3-111667762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667762
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667762
    reference: chr 3
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2359-17T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2359-17T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3558T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2440-17T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2488-17T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2359-17T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2488-17T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.389-17T>C
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

3-111667791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667791
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667791
    reference: chr 3
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2371G>A
  hgvsp: ENSP00000418319.1:p.Val791Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2500G>A
  hgvsp: ENSP00000405405.2:p.Val834Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2452G>A
  hgvsp: ENSP00000377500.3:p.Val818Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2371G>A
  hgvsp: ENSP00000405292.1:p.Val791Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2500G>A
  hgvsp: ENSP00000377502.3:p.Val834Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2371G>A
  hgvsp: ENSP00000418296.1:p.Val791Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3587G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.401G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9353
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val834Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-111667803-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667803
    reference: chr 3
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2383A>C
  hgvsp: ENSP00000418319.1:p.Asn795His
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.413A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2464A>C
  hgvsp: ENSP00000377500.3:p.Asn822His
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2512A>C
  hgvsp: ENSP00000377502.3:p.Asn838His
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2512A>C
  hgvsp: ENSP00000405405.2:p.Asn838His
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2383A>C
  hgvsp: ENSP00000405292.1:p.Asn795His
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3599A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2383A>C
  hgvsp: ENSP00000418296.1:p.Asn795His
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39982
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn838His
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-111667804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667804
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667804
    reference: chr 3
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2384A>G
  hgvsp: ENSP00000405292.1:p.Asn795Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2513A>G
  hgvsp: ENSP00000405405.2:p.Asn838Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3600A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2465A>G
  hgvsp: ENSP00000377500.3:p.Asn822Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2513A>G
  hgvsp: ENSP00000377502.3:p.Asn838Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2384A>G
  hgvsp: ENSP00000418296.1:p.Asn795Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.414A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2384A>G
  hgvsp: ENSP00000418319.1:p.Asn795Ser
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn838Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

3-111667810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667810
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667810
    reference: chr 3
allele count: 3
allele frequency: 2.473859550747106e-5
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2390C>T
  hgvsp: ENSP00000418296.1:p.Pro797Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2390C>T
  hgvsp: ENSP00000405292.1:p.Pro797Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2519C>T
  hgvsp: ENSP00000377502.3:p.Pro840Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2471C>T
  hgvsp: ENSP00000377500.3:p.Pro824Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3606C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2519C>T
  hgvsp: ENSP00000405405.2:p.Pro840Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2390C>T
  hgvsp: ENSP00000418319.1:p.Pro797Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.420C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28077
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9353
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro840Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-111667811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667811
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667811
    reference: chr 3
allele count: 7
allele frequency: 5.772053366756271e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2520G>A
  hgvsp: ENST00000431670.2:c.2520G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3607G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2391G>A
  hgvsp: ENST00000412622.1:c.2391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2520G>A
  hgvsp: ENST00000393925.3:c.2520G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2391G>A
  hgvsp: ENST00000481953.1:c.2391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.421G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2391G>A
  hgvsp: ENST00000498699.1:c.2391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2472G>A
  hgvsp: ENST00000393923.3:c.2472G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro840Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

3-111667816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667816
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667816
    reference: chr 3
allele count: 4
allele frequency: 3.298479400996141e-5
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2396G>A
  hgvsp: ENSP00000418319.1:p.Gly799Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3612G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2477G>A
  hgvsp: ENSP00000377500.3:p.Gly826Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2525G>A
  hgvsp: ENSP00000377502.3:p.Gly842Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2396G>A
  hgvsp: ENSP00000405292.1:p.Gly799Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.426G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2396G>A
  hgvsp: ENSP00000418296.1:p.Gly799Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2525G>A
  hgvsp: ENSP00000405405.2:p.Gly842Asp
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly842Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

3-111667821-T-TCCACGAATCTATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667821
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667834
    reference: chr 3
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: TCCACGAATCTATC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsp: ENSP00000418319.1:p.Pro806HisfsTer12
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsp: ENSP00000405405.2:p.Pro849HisfsTer12
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsp: ENSP00000377502.3:p.Pro849HisfsTer12
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsp: ENSP00000418296.1:p.Pro806HisfsTer12
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsp: ENSP00000377500.3:p.Pro833HisfsTer12
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsp: ENSP00000405292.1:p.Pro806HisfsTer12
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro849HisfsTer12
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

3-111667825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667825
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667825
    reference: chr 3
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2405C>T
  hgvsp: ENSP00000418296.1:p.Thr802Met
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2405C>T
  hgvsp: ENSP00000405292.1:p.Thr802Met
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2534C>T
  hgvsp: ENSP00000405405.2:p.Thr845Met
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2486C>T
  hgvsp: ENSP00000377500.3:p.Thr829Met
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2405C>T
  hgvsp: ENSP00000418319.1:p.Thr802Met
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3621C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.435C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2534C>T
  hgvsp: ENSP00000377502.3:p.Thr845Met
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr845Met
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-111667830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667830
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667830
    reference: chr 3
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2410C>A
  hgvsp: ENSP00000418296.1:p.Leu804Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2410C>A
  hgvsp: ENSP00000418319.1:p.Leu804Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2491C>A
  hgvsp: ENSP00000377500.3:p.Leu831Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2539C>A
  hgvsp: ENSP00000405405.2:p.Leu847Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2410C>A
  hgvsp: ENSP00000405292.1:p.Leu804Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.440C>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2539C>A
  hgvsp: ENSP00000377502.3:p.Leu847Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3626C>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu847Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-111667832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667832
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667832
    reference: chr 3
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2541A>G
  hgvsp: ENST00000431670.2:c.2541A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.442A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2541A>G
  hgvsp: ENST00000393925.3:c.2541A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2412A>G
  hgvsp: ENST00000481953.1:c.2412A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3628A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2493A>G
  hgvsp: ENST00000393923.3:c.2493A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2412A>G
  hgvsp: ENST00000498699.1:c.2412A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2412A>G
  hgvsp: ENST00000412622.1:c.2412A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu847Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-111667833-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667833
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667833
    reference: chr 3
allele count: 19
allele frequency: 1.567191263321126e-4
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2542T>A
  hgvsp: ENSP00000405405.2:p.Ser848Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2542T>A
  hgvsp: ENSP00000377502.3:p.Ser848Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3629T>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2413T>A
  hgvsp: ENSP00000418319.1:p.Ser805Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2494T>A
  hgvsp: ENSP00000377500.3:p.Ser832Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.443T>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2413T>A
  hgvsp: ENSP00000418296.1:p.Ser805Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2413T>A
  hgvsp: ENSP00000405292.1:p.Ser805Thr
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser848Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-111667840-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667840
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667840
    reference: chr 3
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2501C>G
  hgvsp: ENSP00000377500.3:p.Ser834Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2549C>G
  hgvsp: ENSP00000377502.3:p.Ser850Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3636C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2420C>G
  hgvsp: ENSP00000405292.1:p.Ser807Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2549C>G
  hgvsp: ENSP00000405405.2:p.Ser850Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2420C>G
  hgvsp: ENSP00000418319.1:p.Ser807Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.450C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2420C>G
  hgvsp: ENSP00000418296.1:p.Ser807Cys
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9339
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser850Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

