19-11548677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548677
    reference: chr 19
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-20C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-20C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

19-11548678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548678
    reference: chr 19
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-19C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

19-11548679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548679
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548679
    reference: chr 19
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-18C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-11548682-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548682
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548679
    reference: chr 19
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-10_422-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-10_389-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-10_197-8delTTC
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-10_355-8delTTC
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: CCTT
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-11548689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548689
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548689
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-8C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.197-8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-11548690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548690
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548690
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-7C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.197-7C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

19-11548694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548694
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548694
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.389-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.355-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.422-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.197-3C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.197-3C>T
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-11548700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548700
    reference: chr 19
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.200C>T
  hgvsp: ENSP00000467566.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.200C>T
  hgvsp: ENSP00000252455.2:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.200C>T
  hgvsp: ENSP00000466012.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.200C>T
  hgvsp: ENSP00000466134.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.392C>T
  hgvsp: ENSP00000465889.1:p.Thr131Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.200C>T
  hgvsp: ENSP00000465047.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.200C>T
  hgvsp: ENSP00000465489.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.200C>T
  hgvsp: ENSP00000465821.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.358C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.425C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.200C>T
  hgvsp: ENSP00000395616.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.200C>T
  hgvsp: ENSP00000465461.1:p.Thr67Met
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr67Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

19-11548703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548703
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548703
    reference: chr 19
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.395C>T
  hgvsp: ENSP00000465889.1:p.Ala132Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.203C>T
  hgvsp: ENSP00000465489.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.203C>T
  hgvsp: ENSP00000467566.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.203C>T
  hgvsp: ENSP00000465821.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.203C>T
  hgvsp: ENSP00000465047.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.203C>T
  hgvsp: ENSP00000466012.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.203C>T
  hgvsp: ENSP00000395616.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.203C>T
  hgvsp: ENSP00000466134.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.428C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.203C>T
  hgvsp: ENSP00000465461.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.361C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.203C>T
  hgvsp: ENSP00000252455.2:p.Ala68Val
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala68Val
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

19-11548705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548705
    reference: chr 19
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.205G>A
  hgvsp: ENSP00000466134.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.205G>A
  hgvsp: ENSP00000465821.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.205G>A
  hgvsp: ENSP00000465047.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465889
  ensembl transcript: ENST00000588269
  gene symbol: PRKCSH
  hgvsc: ENST00000588269.1:c.397G>A
  hgvsp: ENST00000588269.1:c.397G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.205G>A
  hgvsp: ENSP00000465489.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.205G>A
  hgvsp: ENSP00000467566.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.205G>A
  hgvsp: ENSP00000466012.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.205G>A
  hgvsp: ENSP00000465461.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.205G>A
  hgvsp: ENSP00000395616.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.430G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.205G>A
  hgvsp: ENSP00000252455.2:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.363G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala69Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

19-11548715-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548715
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548715
    reference: chr 19
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.215A>G
  hgvsp: ENSP00000252455.2:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.215A>G
  hgvsp: ENSP00000465461.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.215A>G
  hgvsp: ENSP00000465489.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.215A>G
  hgvsp: ENSP00000465047.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.215A>G
  hgvsp: ENSP00000465821.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.215A>G
  hgvsp: ENSP00000466012.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.373A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.215A>G
  hgvsp: ENSP00000395616.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.215A>G
  hgvsp: ENSP00000466134.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.440A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.215A>G
  hgvsp: ENSP00000467566.1:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn72Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

19-11548719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548719
    reference: chr 19
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.219C>T
  hgvsp: ENST00000592741.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.377C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.444C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.219C>T
  hgvsp: ENST00000252455.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.219C>T
  hgvsp: ENST00000589126.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.219C>T
  hgvsp: ENST00000587509.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.219C>T
  hgvsp: ENST00000591462.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.219C>T
  hgvsp: ENST00000589838.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.219C>T
  hgvsp: ENST00000593101.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.219C>T
  hgvsp: ENST00000412601.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.219C>T
  hgvsp: ENST00000587327.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Gly73Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

