000404309.1:p.Ala161Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.482C>G
  hgvsp: ENSP00000375931.2:p.Ala161Gly
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*406C>G
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1845C>G
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala198Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

19-39374306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374306
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374306
    reference: chr 19
allele count: 152
allele frequency: 1.25294689813212e-3
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.592G>A
  hgvsp: ENSP00000351809.5:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.481G>A
  hgvsp: ENSP00000404309.1:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.481G>A
  hgvsp: ENSP00000375931.2:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*215G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.592G>A
  hgvsp: ENSP00000249396.7:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1844G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.481G>A
  hgvsp: ENSP00000385146.1:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*405G>A
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1363G>A
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 30594
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala198Thr
num of homozygotes: 2
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-39374307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39374307
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39374307
    reference: chr 19
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000404309
  ensembl transcript: ENST00000414941
  gene symbol: SIRT2
  hgvsc: ENST00000414941.1:c.480C>T
  hgvsp: ENST00000414941.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000385146
  ensembl transcript: ENST00000407552
  gene symbol: SIRT2
  hgvsc: ENST00000407552.1:c.480C>T
  hgvsp: ENST00000407552.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000400338
  ensembl transcript: ENST00000420440
  gene symbol: SIRT2
  hgvsc: ENST00000420440.1:c.*214C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000351809
  ensembl transcript: ENST00000358931
  gene symbol: SIRT2
  hgvsc: ENST00000358931.5:c.591C>T
  hgvsp: ENST00000358931.5:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000462654
  gene symbol: SIRT2
  hgvsc: ENST00000462654.1:n.1362C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068903
  ensembl transcript: ENST00000479290
  gene symbol: SIRT2
  hgvsc: ENST00000479290.1:n.1843C>T
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000375931
  ensembl transcript: ENST00000392081
  gene symbol: SIRT2
  hgvsc: ENST00000392081.2:c.480C>T
  hgvsp: ENST00000392081.2:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000249396
  ensembl transcript: ENST00000249396
  gene symbol: SIRT2
  hgvsc: ENST00000249396.7:c.591C>T
  hgvsp: ENST00000249396.7:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10886
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000068903
  ensembl protein: ENSP00000411393
  ensembl transcript: ENST00000443898
  gene symbol: SIRT2
  hgvsc: ENST00000443898.1:c.*404C>T
  variant of: http://identifiers.org/hgnc/10886
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser197Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.658374792703151e-5
allele num: 60300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.444e0

FS
type: SiteQuality
SIO_000300: 3.067e0

MQ
type: SiteQuality
SIO_000300: 5.794e1

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

DP
type: SiteQuality
SIO_000300: 1.271179e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
SIO_000300: 8.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.710100231303007e-4
allele num: 5188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.30890052356021e-3
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.428571428571429e-3
allele num: 7700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 8.459956207285516e-4
allele num: 60284
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.147e0

QD
type: SiteQuality
SIO_000300: 1.036e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 1.271941e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 52

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.285635129519324e-3
allele num: 14438
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.269592476489029e-4
allele num: 9570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.827301756253326e-4
allele num: 60128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.262248e6

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

FS
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5176
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.441945846718678e-4
allele num: 8716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14436
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.866e0

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.260912e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

QD
type: SiteQuality
SIO_000300: 9.98e0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 417
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.953135864274787e-5
allele num: 14382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60042
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

FS
type: SiteQuality
SIO_000300: 8.695e0

MQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

MQ
type: SiteQuality
SIO_000300: 5.761e1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.251921e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 757
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3638
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14264
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.071823204419889e-3
allele num: 8688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.322751322751323e-3
allele num: 756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.254e0

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.22748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.319261213720317e-3
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.315097317201473e-4
allele num: 7604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.674144512154289e-5
allele num: 59732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.231e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 1.227048e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.691246110133947e-5
allele num: 59128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.864e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

FS
type: SiteQuality
SIO_000300: 7.373e0

DP
type: SiteQuality
SIO_000300: 1.170979e6

QD
type: SiteQuality
SIO_000300: 1.008e1

VQSLOD
type: SiteQuality
SIO_000300: -6.957e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.691246110133947e-5
allele num: 59128
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.219e0