3-111667852-C-CTGCTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667852
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667858
    reference: chr 3
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: CTGCTGA
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2573_2578dupATGCTG
  hgvsp: ENSP00000405405.2:p.Asp858_Ala859dup
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2444_2449dupATGCTG
  hgvsp: ENSP00000418319.1:p.Asp815_Ala816dup
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2444_2449dupATGCTG
  hgvsp: ENSP00000405292.1:p.Asp815_Ala816dup
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2573_2578dupATGCTG
  hgvsp: ENSP00000377502.3:p.Asp858_Ala859dup
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2444_2449dupATGCTG
  hgvsp: ENSP00000418296.1:p.Asp815_Ala816dup
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.474_479dupATGCTG
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2525_2530dupATGCTG
  hgvsp: ENSP00000377500.3:p.Asp842_Ala843dup
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp858_Ala859dup
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-111667852-CTGCTGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667852
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667846
    reference: chr 3
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2573_2578delATGCTG
  hgvsp: ENSP00000405405.2:p.Asp858_Ala859del
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2525_2530delATGCTG
  hgvsp: ENSP00000377500.3:p.Asp842_Ala843del
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2573_2578delATGCTG
  hgvsp: ENSP00000377502.3:p.Asp858_Ala859del
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2444_2449delATGCTG
  hgvsp: ENSP00000418319.1:p.Asp815_Ala816del
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.474_479delATGCTG
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2444_2449delATGCTG
  hgvsp: ENSP00000405292.1:p.Asp815_Ala816del
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2444_2449delATGCTG
  hgvsp: ENSP00000418296.1:p.Asp815_Ala816del
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp858_Ala859del
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: CTGCTGA
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

3-111667867-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667867
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667867
    reference: chr 3
allele count: 11
allele frequency: 9.101439682277015e-5
allele num: 120860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2576C>G
  hgvsp: ENSP00000377502.3:p.Ala859Gly
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3663C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2528C>G
  hgvsp: ENSP00000377500.3:p.Ala843Gly
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2447C>G
  hgvsp: ENSP00000418319.1:p.Ala816Gly
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2447C>G
  hgvsp: ENSP00000418296.1:p.Ala816Gly
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2576C>G
  hgvsp: ENSP00000405405.2:p.Ala859Gly
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.477C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2447C>G
  hgvsp: ENSP00000405292.1:p.Ala816Gly
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala859Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

3-111667869-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667869
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667869
    reference: chr 3
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2449G>C
  hgvsp: ENSP00000418296.1:p.Val817Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2449G>C
  hgvsp: ENSP00000405292.1:p.Val817Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2578G>C
  hgvsp: ENSP00000377502.3:p.Val860Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2449G>C
  hgvsp: ENSP00000418319.1:p.Val817Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3665G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.479G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2530G>C
  hgvsp: ENSP00000377500.3:p.Val844Leu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2578G>C
  hgvsp: ENSP00000405405.2:p.Val860Leu
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val860Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-111667877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667877
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667877
    reference: chr 3
allele count: 1
allele frequency: 8.302337938363443e-6
allele num: 120448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2538T>C
  hgvsp: ENST00000393923.3:c.2538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3673T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2586T>C
  hgvsp: ENST00000431670.2:c.2586T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2586T>C
  hgvsp: ENST00000393925.3:c.2586T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.487T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2457T>C
  hgvsp: ENST00000412622.1:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2457T>C
  hgvsp: ENST00000498699.1:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2457T>C
  hgvsp: ENST00000481953.1:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr862Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

3-111667880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667880
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667880
    reference: chr 3
allele count: 1
allele frequency: 8.345016356232058e-6
allele num: 119832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2589G>A
  hgvsp: ENST00000393925.3:c.2589G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2460G>A
  hgvsp: ENST00000498699.1:c.2460G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3676G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.490G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2541G>A
  hgvsp: ENST00000393923.3:c.2541G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2460G>A
  hgvsp: ENST00000412622.1:c.2460G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2460G>A
  hgvsp: ENST00000481953.1:c.2460G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2589G>A
  hgvsp: ENST00000431670.2:c.2589G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu863Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-111667884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667884
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667884
    reference: chr 3
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.494G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2593G>A
  hgvsp: ENSP00000405405.2:p.Ala865Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2464G>A
  hgvsp: ENSP00000405292.1:p.Ala822Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2593G>A
  hgvsp: ENSP00000377502.3:p.Ala865Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2464G>A
  hgvsp: ENSP00000418296.1:p.Ala822Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2464G>A
  hgvsp: ENSP00000418319.1:p.Ala822Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2545G>A
  hgvsp: ENSP00000377500.3:p.Ala849Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3680G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala865Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/3-111667885-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667885
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667885
    reference: chr 3
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2594C>A
  hgvsp: ENSP00000377502.3:p.Ala865Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.495C>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2465C>A
  hgvsp: ENSP00000418319.1:p.Ala822Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2465C>A
  hgvsp: ENSP00000418296.1:p.Ala822Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2465C>A
  hgvsp: ENSP00000405292.1:p.Ala822Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2546C>A
  hgvsp: ENSP00000377500.3:p.Ala849Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2594C>A
  hgvsp: ENSP00000405405.2:p.Ala865Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3681C>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala865Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