19-11548722-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548722
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548722
    reference: chr 19
allele count: 18
allele frequency: 1.494569729981069e-4
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.222C>G
  hgvsp: ENSP00000252455.2:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.222C>G
  hgvsp: ENSP00000465047.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.222C>G
  hgvsp: ENSP00000465461.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.222C>G
  hgvsp: ENSP00000466012.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.222C>G
  hgvsp: ENSP00000466134.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.222C>G
  hgvsp: ENSP00000465821.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.222C>G
  hgvsp: ENSP00000465489.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.222C>G
  hgvsp: ENSP00000467566.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.447C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.222C>G
  hgvsp: ENSP00000395616.1:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.380C>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser74Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

19-11548731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548731
    reference: chr 19
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.231C>T
  hgvsp: ENST00000589838.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.231C>T
  hgvsp: ENST00000591462.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.231C>T
  hgvsp: ENST00000589126.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.231C>T
  hgvsp: ENST00000252455.2:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.231C>T
  hgvsp: ENST00000593101.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.389C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.456C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.231C>T
  hgvsp: ENST00000587327.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.231C>T
  hgvsp: ENST00000412601.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.231C>T
  hgvsp: ENST00000587509.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.231C>T
  hgvsp: ENST00000592741.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys77Cys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

19-11548734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548734
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.234C>G
  hgvsp: ENST00000593101.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.234C>G
  hgvsp: ENST00000412601.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.234C>G
  hgvsp: ENST00000587327.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.234C>G
  hgvsp: ENST00000252455.2:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.459C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.234C>G
  hgvsp: ENST00000587509.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.234C>G
  hgvsp: ENST00000589838.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.234C>G
  hgvsp: ENST00000589126.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.234C>G
  hgvsp: ENST00000591462.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.234C>G
  hgvsp: ENST00000592741.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.392C>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr78Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

19-11548744-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548744
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548744
    reference: chr 19
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.244T>C
  hgvsp: ENSP00000395616.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.244T>C
  hgvsp: ENSP00000465461.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.244T>C
  hgvsp: ENSP00000252455.2:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.244T>C
  hgvsp: ENSP00000465489.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.244T>C
  hgvsp: ENSP00000465047.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.244T>C
  hgvsp: ENSP00000465821.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.244T>C
  hgvsp: ENSP00000467566.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.469T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.244T>C
  hgvsp: ENSP00000466012.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.244T>C
  hgvsp: ENSP00000466134.1:p.Tyr82His
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.402T>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr82His
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

19-11548751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548751
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548751
    reference: chr 19
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.251C>T
  hgvsp: ENSP00000465047.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.251C>T
  hgvsp: ENSP00000465821.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.476C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.251C>T
  hgvsp: ENSP00000466012.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.251C>T
  hgvsp: ENSP00000465489.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.251C>T
  hgvsp: ENSP00000395616.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.251C>T
  hgvsp: ENSP00000467566.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.251C>T
  hgvsp: ENSP00000466134.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.251C>T
  hgvsp: ENSP00000465461.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.409C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.251C>T
  hgvsp: ENSP00000252455.2:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro84Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11548752-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548752
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548752
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.252C>G
  hgvsp: ENST00000592741.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.252C>G
  hgvsp: ENST00000252455.2:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.252C>G
  hgvsp: ENST00000587509.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.252C>G
  hgvsp: ENST00000591462.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.252C>G
  hgvsp: ENST00000589838.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.477C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.410C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.252C>G
  hgvsp: ENST00000593101.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.252C>G
  hgvsp: ENST00000412601.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.252C>G
  hgvsp: ENST00000589126.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.252C>G
  hgvsp: ENST00000587327.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23953
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro84Pro
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