MQ
type: SiteQuality
SIO_000300: 5.864e1

DP
type: SiteQuality
SIO_000300: 1.170979e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.008e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.338688085676038e-4
allele num: 7470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.157118e6

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 884
bin: 4.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 1591
bin: 9.75e1
variant carriers: 8

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58434
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.099868015838099e-3
allele num: 9092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

FS
type: SiteQuality
SIO_000300: 7.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

DP
type: SiteQuality
SIO_000300: 1.127015e6

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.730702665282105e-5
allele num: 57780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 1.069674e6

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.633587786259542e-5
allele num: 13100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 3.354e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.037036e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.641754546843955e-5
allele num: 13086
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.411e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 1.033709e6

FS
type: SiteQuality
SIO_000300: 1.669e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1586
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variant carriers: 2

GenotypeQuality
all individuals: 7110
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.582688449412439e-5
allele num: 55824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.020448e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.796041524480046e-5
allele num: 55678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.231527093596059e-4
allele num: 8120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.538e0

VQSLOD
type: SiteQuality
SIO_000300: -1.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 6.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.019577e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.831568921938533e-5
allele num: 54598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.3915e1

QD
type: SiteQuality
SIO_000300: 1.732e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 4
allele frequency: 3.171079752655779e-4
allele num: 12614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 9.210817183700538e-5
allele num: 54284
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.012015e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6754
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
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MQ
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FS
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.012015e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6380
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64820
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.463187e6

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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SIO_000300: 5.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

QD
type: SiteQuality
SIO_000300: 1.33e1

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 1.463187e6

GenotypeQuality
all individuals: 1313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 700
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GenotypeQuality
all individuals: 6426
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181233774261343e-5
allele num: 16178
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.533499e6

GenotypeQuality
all individuals: 532
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 717
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variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.001200720432259e-4
allele num: 9994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

QD
type: SiteQuality
SIO_000300: 1.007e1

DP
type: SiteQuality
SIO_000300: 1.538311e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.735e0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

FS
type: SiteQuality
SIO_000300: 2.995e0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1418
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GenotypeQuality
all individuals: 6611
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.156877231867996e-5
allele num: 16242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.151e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.568377e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.134e0

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 1.584487e6

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

FS
type: SiteQuality
SIO_000300: 4.559e0

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 959
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 529
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.28921568627451e-4
allele num: 16320
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.496e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.593691e6

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 530
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66122
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.324e1

DP
type: SiteQuality
SIO_000300: 1.603094e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.789717461787865e-4
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 9.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

DP
type: SiteQuality
SIO_000300: 1.608666e6

GenotypeQuality
all individuals: 6862
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.614209e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.852e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1319
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GenotypeQuality
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GenotypeQuality
all individuals: 2726
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GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.945903872348706e-4
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.475e0

DP
type: SiteQuality
SIO_000300: 1.615389e6

MQ
type: SiteQuality
SIO_000300: 5.82e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

FS
type: SiteQuality
SIO_000300: 2.099e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e0

QD
type: SiteQuality
SIO_000300: 1.098e1

GenotypeQuality
all individuals: 43037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.109895409470416e-4
allele num: 66354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.268e1

DP
type: SiteQuality
SIO_000300: 1.615453e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.52134072823728e-5
allele num: 66352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.466e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.128e0

DP
type: SiteQuality
SIO_000300: 1.614849e6

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 9.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 531
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 2077
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1884
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variant carriers: 0

GenotypeQuality
all individuals: 42984
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.185e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.486e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.443e0

DP
type: SiteQuality
SIO_000300: 1.614101e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.827e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

QD
type: SiteQuality
SIO_000300: 8.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 771
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 531
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 1879
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GenotypeQuality
all individuals: 2723
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variant carriers: 4

GenotypeQuality
all individuals: 6804
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variant carriers: 0

GenotypeQuality
all individuals: 2073
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GenotypeQuality
all individuals: 42902
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variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.952743604764694e-4
allele num: 10242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

DP
type: SiteQuality
SIO_000300: 1.614159e6

MQ
type: SiteQuality
SIO_000300: 5.921e1

FS
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 8.74e0

GenotypeQuality
all individuals: 6794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 530
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 2067
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 1880
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variant carriers: 0

GenotypeQuality
all individuals: 42855
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variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01659125188537e-5
allele num: 66300
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.481894150417827e-4
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.613854e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 715
bin: 9.25e1
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GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