3-111667887-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667887
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667887
    reference: chr 3
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2467A>G
  hgvsp: ENSP00000405292.1:p.Thr823Ala
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2596A>G
  hgvsp: ENSP00000377502.3:p.Thr866Ala
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2467A>G
  hgvsp: ENSP00000418296.1:p.Thr823Ala
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3683A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2548A>G
  hgvsp: ENSP00000377500.3:p.Thr850Ala
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2467A>G
  hgvsp: ENSP00000418319.1:p.Thr823Ala
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.497A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2596A>G
  hgvsp: ENSP00000405405.2:p.Thr866Ala
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr866Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-111667890-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667890
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667890
    reference: chr 3
allele count: 1
allele frequency: 8.307441806370146e-6
allele num: 120374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2551G>C
  hgvsp: ENSP00000377500.3:p.Ala851Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2470G>C
  hgvsp: ENSP00000418319.1:p.Ala824Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2470G>C
  hgvsp: ENSP00000405292.1:p.Ala824Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3686G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2599G>C
  hgvsp: ENSP00000377502.3:p.Ala867Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.500G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2470G>C
  hgvsp: ENSP00000418296.1:p.Ala824Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2599G>C
  hgvsp: ENSP00000405405.2:p.Ala867Pro
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala867Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-111667900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667900
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667900
    reference: chr 3
allele count: 24
allele frequency: 2.013389037096693e-4
allele num: 119202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2561C>T
  hgvsp: ENSP00000377500.3:p.Ala854Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2609C>T
  hgvsp: ENSP00000405405.2:p.Ala870Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2480C>T
  hgvsp: ENSP00000418296.1:p.Ala827Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2480C>T
  hgvsp: ENSP00000418319.1:p.Ala827Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3696C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2609C>T
  hgvsp: ENSP00000377502.3:p.Ala870Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2480C>T
  hgvsp: ENSP00000405292.1:p.Ala827Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.510C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28232
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala870Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

3-111667901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667901
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667901
    reference: chr 3
allele count: 893
allele frequency: 7.430644543926509e-3
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2481G>A
  hgvsp: ENST00000481953.1:c.2481G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2610G>A
  hgvsp: ENST00000431670.2:c.2610G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2481G>A
  hgvsp: ENST00000498699.1:c.2481G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2562G>A
  hgvsp: ENST00000393923.3:c.2562G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2481G>A
  hgvsp: ENST00000412622.1:c.2481G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2610G>A
  hgvsp: ENST00000393925.3:c.2610G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.511G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3697G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 14364
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 3.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 28229
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Ala870Ala
num of homozygotes: 35
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-111667901-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667901
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667901
    reference: chr 3
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2481G>C
  hgvsp: ENST00000412622.1:c.2481G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2481G>C
  hgvsp: ENST00000498699.1:c.2481G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.511G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2610G>C
  hgvsp: ENST00000431670.2:c.2610G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2481G>C
  hgvsp: ENST00000481953.1:c.2481G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2610G>C
  hgvsp: ENST00000393925.3:c.2610G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3697G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2562G>C
  hgvsp: ENST00000393923.3:c.2562G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala870Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-111667903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667903
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667903
    reference: chr 3
allele count: 1
allele frequency: 8.326533331112925e-6
allele num: 120098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3699G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2483G>A
  hgvsp: ENSP00000418296.1:p.Ser828Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2564G>A
  hgvsp: ENSP00000377500.3:p.Ser855Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2483G>A
  hgvsp: ENSP00000418319.1:p.Ser828Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.513G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2483G>A
  hgvsp: ENSP00000405292.1:p.Ser828Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2612G>A
  hgvsp: ENSP00000377502.3:p.Ser871Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2612G>A
  hgvsp: ENSP00000405405.2:p.Ser871Asn
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser871Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

3-111667918-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667918
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667918
    reference: chr 3
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2498A>T
  hgvsp: ENSP00000418296.1:p.Lys833Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3714A>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2627A>T
  hgvsp: ENSP00000377502.3:p.Lys876Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2498A>T
  hgvsp: ENSP00000418319.1:p.Lys833Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2627A>T
  hgvsp: ENSP00000405405.2:p.Lys876Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2579A>T
  hgvsp: ENSP00000377500.3:p.Lys860Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2498A>T
  hgvsp: ENSP00000405292.1:p.Lys833Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.528A>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys876Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

3-111667927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667927
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667927
    reference: chr 3
allele count: 1
allele frequency: 8.347663488989432e-6
allele num: 119794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3723G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+5G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+5G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+5G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+5G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+5G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+5G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+5G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2631+5G>A
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-111667931-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667931
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667931
    reference: chr 3
allele count: 1
allele frequency: 8.36638053645232e-6
allele num: 119526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3727G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+9G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+9G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+9G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+9G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+9G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+9G>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+9G>C
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

3-111667937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667937
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667937
    reference: chr 3
allele count: 1400
allele frequency: 1.175502527330434e-2
allele num: 119098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+15C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+15C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3733C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+15C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+15C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+15C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+15C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+15C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 3.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 25226
  bin: 2.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 14188
  bin: 2.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7028
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 9.75e1
  variant carriers: 1372
num of homozygotes: 11
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

3-111667938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667938
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667938
    reference: chr 3
allele count: 5
allele frequency: 4.20076285853511e-5
allele num: 119026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+16G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+16G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+16G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+16G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+16G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+16G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3734G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+16G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25305
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-111667939-TTTCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667939
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667935
    reference: chr 3
allele count: 1
allele frequency: 8.40745909771149e-6
allele num: 118942
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+26_2583+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+26_2631+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+26_2502+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+26_532+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+26_2502+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+26_2502+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+26_2631+29delTTCA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3744_1245+3747delTTCA
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TTTCA
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-111667943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667943
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667943
    reference: chr 3
allele count: 121
allele frequency: 1.018587110243114e-3
allele num: 118792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+21A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3739A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+21A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+21A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+21A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+21A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+21A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+21A>G
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23594
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

3-111667945-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667945
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667945
    reference: chr 3
allele count: 1
allele frequency: 8.424315945545221e-6
allele num: 118704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+23T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3741T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+23T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+23T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+23T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+23T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+23T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+23T>G
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