19-11548757-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548757
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548757
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.257A>G
  hgvsp: ENSP00000465821.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.257A>G
  hgvsp: ENSP00000252455.2:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.257A>G
  hgvsp: ENSP00000466012.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.415A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.257A>G
  hgvsp: ENSP00000395616.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.257A>G
  hgvsp: ENSP00000466134.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.257A>G
  hgvsp: ENSP00000465489.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.257A>G
  hgvsp: ENSP00000467566.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.257A>G
  hgvsp: ENSP00000465461.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.482A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.257A>G
  hgvsp: ENSP00000465047.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr86Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-11548762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548762
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548762
    reference: chr 19
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.262C>T
  hgvsp: ENSP00000466012.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.262C>T
  hgvsp: ENSP00000395616.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.420C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.262C>T
  hgvsp: ENSP00000252455.2:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.262C>T
  hgvsp: ENSP00000465047.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.262C>T
  hgvsp: ENSP00000465821.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.262C>T
  hgvsp: ENSP00000466134.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.262C>T
  hgvsp: ENSP00000465489.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.262C>T
  hgvsp: ENSP00000465461.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.262C>T
  hgvsp: ENSP00000467566.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.487C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro88Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-11548767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548767
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548767
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.267C>T
  hgvsp: ENST00000589838.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.267C>T
  hgvsp: ENST00000592741.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.267C>T
  hgvsp: ENST00000593101.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.267C>T
  hgvsp: ENST00000587509.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.267C>T
  hgvsp: ENST00000412601.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.267C>T
  hgvsp: ENST00000591462.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.267C>T
  hgvsp: ENST00000589126.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.425C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.492C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.267C>T
  hgvsp: ENST00000587327.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.267C>T
  hgvsp: ENST00000252455.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser89Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-11548771-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548771
    reference: chr 19
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.271C>A
  hgvsp: ENST00000587327.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.271C>A
  hgvsp: ENST00000592741.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.271C>A
  hgvsp: ENST00000589838.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.271C>A
  hgvsp: ENST00000412601.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.271C>A
  hgvsp: ENST00000591462.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.271C>A
  hgvsp: ENST00000587509.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.271C>A
  hgvsp: ENST00000593101.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.271C>A
  hgvsp: ENST00000252455.2:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.496C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.429C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.271C>A
  hgvsp: ENST00000589126.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg91Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-11548771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548771
    reference: chr 19
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.271C>T
  hgvsp: ENSP00000395616.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.271C>T
  hgvsp: ENSP00000465489.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.271C>T
  hgvsp: ENSP00000466134.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.271C>T
  hgvsp: ENSP00000465821.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.429C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.271C>T
  hgvsp: ENSP00000465461.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.271C>T
  hgvsp: ENSP00000467566.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.271C>T
  hgvsp: ENSP00000466012.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.271C>T
  hgvsp: ENSP00000252455.2:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.496C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.271C>T
  hgvsp: ENSP00000465047.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg91Trp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

19-11548773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548773
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548773
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.273G>A
  hgvsp: ENST00000589838.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.273G>A
  hgvsp: ENST00000252455.2:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.273G>A
  hgvsp: ENST00000587509.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.273G>A
  hgvsp: ENST00000587327.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.273G>A
  hgvsp: ENST00000592741.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.273G>A
  hgvsp: ENST00000593101.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.273G>A
  hgvsp: ENST00000591462.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.273G>A
  hgvsp: ENST00000589126.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.273G>A
  hgvsp: ENST00000412601.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.431G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.498G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg91Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11548775-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548775
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548775
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.275T>C
  hgvsp: ENSP00000252455.2:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.275T>C
  hgvsp: ENSP00000395616.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.500T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.275T>C
  hgvsp: ENSP00000466012.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.275T>C
  hgvsp: ENSP00000465489.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.275T>C
  hgvsp: ENSP00000465461.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.275T>C
  hgvsp: ENSP00000465821.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.275T>C
  hgvsp: ENSP00000466134.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.433T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.275T>C
  hgvsp: ENSP00000467566.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.275T>C
  hgvsp: ENSP00000465047.1:p.Val92Ala
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val92Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

19-11548778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548778
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548778
    reference: chr 19
allele count: 5
allele frequency: 4.118616144975288e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.278A>G
  hgvsp: ENSP00000465461.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.278A>G
  hgvsp: ENSP00000465047.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.278A>G
  hgvsp: ENSP00000252455.2:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.503A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.278A>G
  hgvsp: ENSP00000395616.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.278A>G
  hgvsp: ENSP00000465821.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.278A>G
  hgvsp: ENSP00000466012.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.278A>G
  hgvsp: ENSP00000465489.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.436A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.278A>G
  hgvsp: ENSP00000467566.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.278A>G
  hgvsp: ENSP00000466134.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn93Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-11548779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548779
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548779
    reference: chr 19
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.504C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.279C>T
  hgvsp: ENST00000587327.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.279C>T
  hgvsp: ENST00000587509.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.279C>T
  hgvsp: ENST00000591462.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.279C>T
  hgvsp: ENST00000592741.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.279C>T
  hgvsp: ENST00000589126.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.279C>T
  hgvsp: ENST00000412601.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.279C>T
  hgvsp: ENST00000589838.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.437C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.279C>T
  hgvsp: ENST00000593101.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.279C>T
  hgvsp: ENST00000252455.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn93Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