QD
type: SiteQuality
SIO_000300: 1.292e1

FS
type: SiteQuality
SIO_000300: 1.167e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 1.612722e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 8.351000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.103e0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.655e0

DP
type: SiteQuality
SIO_000300: 1.61158e6

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42271
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.127450980392157e-5
allele num: 16320
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.605143e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -4.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.8405825624877e-5
allele num: 10162
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.345e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.60118e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.394e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.156119182467373e-5
allele num: 16244
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.449e1

VQSLOD
type: SiteQuality
SIO_000300: -5.46e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.642e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.917e0

DP
type: SiteQuality
SIO_000300: 1.584559e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.984126984126984e-4
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65646
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.581762e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.108e1

FS
type: SiteQuality
SIO_000300: 3.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.998401278976818e-4
allele num: 10008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.289139633286319e-4
allele num: 11344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.556662515566625e-4
allele num: 6424
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 100
allele frequency: 1.531112199902009e-3
allele num: 65312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.189650903689032e-5
allele num: 16156
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.239e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.555921e6

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6310
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.1e-3
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

DP
type: SiteQuality
SIO_000300: 1.554666e6

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.493e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545165178157545e-5
allele num: 64718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.442845e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.388e0

QD
type: SiteQuality
SIO_000300: 1.394e1

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 3.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.221597849987784e-4
allele num: 8186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 1.931e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 8.44e0

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 1.322901e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.794783275795934e-5
allele num: 62568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.307004e6

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 2.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5260
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.255914912090297e-4
allele num: 9214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.43040362127499e-5
allele num: 10604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.492663290481755e-5
allele num: 15402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623376623376623e-5
allele num: 61600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 1.303805e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.484e1

GenotypeQuality
all individuals: 36365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 385
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

African
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.518616700807326e-5
allele num: 66392
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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FS
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DP
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MQRankSum
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MQ
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
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ClippingRankSum
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SIO_000300: -2.97e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.01050666827227e-5
allele num: 66434
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.14e-1

FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.104e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.214201860269107e-4
allele num: 66442
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.705205e6

MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.033e1

ReadPosRankSum
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SIO_000300: -4.8e-2

FS
type: SiteQuality
SIO_000300: 1.788e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.115e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
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African
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 8.579000000000001e0

MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
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allele num: 66550
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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Other
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66554
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East Asian
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South Asian
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allele frequency: 3.058478101296795e-4
allele num: 16348
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Latino
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African
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Other
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.315e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
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SIO_000300: 1.719666e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.11e-1

QD
type: SiteQuality
SIO_000300: 1.174e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

MQRankSum
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SIO_000300: 1.15e0

BaseQRankSum
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SIO_000300: -2.135e0

VQSLOD
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SIO_000300: -2.105e0

FS
type: SiteQuality
SIO_000300: 1.5295e1

QD
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SIO_000300: 1.33e1

ClippingRankSum
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SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.721514e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.217433649866082e-4
allele num: 16428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.721862e6

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.24e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.722679e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.682e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.707e0

QD
type: SiteQuality
SIO_000300: 7.43e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.03e0

DP
type: SiteQuality
SIO_000300: 1.723241e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.095e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 4.183e0

DP
type: SiteQuality
SIO_000300: 1.724429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.72493e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 16

South Asian
type: Population
allele count: 16
allele frequency: 9.695794449157678e-4
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
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allele count: 0
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.724921e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.66e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 1.724364e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
SIO_000300: 1.906e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

GenotypeQuality
all individuals: 39756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 4.637e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

DP
type: SiteQuality
SIO_000300: 1.724007e6

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 2.765e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

DP
type: SiteQuality
SIO_000300: 1.723752e6

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39774
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 3.697e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 1.723455e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

GenotypeQuality
all individuals: 9196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.723455e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

FS
type: SiteQuality
SIO_000300: 3.697e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

QD
type: SiteQuality
SIO_000300: 1.192e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 9190
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 9.75e1
variant carriers: 150

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 139
allele frequency: 1.336281484329937e-2
allele num: 10402
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049884512703603e-4
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320027648176948e-4
allele num: 11574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

DP
type: SiteQuality
SIO_000300: 1.724709e6

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: 6.94e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0