3-111667952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667952
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667952
    reference: chr 3
allele count: 1
allele frequency: 8.451085119329322e-6
allele num: 118328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+30C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3748C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+30C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+30C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+30C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+30C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+30C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+30C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27818
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-111667968-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111667968
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111667968
    reference: chr 3
allele count: 1
allele frequency: 8.588999209812073e-6
allele num: 116428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1245+3764C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2502+46C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2631+46C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2502+46C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2502+46C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2583+46C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2631+46C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl transcript: ENST00000478733
  gene symbol: PHLDB2
  hgvsc: ENST00000478733.1:n.532+46C>G
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15364
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7221
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

3-111671371-T-TTACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671371
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671375
    reference: chr 3
allele count: 1
allele frequency: 8.405480373203328e-6
allele num: 118970
alternate allele: TTACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-47_2632-44dupTACA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1405_1246-1402dupTACA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-47_2584-44dupTACA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-47_2503-44dupTACA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-47_2503-44dupTACA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-47_2632-44dupTACA
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-47_2503-44dupTACA
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4470
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-111671374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671374
    reference: chr 3
allele count: 1
allele frequency: 8.414533582403528e-6
allele num: 118842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-45C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-45C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1403C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-45C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-45C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-45C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-45C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-111671393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671393
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671393
    reference: chr 3
allele count: 1
allele frequency: 8.373806732540612e-6
allele num: 119420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-26A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-26A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-26A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-26A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1384A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-26A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-26A>G
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

3-111671394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671394
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671394
    reference: chr 3
allele count: 1
allele frequency: 8.371703641691085e-6
allele num: 119450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1383T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-25T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-25T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-25T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-25T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-25T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-25T>C
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-111671405-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671405
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671405
    reference: chr 3
allele count: 2
allele frequency: 1.664170411050091e-5
allele num: 120180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-14A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-14A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1372A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-14A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-14A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-14A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-14A>G
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-111671411-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671411
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671411
    reference: chr 3
allele count: 12
allele frequency: 9.956523182104809e-5
allele num: 120524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-8A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-8A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-8A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-8A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-8A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-8A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1366A>C
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10907
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2632-8A>C
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-111671418-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671418
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671418
    reference: chr 3
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2632-1G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2503-1G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2632-1G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2503-1G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1359G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2503-1G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2584-1G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2632-1G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

3-111671426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671426
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671426
    reference: chr 3
allele count: 415
allele frequency: 3.430545911450584e-3
allele num: 120972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2510G>A
  hgvsp: ENSP00000418319.1:p.Arg837Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2510G>A
  hgvsp: ENSP00000405292.1:p.Arg837Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2639G>A
  hgvsp: ENSP00000377502.3:p.Arg880Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2591G>A
  hgvsp: ENSP00000377500.3:p.Arg864Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2639G>A
  hgvsp: ENSP00000405405.2:p.Arg880Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2510G>A
  hgvsp: ENSP00000418296.1:p.Arg837Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1351G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 6.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 11630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6316
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg880Lys
num of homozygotes: 1
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-111671434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671434
    reference: chr 3
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2518G>A
  hgvsp: ENSP00000418319.1:p.Glu840Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2647G>A
  hgvsp: ENSP00000405405.2:p.Glu883Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1343G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2647G>A
  hgvsp: ENSP00000377502.3:p.Glu883Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2518G>A
  hgvsp: ENSP00000405292.1:p.Glu840Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2518G>A
  hgvsp: ENSP00000418296.1:p.Glu840Lys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2599G>A
  hgvsp: ENSP00000377500.3:p.Glu867Lys
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21789
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu883Lys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-111671436-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671436
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671436
    reference: chr 3
allele count: 8
allele frequency: 6.606765327695561e-5
allele num: 121088
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2649A>C
  hgvsp: ENSP00000405405.2:p.Glu883Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1341A>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2601A>C
  hgvsp: ENSP00000377500.3:p.Glu867Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2520A>C
  hgvsp: ENSP00000405292.1:p.Glu840Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2520A>C
  hgvsp: ENSP00000418319.1:p.Glu840Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2520A>C
  hgvsp: ENSP00000418296.1:p.Glu840Asp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2649A>C
  hgvsp: ENSP00000377502.3:p.Glu883Asp
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21793
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Glu883Asp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-111671453-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671453
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671453
    reference: chr 3
allele count: 3
allele frequency: 2.475410918212423e-5
allele num: 121192
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2666A>G
  hgvsp: ENSP00000405405.2:p.His889Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2537A>G
  hgvsp: ENSP00000418319.1:p.His846Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2537A>G
  hgvsp: ENSP00000418296.1:p.His846Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2618A>G
  hgvsp: ENSP00000377500.3:p.His873Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2537A>G
  hgvsp: ENSP00000405292.1:p.His846Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1324A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2666A>G
  hgvsp: ENSP00000377502.3:p.His889Arg
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His889Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

3-111671460-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671460
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671460
    reference: chr 3
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2544A>G
  hgvsp: ENST00000498699.1:c.2544A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2673A>G
  hgvsp: ENST00000393925.3:c.2673A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2544A>G
  hgvsp: ENST00000412622.1:c.2544A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2625A>G
  hgvsp: ENST00000393923.3:c.2625A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2544A>G
  hgvsp: ENST00000481953.1:c.2544A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2673A>G
  hgvsp: ENST00000431670.2:c.2673A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1317A>G
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu891Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

3-111671463-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671463
    reference: chr 3
allele count: 2
allele frequency: 1.649811096629436e-5
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2676C>G
  hgvsp: ENST00000431670.2:c.2676C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2547C>G
  hgvsp: ENST00000412622.1:c.2547C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2547C>G
  hgvsp: ENST00000498699.1:c.2547C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2547C>G
  hgvsp: ENST00000481953.1:c.2547C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2628C>G
  hgvsp: ENST00000393923.3:c.2628C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1314C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2676C>G
  hgvsp: ENST00000393925.3:c.2676C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5320
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly892Gly
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

3-111671473-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671473
    reference: chr 3
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2686A>T
  hgvsp: ENSP00000405405.2:p.Ser896Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2557A>T
  hgvsp: ENSP00000418319.1:p.Ser853Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2557A>T
  hgvsp: ENSP00000405292.1:p.Ser853Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2686A>T
  hgvsp: ENSP00000377502.3:p.Ser896Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2638A>T
  hgvsp: ENSP00000377500.3:p.Ser880Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2557A>T
  hgvsp: ENSP00000418296.1:p.Ser853Cys
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1304A>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser896Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