19-11548785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548785
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548785
    reference: chr 19
allele count: 3
allele frequency: 2.47137325974133e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.285T>C
  hgvsp: ENST00000593101.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.443T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.510T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.285T>C
  hgvsp: ENST00000412601.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.285T>C
  hgvsp: ENST00000591462.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.285T>C
  hgvsp: ENST00000589126.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.285T>C
  hgvsp: ENST00000592741.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.285T>C
  hgvsp: ENST00000587509.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.285T>C
  hgvsp: ENST00000587327.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.285T>C
  hgvsp: ENST00000589838.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.285T>C
  hgvsp: ENST00000252455.2:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly95Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

19-11548788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548788
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548788
    reference: chr 19
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.288T>C
  hgvsp: ENST00000587509.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.288T>C
  hgvsp: ENST00000592741.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.288T>C
  hgvsp: ENST00000589838.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.288T>C
  hgvsp: ENST00000593101.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.288T>C
  hgvsp: ENST00000587327.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.288T>C
  hgvsp: ENST00000412601.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.288T>C
  hgvsp: ENST00000589126.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.513T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.288T>C
  hgvsp: ENST00000252455.2:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.288T>C
  hgvsp: ENST00000591462.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.446T>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val96Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

19-11548793-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548793
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548793
    reference: chr 19
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+1G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+1G>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: c.292+1G>T
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-11548804-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548804
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548804
    reference: chr 19
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+12T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+12T>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-11548805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548805
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548805
    reference: chr 19
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+13G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

19-11548818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548818
    reference: chr 19
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+26G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum

19-11548819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548819
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548819
    reference: chr 19
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+27G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

19-11548829-A-AGAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548833
    reference: chr 19
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: AGAGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.451-46_451-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.518-46_518-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.293-46_293-43dupGAGG
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-11548829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548829
    reference: chr 19
allele count: 2
allele frequency: 1.654889370645572e-5
allele num: 120854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+37A>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-11548829-AGAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548825
    reference: chr 19
allele count: 13
allele frequency: 1.075678090919622e-4
allele num: 120854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.451-46_451-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.518-46_518-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.293-46_293-43delGAGG
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23154
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: AGAGG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-11548829-AGAGGGAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548821
    reference: chr 19
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: AGAGGGAGG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

19-11548830-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548830
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548830
    reference: chr 19
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+38G>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-11548832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548832
    reference: chr 19
allele count: 9
allele frequency: 7.451441439949661e-5
allele num: 120782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+40G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+40G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23306
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-11548836-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548836
    reference: chr 19
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+44G>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-11548838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548838
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548838
    reference: chr 19
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.450+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.517+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.292+46G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-11548849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548849
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548849
    reference: chr 19
allele count: 3
allele frequency: 2.483361478096752e-5
allele num: 120804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.518-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.451-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.293-39C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27137
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

19-11548862-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548862
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548862
    reference: chr 19
allele count: 14
allele frequency: 1.159862142099682e-4
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.518-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.451-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.293-26G>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13169
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-11548869-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548869
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548869
    reference: chr 19
allele count: 2
allele frequency: 1.656973372437905e-5
allele num: 120702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.451-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.518-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.293-19G>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS

19-11548878-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548878
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548878
    reference: chr 19
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.451-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.518-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.293-10T>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-11548895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548895
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548895
    reference: chr 19
allele count: 3
allele frequency: 2.489006886252385e-5
allele num: 120530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.300C>T
  hgvsp: ENST00000593101.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.300C>T
  hgvsp: ENST00000592741.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.300C>T
  hgvsp: ENST00000587509.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.300C>T
  hgvsp: ENST00000412601.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.458C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.300C>T
  hgvsp: ENST00000587327.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.300C>T
  hgvsp: ENST00000252455.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.300C>T
  hgvsp: ENST00000591462.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.300C>T
  hgvsp: ENST00000589838.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.300C>T
  hgvsp: ENST00000589126.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.525C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15552
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys100Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

19-11548907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548907
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548907
    reference: chr 19
allele count: 7
allele frequency: 5.812408662149595e-5
allele num: 120432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.312C>T
  hgvsp: ENST00000587509.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.312C>T
  hgvsp: ENST00000593101.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.537C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.312C>T
  hgvsp: ENST00000252455.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.312C>T
  hgvsp: ENST00000592741.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.470C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.312C>T
  hgvsp: ENST00000412601.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.312C>T
  hgvsp: ENST00000589838.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.312C>T
  hgvsp: ENST00000591462.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.312C>T
  hgvsp: ENST00000589126.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.312C>T
  hgvsp: ENST00000587327.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21116
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15837
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp104Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