3-111671475-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671475
    reference: chr 3
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1302T>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2640T>G
  hgvsp: ENSP00000377500.3:p.Ser880Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2688T>G
  hgvsp: ENSP00000377502.3:p.Ser896Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2559T>G
  hgvsp: ENSP00000418319.1:p.Ser853Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2559T>G
  hgvsp: ENSP00000405292.1:p.Ser853Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2559T>G
  hgvsp: ENSP00000418296.1:p.Ser853Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2688T>G
  hgvsp: ENSP00000405405.2:p.Ser896Arg
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser896Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

3-111671483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671483
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671483
    reference: chr 3
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2567T>C
  hgvsp: ENSP00000405292.1:p.Leu856Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1294T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2567T>C
  hgvsp: ENSP00000418296.1:p.Leu856Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2567T>C
  hgvsp: ENSP00000418319.1:p.Leu856Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2696T>C
  hgvsp: ENSP00000377502.3:p.Leu899Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2648T>C
  hgvsp: ENSP00000377500.3:p.Leu883Ser
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2696T>C
  hgvsp: ENSP00000405405.2:p.Leu899Ser
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu899Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

3-111671488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671488
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671488
    reference: chr 3
allele count: 2
allele frequency: 1.649702228747711e-5
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2701C>T
  hgvsp: ENSP00000405405.2:p.Arg901Ter
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2572C>T
  hgvsp: ENSP00000418319.1:p.Arg858Ter
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2572C>T
  hgvsp: ENSP00000405292.1:p.Arg858Ter
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2572C>T
  hgvsp: ENSP00000418296.1:p.Arg858Ter
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2653C>T
  hgvsp: ENSP00000377500.3:p.Arg885Ter
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1289C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2701C>T
  hgvsp: ENSP00000377502.3:p.Arg901Ter
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21792
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14653
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg901Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

3-111671489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671489
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671489
    reference: chr 3
allele count: 4
allele frequency: 3.299513321785036e-5
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2702G>A
  hgvsp: ENSP00000405405.2:p.Arg901Gln
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2573G>A
  hgvsp: ENSP00000418319.1:p.Arg858Gln
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2702G>A
  hgvsp: ENSP00000377502.3:p.Arg901Gln
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2573G>A
  hgvsp: ENSP00000418296.1:p.Arg858Gln
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1288G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2654G>A
  hgvsp: ENSP00000377500.3:p.Arg885Gln
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2573G>A
  hgvsp: ENSP00000405292.1:p.Arg858Gln
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg901Gln
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

3-111671502-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671502
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671502
    reference: chr 3
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2667A>G
  hgvsp: ENST00000393923.3:c.2667A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2715A>G
  hgvsp: ENST00000393925.3:c.2715A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2715A>G
  hgvsp: ENST00000431670.2:c.2715A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1275A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2586A>G
  hgvsp: ENST00000498699.1:c.2586A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2586A>G
  hgvsp: ENST00000481953.1:c.2586A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2586A>G
  hgvsp: ENST00000412622.1:c.2586A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr905Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-111671508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671508
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671508
    reference: chr 3
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2592C>T
  hgvsp: ENST00000481953.1:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2673C>T
  hgvsp: ENST00000393923.3:c.2673C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2721C>T
  hgvsp: ENST00000431670.2:c.2721C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2721C>T
  hgvsp: ENST00000393925.3:c.2721C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2592C>T
  hgvsp: ENST00000412622.1:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2592C>T
  hgvsp: ENST00000498699.1:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1269C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21794
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser907Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

3-111671510-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671510
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671510
    reference: chr 3
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1267T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2723T>C
  hgvsp: ENSP00000377502.3:p.Ile908Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2723T>C
  hgvsp: ENSP00000405405.2:p.Ile908Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2594T>C
  hgvsp: ENSP00000418296.1:p.Ile865Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2675T>C
  hgvsp: ENSP00000377500.3:p.Ile892Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2594T>C
  hgvsp: ENSP00000405292.1:p.Ile865Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2594T>C
  hgvsp: ENSP00000418319.1:p.Ile865Thr
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21794
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile908Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-111671518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671518
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671518
    reference: chr 3
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2731C>T
  hgvsp: ENSP00000377502.3:p.His911Tyr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2683C>T
  hgvsp: ENSP00000377500.3:p.His895Tyr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2602C>T
  hgvsp: ENSP00000405292.1:p.His868Tyr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2602C>T
  hgvsp: ENSP00000418319.1:p.His868Tyr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2602C>T
  hgvsp: ENSP00000418296.1:p.His868Tyr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1259C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2731C>T
  hgvsp: ENSP00000405405.2:p.His911Tyr
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His911Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-111671519-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671519
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671519
    reference: chr 3
allele count: 2
allele frequency: 1.650410126916539e-5
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2603A>C
  hgvsp: ENSP00000405292.1:p.His868Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2684A>C
  hgvsp: ENSP00000377500.3:p.His895Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2603A>C
  hgvsp: ENSP00000418319.1:p.His868Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2732A>C
  hgvsp: ENSP00000377502.3:p.His911Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2603A>C
  hgvsp: ENSP00000418296.1:p.His868Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2732A>C
  hgvsp: ENSP00000405405.2:p.His911Pro
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1258A>C
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21794
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14620
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His911Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-111671536-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671536
    reference: chr 3
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2749A>G
  hgvsp: ENSP00000405405.2:p.Met917Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2620A>G
  hgvsp: ENSP00000418296.1:p.Met874Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2701A>G
  hgvsp: ENSP00000377500.3:p.Met901Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1241A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2620A>G
  hgvsp: ENSP00000405292.1:p.Met874Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2620A>G
  hgvsp: ENSP00000418319.1:p.Met874Val
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2749A>G
  hgvsp: ENSP00000377502.3:p.Met917Val
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met917Val
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

3-111671538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671538
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671538
    reference: chr 3
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1239G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2622G>A
  hgvsp: ENSP00000405292.1:p.Met874Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2622G>A
  hgvsp: ENSP00000418296.1:p.Met874Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2751G>A
  hgvsp: ENSP00000405405.2:p.Met917Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2703G>A
  hgvsp: ENSP00000377500.3:p.Met901Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2622G>A
  hgvsp: ENSP00000418319.1:p.Met874Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2751G>A
  hgvsp: ENSP00000377502.3:p.Met917Ile
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met917Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

3-111671538-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671538
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671538
    reference: chr 3
allele count: 2
allele frequency: 1.652373634726284e-5
allele num: 121038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2622G>T
  hgvsp: ENSP00000418296.1:p.Met874Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2703G>T
  hgvsp: ENSP00000377500.3:p.Met901Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2751G>T
  hgvsp: ENSP00000405405.2:p.Met917Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2751G>T
  hgvsp: ENSP00000377502.3:p.Met917Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2622G>T
  hgvsp: ENSP00000418319.1:p.Met874Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2622G>T
  hgvsp: ENSP00000405292.1:p.Met874Ile
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1239G>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21793
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Met917Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-111671539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671539
    reference: chr 3
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2752G>A
  hgvsp: ENSP00000377502.3:p.Gly918Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2623G>A
  hgvsp: ENSP00000418319.1:p.Gly875Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2623G>A
  hgvsp: ENSP00000418296.1:p.Gly875Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2752G>A
  hgvsp: ENSP00000405405.2:p.Gly918Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1238G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2623G>A
  hgvsp: ENSP00000405292.1:p.Gly875Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2704G>A
  hgvsp: ENSP00000377500.3:p.Gly902Arg
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly918Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

3-111671539-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671539
    reference: chr 3
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2623G>T
  hgvsp: ENSP00000418296.1:p.Gly875Trp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1238G>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2704G>T
  hgvsp: ENSP00000377500.3:p.Gly902Trp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2752G>T
  hgvsp: ENSP00000405405.2:p.Gly918Trp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2623G>T
  hgvsp: ENSP00000418319.1:p.Gly875Trp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2623G>T
  hgvsp: ENSP00000405292.1:p.Gly875Trp
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2752G>T
  hgvsp: ENSP00000377502.3:p.Gly918Trp
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly918Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-111671540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671540
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671540
    reference: chr 3
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2624G>A
  hgvsp: ENSP00000418296.1:p.Gly875Glu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2705G>A
  hgvsp: ENSP00000377500.3:p.Gly902Glu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2753G>A
  hgvsp: ENSP00000377502.3:p.Gly918Glu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2753G>A
  hgvsp: ENSP00000405405.2:p.Gly918Glu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2624G>A
  hgvsp: ENSP00000418319.1:p.Gly875Glu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2624G>A
  hgvsp: ENSP00000405292.1:p.Gly875Glu
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1237G>A
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly918Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

3-111671546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671546
    reference: chr 3
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2711G>A
  hgvsp: ENSP00000377500.3:p.Ser904Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2630G>A
  hgvsp: ENSP00000405292.1:p.Ser877Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2630G>A
  hgvsp: ENSP00000418319.1:p.Ser877Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1231G>A
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2630G>A
  hgvsp: ENSP00000418296.1:p.Ser877Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2759G>A
  hgvsp: ENSP00000377502.3:p.Ser920Asn
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2759G>A
  hgvsp: ENSP00000405405.2:p.Ser920Asn
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser920Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-111671547-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671547
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671547
    reference: chr 3
allele count: 2
allele frequency: 1.65371258475277e-5
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2631C>G
  hgvsp: ENSP00000405292.1:p.Ser877Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2712C>G
  hgvsp: ENSP00000377500.3:p.Ser904Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2631C>G
  hgvsp: ENSP00000418319.1:p.Ser877Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2760C>G
  hgvsp: ENSP00000405405.2:p.Ser920Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1230C>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2631C>G
  hgvsp: ENSP00000418296.1:p.Ser877Arg
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2760C>G
  hgvsp: ENSP00000377502.3:p.Ser920Arg
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21795
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser920Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-111671549-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671549
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671549
    reference: chr 3
allele count: 2
allele frequency: 1.653904040487571e-5
allele num: 120926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2633T>C
  hgvsp: ENSP00000405292.1:p.Ile878Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2633T>C
  hgvsp: ENSP00000418319.1:p.Ile878Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1228T>C
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2714T>C
  hgvsp: ENSP00000377500.3:p.Ile905Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2762T>C
  hgvsp: ENSP00000377502.3:p.Ile921Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2633T>C
  hgvsp: ENSP00000418296.1:p.Ile878Thr
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2762T>C
  hgvsp: ENSP00000405405.2:p.Ile921Thr
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile921Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

3-111671556-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671556
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671556
    reference: chr 3
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2769A>G
  hgvsp: ENST00000431670.2:c.2769A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2769A>G
  hgvsp: ENST00000393925.3:c.2769A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2721A>G
  hgvsp: ENST00000393923.3:c.2721A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2640A>G
  hgvsp: ENST00000498699.1:c.2640A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1221A>G
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2640A>G
  hgvsp: ENST00000412622.1:c.2640A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2640A>G
  hgvsp: ENST00000481953.1:c.2640A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro923Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-111671566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111671566
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 111671566
    reference: chr 3
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377500
  ensembl transcript: ENST00000393923
  gene symbol: PHLDB2
  hgvsc: ENST00000393923.3:c.2724+7C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418296
  ensembl transcript: ENST00000498699
  gene symbol: PHLDB2
  hgvsc: ENST00000498699.1:c.2643+7C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000377502
  ensembl transcript: ENST00000393925
  gene symbol: PHLDB2
  hgvsc: ENST00000393925.3:c.2772+7C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405292
  ensembl transcript: ENST00000412622
  gene symbol: PHLDB2
  hgvsc: ENST00000412622.1:c.2643+7C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000418319
  ensembl transcript: ENST00000481953
  gene symbol: PHLDB2
  hgvsc: ENST00000481953.1:c.2643+7C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000420303
  ensembl transcript: ENST00000495180
  gene symbol: PHLDB2
  hgvsc: ENST00000495180.1:c.1246-1211C>T
  variant of: http://identifiers.org/hgnc/29573
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144824
  ensembl protein: ENSP00000405405
  ensembl transcript: ENST00000431670
  gene symbol: PHLDB2
  hgvsc: ENST00000431670.2:c.2772+7C>T
  variant of: http://identifiers.org/hgnc/29573
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21795
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2772+7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.284e0

VQSLOD
type: SiteQuality
SIO_000300: -4.815e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.753177e6