19-11548908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548908
    reference: chr 19
allele count: 1
allele frequency: 8.30675172780436e-6
allele num: 120384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.313G>A
  hgvsp: ENSP00000466134.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.313G>A
  hgvsp: ENSP00000465489.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.313G>A
  hgvsp: ENSP00000395616.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.313G>A
  hgvsp: ENSP00000465047.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.471G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.313G>A
  hgvsp: ENSP00000465821.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.313G>A
  hgvsp: ENSP00000252455.2:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.538G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.313G>A
  hgvsp: ENSP00000465461.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.313G>A
  hgvsp: ENSP00000466012.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.313G>A
  hgvsp: ENSP00000467566.1:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21036
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu105Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

19-11548912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548912
    reference: chr 19
allele count: 1
allele frequency: 8.306337735692333e-6
allele num: 120390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.317A>G
  hgvsp: ENSP00000465047.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.317A>G
  hgvsp: ENSP00000252455.2:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.317A>G
  hgvsp: ENSP00000465489.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.542A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.317A>G
  hgvsp: ENSP00000465821.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.317A>G
  hgvsp: ENSP00000467566.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.317A>G
  hgvsp: ENSP00000465461.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.317A>G
  hgvsp: ENSP00000466012.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.317A>G
  hgvsp: ENSP00000466134.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.475A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.317A>G
  hgvsp: ENSP00000395616.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr106Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-11548919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548919
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548919
    reference: chr 19
allele count: 12
allele frequency: 9.986351985619653e-5
allele num: 120164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.324C>T
  hgvsp: ENST00000412601.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.324C>T
  hgvsp: ENST00000587327.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.482C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.324C>T
  hgvsp: ENST00000589838.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.324C>T
  hgvsp: ENST00000591462.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.324C>T
  hgvsp: ENST00000592741.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.324C>T
  hgvsp: ENST00000587509.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.324C>T
  hgvsp: ENST00000593101.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.324C>T
  hgvsp: ENST00000589126.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.549C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.324C>T
  hgvsp: ENST00000252455.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20547
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15901
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser108Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

19-11548922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548922
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548922
    reference: chr 19
allele count: 3
allele frequency: 2.497419333355533e-5
allele num: 120124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.485C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.327C>T
  hgvsp: ENST00000593101.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.327C>T
  hgvsp: ENST00000589838.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.327C>T
  hgvsp: ENST00000252455.2:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.327C>T
  hgvsp: ENST00000587509.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.552C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.327C>T
  hgvsp: ENST00000592741.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.327C>T
  hgvsp: ENST00000587327.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.327C>T
  hgvsp: ENST00000412601.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.327C>T
  hgvsp: ENST00000589126.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.327C>T
  hgvsp: ENST00000591462.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly109Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-11548940-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548940
    reference: chr 19
allele count: 1
allele frequency: 8.354079296920687e-6
allele num: 119702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.570C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.345C>A
  hgvsp: ENST00000412601.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.345C>A
  hgvsp: ENST00000589126.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.345C>A
  hgvsp: ENST00000592741.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.345C>A
  hgvsp: ENST00000252455.2:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.345C>A
  hgvsp: ENST00000591462.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.345C>A
  hgvsp: ENST00000593101.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.345C>A
  hgvsp: ENST00000587509.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.345C>A
  hgvsp: ENST00000589838.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.345C>A
  hgvsp: ENST00000587327.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.503C>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr115Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-11548940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548940
    reference: chr 19
allele count: 2
allele frequency: 1.670815859384137e-5
allele num: 119702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.345C>T
  hgvsp: ENST00000412601.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.345C>T
  hgvsp: ENST00000252455.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.345C>T
  hgvsp: ENST00000591462.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.345C>T
  hgvsp: ENST00000593101.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.503C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.345C>T
  hgvsp: ENST00000587327.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.345C>T
  hgvsp: ENST00000589838.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.345C>T
  hgvsp: ENST00000587509.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.570C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.345C>T
  hgvsp: ENST00000592741.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.345C>T
  hgvsp: ENST00000589126.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19585
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr115Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/19-11548944-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548944
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548944
    reference: chr 19
allele count: 1
allele frequency: 8.361903169161301e-6
allele num: 119590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.349A>C
  hgvsp: ENSP00000467566.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.349A>C
  hgvsp: ENSP00000465047.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.349A>C
  hgvsp: ENSP00000466134.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.349A>C
  hgvsp: ENSP00000465461.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.507A>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.349A>C
  hgvsp: ENSP00000465821.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.349A>C
  hgvsp: ENSP00000395616.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.349A>C
  hgvsp: ENSP00000252455.2:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.349A>C
  hgvsp: ENSP00000465489.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.349A>C
  hgvsp: ENSP00000466012.1:p.Lys117Gln
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.574A>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys117Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-11548949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548949
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548949
    reference: chr 19
allele count: 12
allele frequency: 1.00458761678331e-4
allele num: 119452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+4C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+4C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18723
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.350+4C>T
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-11548950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548950
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548950
    reference: chr 19
allele count: 1
allele frequency: 8.380543729677181e-6
allele num: 119324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+5G>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.350+5G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