MQ
type: SiteQuality
SIO_000300: 5.848e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

QD
type: SiteQuality
SIO_000300: 1.775e1

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.159e0

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.18e-1

DP
type: SiteQuality
SIO_000300: 1.759186e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.437e0

QD
type: SiteQuality
SIO_000300: 1.345e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 1544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.759533e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 1.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 9351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.064e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.759554e6

MQRankSum
type: SiteQuality
SIO_000300: 6.71e-1

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

DP
type: SiteQuality
SIO_000300: 1.759912e6

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 1.748e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 39970
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 1.102e0

QD
type: SiteQuality
SIO_000300: 1.378e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.08e-1

DP
type: SiteQuality
SIO_000300: 1.760002e6

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 4
allele frequency: 4.625346901017577e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.759605e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.208e1

MQRankSum
type: SiteQuality
SIO_000300: -5.196e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

FS
type: SiteQuality
SIO_000300: 1.156e0

DP
type: SiteQuality
SIO_000300: 1.759177e6

QD
type: SiteQuality
SIO_000300: 3.49e0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 1.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.759067e6

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.758726e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

FS
type: SiteQuality
SIO_000300: 3.931e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e0

QD
type: SiteQuality
SIO_000300: 1.255e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.335e0

GenotypeQuality
all individuals: 798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 9.323e0

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.391e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.394e0

DP
type: SiteQuality
SIO_000300: 1.758637e6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.730436454527975e-3
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

QD
type: SiteQuality
SIO_000300: 1.193e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.759577e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

GenotypeQuality
all individuals: 39839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.757704e6

QD
type: SiteQuality
SIO_000300: 9.18e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.3e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 2.489e0

DP
type: SiteQuality
SIO_000300: 1.754227e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.319e0

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -3.319e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

DP
type: SiteQuality
SIO_000300: 1.754227e6

MQ
type: SiteQuality
SIO_000300: 5.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.489e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.653290047193916e-4
allele num: 66534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.759e0

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

DP
type: SiteQuality
SIO_000300: 1.741272e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
all individuals: 756
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.532e1

DP
type: SiteQuality
SIO_000300: 1.741453e6

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.909e0

QD
type: SiteQuality
SIO_000300: 1.033e1

FS
type: SiteQuality
SIO_000300: 1.9102e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

DP
type: SiteQuality
SIO_000300: 1.72801e6

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.721687e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.275e0

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.332e0

FS
type: SiteQuality
SIO_000300: 1.8284e1

QD
type: SiteQuality
SIO_000300: 1.847e1

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.72084e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.728e0

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 2.267e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 1143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 5.418e0

QD
type: SiteQuality
SIO_000300: 1.342e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.719e0

VQSLOD
type: SiteQuality
SIO_000300: -1.769e0

DP
type: SiteQuality
SIO_000300: 1.719586e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506432466632521e-5
allele num: 66382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.512e0

DP
type: SiteQuality
SIO_000300: 1.715747e6

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.291e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38469
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510984859931704e-5
allele num: 66182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.70598e6

QD
type: SiteQuality
SIO_000300: 1.16e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

FS
type: SiteQuality
SIO_000300: 3.094e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 253
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.591343093570974e-4
allele num: 6284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.982553528945282e-4
allele num: 10088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.0517578125e-4
allele num: 65536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 2.973e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 1.696146e6

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8252
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3118
bin: 9.75e1
variant carriers: 847

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.454342984409799e-3
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.238314361830952e-4
allele num: 66064
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 3.337431933953978e-3
allele num: 11386
num of homozygotes: 0

African
type: Population
allele count: 820
allele frequency: 7.97045101088647e-2
allele num: 10288
num of homozygotes: 35

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.712438e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.447e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 1.931e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

FS
type: SiteQuality
SIO_000300: 1.931e0

DP
type: SiteQuality
SIO_000300: 1.712438e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeQuality
all individuals: 38949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2555
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.134e0

FS
type: SiteQuality
SIO_000300: 1.072e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 1.695324e6

QD
type: SiteQuality
SIO_000300: 9.23e0

GenotypeQuality
all individuals: 2417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.414e0

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.553e0

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 1.703402e6

FS
type: SiteQuality
SIO_000300: 1.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 680
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variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 2541
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GenotypeQuality
all individuals: 38062
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GenotypeQuality
all individuals: 552
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 360
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: -4.488e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.527e0

DP
type: SiteQuality
SIO_000300: 1.674984e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

GenotypeQuality
all individuals: 2424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7978
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variant carriers: 0

GenotypeQuality
all individuals: 343
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GenotypeQuality
all individuals: 939
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GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.581e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

DP
type: SiteQuality
SIO_000300: 1.65521e6

MQRankSum
type: SiteQuality
SIO_000300: -1.324e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

VQSLOD
type: SiteQuality
SIO_000300: -2.424e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1220
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GenotypeQuality
all individuals: 42
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 495
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GenotypeQuality
all individuals: 2273
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variant carriers: 4

GenotypeQuality
all individuals: 294
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GenotypeQuality
all individuals: 1073
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GenotypeQuality
all individuals: 35241
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1406
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 77
allele frequency: 9.136212624584718e-3
allele num: 8428
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 113
allele frequency: 1.769495772001253e-2
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 73
allele frequency: 6.512042818911686e-3
allele num: 11210
num of homozygotes: 2

African
type: Population
allele count: 20
allele frequency: 1.934984520123839e-3
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 997
allele frequency: 1.521905052663716e-2
allele num: 65510
num of homozygotes: 5

Other
type: Population
allele count: 14
allele frequency: 1.580135440180587e-2
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 106
allele frequency: 6.486354179415004e-3
allele num: 16342
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 1.631022e6

FS
type: SiteQuality
SIO_000300: 2.783e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 2360
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 2.75e1
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GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 2283
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variant carriers: 0

GenotypeQuality
all individuals: 889
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 1238
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GenotypeQuality
all individuals: 2085
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variant carriers: 0

GenotypeQuality
all individuals: 1565
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variant carriers: 0

GenotypeQuality
all individuals: 35861
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.111348774674571e-5
allele num: 65452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.253e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.608233e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