19-11548953-G-GGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548953
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548955
    reference: chr 19
allele count: 1
allele frequency: 8.384619254439656e-6
allele num: 119266
alternate allele: GGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+10_575+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+10_508+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+10_350+11dupTG
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15413
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-11548954-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548954
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548954
    reference: chr 19
allele count: 1
allele frequency: 8.382651264942076e-6
allele num: 119294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+9G>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-11548955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548955
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548955
    reference: chr 19
allele count: 758
allele frequency: 6.355861143719604e-3
allele num: 119260
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+10T>C
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 1.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 9.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 18016
  bin: 2.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 3
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

19-11548962-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548962
    reference: chr 19
allele count: 1
allele frequency: 8.409721638213775e-6
allele num: 118910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+17A>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17239
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-11548964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548964
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548964
    reference: chr 19
allele count: 1
allele frequency: 8.405621679779436e-6
allele num: 118968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+19C>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-11548964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548964
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548964
    reference: chr 19
allele count: 1
allele frequency: 8.405621679779436e-6
allele num: 118968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+19C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-11548967-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548967
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548967
    reference: chr 19
allele count: 75
allele frequency: 6.307503406051839e-4
allele num: 118906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+22T>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16586
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13462
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24399
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-11548974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548974
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548974
    reference: chr 19
allele count: 1
allele frequency: 8.449228585430151e-6
allele num: 118354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+29A>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+29A>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-11548976-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548976
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548976
    reference: chr 19
allele count: 3
allele frequency: 2.531047516198704e-5
allele num: 118528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+31C>A
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21811
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

19-11548988-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548988
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548988
    reference: chr 19
allele count: 1
allele frequency: 8.483635067953916e-6
allele num: 117874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+43C>G
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6985
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-11548994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11548994
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11548994
    reference: chr 19
allele count: 2
allele frequency: 1.702678312986327e-5
allele num: 117462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465489
  ensembl transcript: ENST00000591462
  gene symbol: PRKCSH
  hgvsc: ENST00000591462.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593053
  gene symbol: PRKCSH
  hgvsc: ENST00000593053.1:n.575+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000467566
  ensembl transcript: ENST00000589126
  gene symbol: PRKCSH
  hgvsc: ENST00000589126.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465047
  ensembl transcript: ENST00000593101
  gene symbol: PRKCSH
  hgvsc: ENST00000593101.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465821
  ensembl transcript: ENST00000587509
  gene symbol: PRKCSH
  hgvsc: ENST00000587509.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466012
  ensembl transcript: ENST00000587327
  gene symbol: PRKCSH
  hgvsc: ENST00000587327.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000465461
  ensembl transcript: ENST00000589838
  gene symbol: PRKCSH
  hgvsc: ENST00000589838.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000252455
  ensembl transcript: ENST00000252455
  gene symbol: PRKCSH
  hgvsc: ENST00000252455.2:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000395616
  ensembl transcript: ENST00000412601
  gene symbol: PRKCSH
  hgvsc: ENST00000412601.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl transcript: ENST00000593104
  gene symbol: PRKCSH
  hgvsc: ENST00000593104.1:n.508+49C>T
  variant of: http://identifiers.org/hgnc/9411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130175
  ensembl protein: ENSP00000466134
  ensembl transcript: ENST00000592741
  gene symbol: PRKCSH
  hgvsc: ENST00000592741.1:c.350+49C>T
  variant of: http://identifiers.org/hgnc/9411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11536
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 439
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10501
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.243657e6

QD
type: SiteQuality
SIO_000300: 1.501e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 4.577e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.802e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e0

VQSLOD
type: SiteQuality
SIO_000300: -1.368e0

GenotypeDepth
all individuals: 439
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9339
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

VQSLOD
type: SiteQuality
SIO_000300: -3.057e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

FS
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 2.243846e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeDepth
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

DP
type: SiteQuality
SIO_000300: 2.243949e6

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeDepth
all individuals: 2298
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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MQ
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DP
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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FS
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.07e0

BaseQRankSum
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SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ClippingRankSum
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SIO_000300: 1.71e0

MQRankSum
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FS
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DP
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ReadPosRankSum
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QD
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BaseQRankSum
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SIO_000300: -6.316e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.958e1

VQSLOD
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SIO_000300: 6.0e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
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allele count: 7
allele frequency: 6.906077348066298e-4
allele num: 10136
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.510345869204048e-4
allele num: 66210
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.546072974644403e-4
allele num: 6468
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Other
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num of homozygotes: 0

DP
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SIO_000300: 2.250336e6

MQRankSum
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QD
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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SIO_000300: 1.01288e2

ReadPosRankSum
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SIO_000300: -1.511e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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DP
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SIO_000300: 2.242328e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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FS
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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SIO_000300: 5.953e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
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European (Finnish)
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East Asian
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 908
num of homozygotes: 0

South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 2.996883241428914e-5
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num of homozygotes: 0

African
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Latino
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allele num: 11578
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European (Finnish)
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VQSLOD
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QD
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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QD
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SIO_000300: 1.394e1

ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 0.0e0

FS
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11578
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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QD
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ClippingRankSum
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SIO_000300: 2.8e-1

BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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East Asian
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South Asian
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African
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Latino
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allele num: 11576
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Other
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MQRankSum
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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African
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allele num: 10406
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Latino
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European (Finnish)
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DP
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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MQ
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VQSLOD
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66734
num of homozygotes: 0

South Asian
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European (Finnish)
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Other
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Latino
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African
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East Asian
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QD
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VQSLOD
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MQRankSum
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Other
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Latino
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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DP
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BaseQRankSum
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FS
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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African
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East Asian
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Latino
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European (Non-Finnish)
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Other
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FS
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MQ
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DP
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

African
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Other
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Latino
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allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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DP
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SIO_000300: 2.240884e6

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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allele num: 16510
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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South Asian
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allele count: 0
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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VQSLOD
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BaseQRankSum
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FS
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Non-Finnish)
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allele num: 66702
num of homozygotes: 0

European (Finnish)
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East Asian
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Latino
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num of homozygotes: 0

FS
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 2.237785e6

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9330
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10303
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 2.230204e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.29e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 2.228875e6

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

QD
type: SiteQuality
SIO_000300: 1.443e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 3.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9179
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 4.65e0

DP
type: SiteQuality
SIO_000300: 2.206745e6

FS
type: SiteQuality
SIO_000300: 8.935e0

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

GenotypeQuality
all individuals: 698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9179
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26903
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 4.65e0

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 8.935e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 2.206745e6

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 551
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26903
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 9726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21580547112462e-4
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744896178677369e-4
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.053677333895295e-4
allele num: 66434
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 4.65e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 8.935e0

DP
type: SiteQuality
SIO_000300: 2.206745e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 8.935e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 4.65e0

DP
type: SiteQuality
SIO_000300: 2.206745e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
all individuals: 649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 1047
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variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 687
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variant carriers: 0

GenotypeQuality
all individuals: 459
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variant carriers: 0

GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
all individuals: 25672
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3328
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

FS
type: SiteQuality
SIO_000300: 9.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.209e-1

DP
type: SiteQuality
SIO_000300: 2.195594e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9170
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 769
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
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variant carriers: 0

GenotypeQuality
all individuals: 396
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
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variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9085
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.054375658984787e-4
allele num: 66390
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.381e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
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SIO_000300: 6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 2.190827e6

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 1.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -1.48e0

InbreedingCoeff
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SIO_000300: 2.1e-3

DP
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MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.587e1

MQRankSum
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SIO_000300: -1.406e0