QD
type: SiteQuality
SIO_000300: 1.525e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
all individuals: 1848
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GenotypeQuality
all individuals: 1231
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GenotypeQuality
all individuals: 1354
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GenotypeQuality
all individuals: 453
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 2067
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GenotypeQuality
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GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 34814
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.120700208103807e-5
allele num: 16338
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.423e1

MQRankSum
type: SiteQuality
SIO_000300: -2.385e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

DP
type: SiteQuality
SIO_000300: 1.594226e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.556e1

GenotypeQuality
all individuals: 1551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 9.25e1
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GenotypeQuality
all individuals: 34016
bin: 6.25e1
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GenotypeQuality
all individuals: 1304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 2449
bin: 9.75e1
variant carriers: 119

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.373455131649651e-4
allele num: 11166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 113
allele frequency: 1.095385808452889e-2
allele num: 10316
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530830935031535e-5
allele num: 65324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.514e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

DP
type: SiteQuality
SIO_000300: 1.574684e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

FS
type: SiteQuality
SIO_000300: 7.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531815814466469e-5
allele num: 65282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.348e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 1.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 1.552905e6

QD
type: SiteQuality
SIO_000300: 1.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537326282130119e-5
allele num: 65048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.665e0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

DP
type: SiteQuality
SIO_000300: 1.484022e6

VQSLOD
type: SiteQuality
SIO_000300: 5.87e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2345
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63984
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.36437e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e0

QD
type: SiteQuality
SIO_000300: 1.174e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1323
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variant carriers: 0

GenotypeQuality
all individuals: 7373
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.45577792123951e-5
allele num: 15490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.048e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

DP
type: SiteQuality
SIO_000300: 2.153016e6

MQ
type: SiteQuality
SIO_000300: 5.58e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4822
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GenotypeQuality
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GenotypeQuality
all individuals: 746
bin: 4.25e1
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GenotypeQuality
all individuals: 1320
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variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
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variant carriers: 0

GenotypeQuality
all individuals: 2750
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variant carriers: 0

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 21680
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.490977541217708e-5
allele num: 15406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.157949e6

VQSLOD
type: SiteQuality
SIO_000300: -1.875e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.766e0

QD
type: SiteQuality
SIO_000300: 5.91e0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2549
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

FS
type: SiteQuality
SIO_000300: 2.175e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e0

DP
type: SiteQuality
SIO_000300: 2.193186e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.46e1

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

DP
type: SiteQuality
SIO_000300: 2.194646e6

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.986e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

QD
type: SiteQuality
SIO_000300: 1.163e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.017228374015629e-5
allele num: 66286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.212978e6

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.568e0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2879
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GenotypeQuality
all individuals: 21735
bin: 9.75e1
variant carriers: 12

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.161215405457712e-3
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.374e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 2.219835e6

QD
type: SiteQuality
SIO_000300: 1.45e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 21732
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4593
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

FS
type: SiteQuality
SIO_000300: 1.872e0

QD
type: SiteQuality
SIO_000300: 1.221e1

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.44e-1

DP
type: SiteQuality
SIO_000300: 2.223954e6

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14423
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 414

GenotypeQuality
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GenotypeQuality
all individuals: 2870
bin: 7.25e1
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GenotypeQuality
all individuals: 4573
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 7
allele frequency: 7.743362831858407e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 8.77989706327581e-3
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 290
allele frequency: 4.357233006791274e-3
allele num: 66556
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 4.536730064561159e-3
allele num: 11462
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.71158665895508e-4
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.853e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 2.242755e6

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2887
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GenotypeQuality
all individuals: 4590
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.961e0

DP
type: SiteQuality
SIO_000300: 2.232379e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

FS
type: SiteQuality
SIO_000300: 3.861e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 5300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201237274392624e-4
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 1.148e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.374e1

DP
type: SiteQuality
SIO_000300: 2.232939e6

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 21792
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500720115218435e-5
allele num: 66656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

DP
type: SiteQuality
SIO_000300: 2.234469e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 8.319000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.852e1

VQSLOD
type: SiteQuality
SIO_000300: -6.518e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 2896
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variant carriers: 0

GenotypeQuality
all individuals: 14674
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2568
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 5318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 1.178e0

QD
type: SiteQuality
SIO_000300: 1.361e1

DP
type: SiteQuality
SIO_000300: 2.234593e6

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 4589
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4588
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

DP
type: SiteQuality
SIO_000300: 2.234708e6

VQSLOD
type: SiteQuality
SIO_000300: -9.143e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.902e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.043e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 8.45e-1

DP
type: SiteQuality
SIO_000300: 2.234667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 14675
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.324e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 2.234751e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21790
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQ
type: SiteQuality
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MQRankSum
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SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 1.929e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.23483e6

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.99880023995201e-5
allele num: 66680
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

FS
type: SiteQuality
SIO_000300: 1.741e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

DP
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SIO_000300: 2.234977e6

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.139e1

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

DP
type: SiteQuality
SIO_000300: 2.234777e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

FS
type: SiteQuality
SIO_000300: 4.084e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000030000300003e-5
allele num: 66666
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.074e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 2.234754e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.57e-1

FS
type: SiteQuality
SIO_000300: 8.6e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

DP
type: SiteQuality
SIO_000300: 2.234647e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.741856819369448e-4
allele num: 11482
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
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allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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South Asian
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East Asian
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
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VQSLOD
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.232288e6

BaseQRankSum
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SIO_000300: -4.355e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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SIO_000300: -7.37e-1

QD
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SIO_000300: 1.25e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 9.628345850182938e-5
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 2.232295e6

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
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allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.587e1

BaseQRankSum
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SIO_000300: -2.742e0

FS
type: SiteQuality
SIO_000300: 7.82e-1

MQRankSum
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SIO_000300: 8.75e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 2.232295e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.398e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.231879e6

FS
type: SiteQuality
SIO_000300: 4.895e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

MQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 2.105e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.088e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.971e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 2.230501e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.321262766945218e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66562
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele frequency: 1.926782273603083e-4
allele num: 10380
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South Asian
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Other
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QD
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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FS
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

DP
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SIO_000300: 2.226809e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.97e-1

MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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allele frequency: 6.171315724512466e-5
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Other
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European (Finnish)
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DP
type: SiteQuality
SIO_000300: 2.220697e6

MQRankSum
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MQ
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