FS
type: SiteQuality
SIO_000300: 8.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
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SIO_000300: -1.675e0

VQSLOD
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SIO_000300: -1.997e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 16478
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e0

QD
type: SiteQuality
SIO_000300: 1.094e1

FS
type: SiteQuality
SIO_000300: 1.522e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 2.166391e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.517255917605252e-5
allele num: 66412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.916e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.009e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.139891e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520386945122503e-5
allele num: 66366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.692625943051837e-4
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

DP
type: SiteQuality
SIO_000300: 2.119826e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744896178677369e-4
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
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SIO_000300: -4.085e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.133e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 2.112688e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.108702e6

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.525159888982744e-5
allele num: 66296
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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MQRankSum
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SIO_000300: -3.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
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GenotypeQuality
all individuals: 529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.056539982491623e-4
allele num: 66254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.099056e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.44e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 561
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variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
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SIO_000300: -1.52e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.08e0

DP
type: SiteQuality
SIO_000300: 2.09683e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.141e0

FS
type: SiteQuality
SIO_000300: 4.151e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 933
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1728
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

DP
type: SiteQuality
SIO_000300: 2.09253e6

ClippingRankSum
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SIO_000300: 1.29e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.761e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
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GenotypeQuality
all individuals: 1709
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025260928755105e-5
allele num: 66110
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.126700159294204e-4
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.1e1

ReadPosRankSum
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SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 2.086345e6

FS
type: SiteQuality
SIO_000300: 1.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2835
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025993282294913e-5
allele num: 66094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65908
num of homozygotes: 0

African
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allele count: 0
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Latino
type: Population
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allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
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allele frequency: 9.815469179426777e-5
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517266492686776e-5
allele num: 65908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
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DP
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SIO_000300: 2.061692e6

VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 3.305e0

ClippingRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.796622097114708e-5
allele num: 11368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.052582e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.67e-1

FS
type: SiteQuality
SIO_000300: 2.626e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9076
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 727
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.965022597759874e-4
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.04062271953296e-5
allele num: 65776
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.187134502923977e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 1.857e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 2.042837e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.188e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2381
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.812125484666901e-5
allele num: 11348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.566e1

FS
type: SiteQuality
SIO_000300: 4.246e0

VQSLOD
type: SiteQuality
SIO_000300: -1.412e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.03477e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1746
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 407
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GenotypeQuality
all individuals: 515
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.816787162757891e-5
allele num: 11342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65670
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.209e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

DP
type: SiteQuality
SIO_000300: 2.031133e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.833e0

MQ
type: SiteQuality
SIO_000300: 6.013e1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 2.107e1

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
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variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 507
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GenotypeQuality
all individuals: 1399
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 2334
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GenotypeQuality
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GenotypeQuality
all individuals: 2616
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variant carriers: 0

GenotypeQuality
all individuals: 593
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variant carriers: 0

GenotypeQuality
all individuals: 927
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variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522162688748173e-5
allele num: 65696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.886e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.082e0

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 2.028346e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 744

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2552
bin: 7.75e1
variant carriers: 3

African
type: Population
allele count: 10
allele frequency: 9.84251968503937e-4
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 8.908685968819599e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.324386367649656e-3
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 63
allele frequency: 7.375321938656053e-3
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 49
allele frequency: 7.552404438964242e-3
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 418
allele frequency: 6.363221190439946e-3
allele num: 65690
num of homozygotes: 1

South Asian
type: Population
allele count: 195
allele frequency: 1.206981926219361e-2
allele num: 16156
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

DP
type: SiteQuality
SIO_000300: 2.043974e6

GenotypeQuality
all individuals: 938
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 903
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GenotypeQuality
all individuals: 9058
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.002737e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6153
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GenotypeQuality
all individuals: 900
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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African
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South Asian
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QD
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DP
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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FS
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DP
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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East Asian
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Latino
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Other
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African
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European (Finnish)
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South Asian
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ReadPosRankSum
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DP
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FS
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533554165133113e-5
allele num: 65208
num of homozygotes: 0

Latino
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Other
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European (Finnish)
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MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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East Asian
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allele num: 8500
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African
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Latino
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South Asian
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European (Finnish)
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Other
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.539645881447267e-5
allele num: 64950
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South Asian
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European (Finnish)
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African
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Other
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East Asian
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Latino
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
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MQ
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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